MELO3C016146.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C016146.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Descriptionglycine-rich protein 5-like
Locationchr07: 20402200 .. 20402603 (-)
RNA-Seq ExpressionMELO3C016146.jh1
SyntenyMELO3C016146.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAAACTTATGGCATCGTTCTTATAGCTTGTGGGTCTGTGATAGCGGCTGTGATGATTTTATGGTGTGTTTGTAAGTTTGGAAGAAGTCGTAAAAAGAAGACAATTACATATAATATACCCAAACCCACTCCACAAAGGAGCCTTGATATTGAACGTGGCCAATTACCTAAGAACAATAATAATGGTGGGATGACTATTCTTGGTGGAGCAGCTGCGGGTTTAGCTACAGCTGCTGTTGTAACCAATTTAAGCAGCAGTGGCGGTGGCGGTGGCGGCGGTGGTGGAGGAGATTCTGGTAGTGGTGATGGCGGCGGTGGGGGATGTGGCGGTGGAGGCTGCGGTGGCTGCGGAGGTGGCTGTGGAGGTGGATGTGGATGAGGTGGAGGTTGATGTATAAGTGA

mRNA sequence

ATGAAAACTTATGGCATCGTTCTTATAGCTTGTGGGTCTGTGATAGCGGCTGTGATGATTTTATGGTGTGTTTGTAAGTTTGGAAGAAGTCGTAAAAAGAAGACAATTACATATAATATACCCAAACCCACTCCACAAAGGAGCCTTGATATTGAACGTGGCCAATTACCTAAGAACAATAATAATGGTGGGATGACTATTCTTGGTGGAGCAGCTGCGGGTTTAGCTACAGCTGCTGTTGTAACCAATTTAAGCAGCAGTGGCGGTGGCGGTGGCGGCGGTGGTGGAGGAGATTCTGGTAGTGGTGATGGCGGCGGTGGGGGATGTGGCGGTGGAGGCTGCGGTGGCTGCGGAGGTGGCTGTGGAGGTGGATGTGGATGAGGTGGAGGTTGATGTATAAGTGA

Coding sequence (CDS)

ATGAAAACTTATGGCATCGTTCTTATAGCTTGTGGGTCTGTGATAGCGGCTGTGATGATTTTATGGTGTGTTTGTAAGTTTGGAAGAAGTCGTAAAAAGAAGACAATTACATATAATATACCCAAACCCACTCCACAAAGGAGCCTTGATATTGAACGTGGCCAATTACCTAAGAACAATAATAATGGTGGGATGACTATTCTTGGTGGAGCAGCTGCGGGTTTAGCTACAGCTGCTGTTGTAACCAATTTAAGCAGCAGTGGCGGTGGCGGTGGCGGCGGTGGTGGAGGAGATTCTGGTAGTGGTGATGGCGGCGGTGGGGGATGTGGCGGTGGAGGCTGCGGTGGCTGCGGAGGTGGCTGTGGAGGTGGATGTGGATGA

Protein sequence

MKTYGIVLIACGSVIAAVMILWCVCKFGRSRKKKTITYNIPKPTPQRSLDIERGQLPKNNNNGGMTILGGAAAGLATAAVVTNLSSSGGGGGGGGGGDSGSGDGGGGGCGGGGCGGCGGGCGGGCG
Homology
BLAST of MELO3C016146.jh1 vs. NCBI nr
Match: KGN53550.1 (hypothetical protein Csa_015259 [Cucumis sativus])

HSP 1 Score: 167 bits (424), Expect = 5.85e-51
Identity = 113/130 (86.92%), Postives = 115/130 (88.46%), Query Frame = 0

Query: 1   MKTYGIVLIACGSVIAAVMILWCVCKFGRSRKKKTITYNIPKPTPQRSLDIERGQLPKNN 60
           MKTY IVLIA GSVI AVMILWCVCKFGRSRKKKTITYN+PK TPQR+LDIERGQLPKNN
Sbjct: 1   MKTYAIVLIAGGSVIGAVMILWCVCKFGRSRKKKTITYNMPKRTPQRNLDIERGQLPKNN 60

Query: 61  NNGGMTILGGAAAGLATAAVVTNLSSSGGGGGGGGGGDSGSGD----GGGGGCGGGGCGG 120
           NNGGMTILGGAAAGLATAAVVT LSSSGGGGGG    DSGSG     GGGGGC GGGCGG
Sbjct: 61  NNGGMTILGGAAAGLATAAVVTTLSSSGGGGGG----DSGSGGDGDGGGGGGC-GGGCGG 120

Query: 121 CGGGCGGGCG 126
           CGGGCGGGCG
Sbjct: 121 CGGGCGGGCG 125

BLAST of MELO3C016146.jh1 vs. NCBI nr
Match: KAG6577050.1 (hypothetical protein SDJN03_24624, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 115 bits (287), Expect = 4.20e-30
Identity = 86/130 (66.15%), Postives = 100/130 (76.92%), Query Frame = 0

Query: 1   MKTYGIVLIACGSVIAAVMILWCVCKFGRSRKKK----TITYNIPKPTPQRSLDIERGQL 60
           M+TY IVLI CG VIA+ +ILWCVC +G  +KKK    T T +  +PTP+ S D+E G+ 
Sbjct: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELGEA 60

Query: 61  PKNNNNGGMTILGGAAAGLATAAVVTNLSSSGGGGGGGGGGDSGSGDGGGGGCGGGGCGG 120
                NGGMTIL GAAAGLATAAVVT+L++ GGGGGGGGGG+ G GDGGGGGCGGG  GG
Sbjct: 61  ----KNGGMTILAGAAAGLATAAVVTSLTNDGGGGGGGGGGEEGGGDGGGGGCGGGCGGG 120

Query: 121 CGGGCGGGCG 126
           CGGGCGGGCG
Sbjct: 121 CGGGCGGGCG 126

BLAST of MELO3C016146.jh1 vs. NCBI nr
Match: XP_038889436.1 (acanthoscurrin-1-like [Benincasa hispida])

HSP 1 Score: 110 bits (274), Expect = 3.22e-28
Identity = 88/130 (67.69%), Postives = 95/130 (73.08%), Query Frame = 0

Query: 1   MKTYGIVLIACGSVIAAVMILWCVCKFGRSRKKKTITYNIPKPTPQRSLDIERGQLPKNN 60
           MKTYGIVLI CGSVIA +MIL CVCKFG  +  KT+TY IP    QR+ D+ERGQ   N 
Sbjct: 1   MKTYGIVLITCGSVIAGIMILRCVCKFGGRKIMKTVTY-IPNAASQRNPDLERGQ--PNK 60

Query: 61  NNGGMTILGGAAAGLATAAVVTNLSSS----GGGGGGGGGGDSGSGDGGGGGCGGGGCGG 120
           NNGG+TIL GAAAGLATAAVVTNL +     GGG GGG GGDSG G      CGGGGCGG
Sbjct: 61  NNGGITILAGAAAGLATAAVVTNLGNDDTGGGGGCGGGEGGDSGGG------CGGGGCGG 119

Query: 121 CGGGCGGGCG 126
             GGCGGGCG
Sbjct: 121 --GGCGGGCG 119

BLAST of MELO3C016146.jh1 vs. NCBI nr
Match: XP_023552868.1 (glycine-rich protein DOT1-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 108 bits (269), Expect = 2.32e-27
Identity = 87/132 (65.91%), Postives = 99/132 (75.00%), Query Frame = 0

Query: 1   MKTYGIVLIACGSVIAAVMILWCVCKFGRSRKKK----TITYNIPKPTPQRSLDIERGQL 60
           M+TY IVLI CG VIA+ +ILWCVC +G  +KKK    T T +  +PTP+ S D+E G+ 
Sbjct: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELGEA 60

Query: 61  PKNNNNGGMTILGGAAAGLATAAVVTNLSSSGGGGGGG--GGGDSGSGDGGGGGCGGGGC 120
                NGGMTIL GAAAGLATAAVVT+LS+ GGGGGGG  GGGD G GDGGGG CGGG  
Sbjct: 61  ----KNGGMTILAGAAAGLATAAVVTSLSNDGGGGGGGEEGGGDGGGGDGGGG-CGGGCG 120

Query: 121 GGCGGGCGGGCG 126
           GGCGGGCGGGCG
Sbjct: 121 GGCGGGCGGGCG 127

BLAST of MELO3C016146.jh1 vs. NCBI nr
Match: XP_022931328.1 (glycine-rich protein 5-like [Cucurbita moschata])

HSP 1 Score: 105 bits (261), Expect = 3.88e-26
Identity = 85/132 (64.39%), Postives = 98/132 (74.24%), Query Frame = 0

Query: 1   MKTYGIVLIACGSVIAAVMILWCVCKFGRSRKKK----TITYNIPKPTPQRSLDIERGQL 60
           M+TY IVLI CG VIA+ +ILWCVC +G  +KKK    T T +  +PTP+ S D+E G+ 
Sbjct: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELGEA 60

Query: 61  PKNNNNGGMTILGGAAAGLATAAVVTNLSSSGGGGGGGG--GGDSGSGDGGGGGCGGGGC 120
                NGGMTIL GAAAGLATAAVVT+L++ GGGGGGGG  GG  GSG  GGGGCGGG  
Sbjct: 61  ----KNGGMTILAGAAAGLATAAVVTSLTNDGGGGGGGGEEGGGDGSGGDGGGGCGGGCG 120

Query: 121 GGCGGGCGGGCG 126
           GGCGGGCGGGCG
Sbjct: 121 GGCGGGCGGGCG 128

BLAST of MELO3C016146.jh1 vs. ExPASy TrEMBL
Match: A0A0A0KVE1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G081280 PE=4 SV=1)

HSP 1 Score: 167 bits (424), Expect = 2.83e-51
Identity = 113/130 (86.92%), Postives = 115/130 (88.46%), Query Frame = 0

Query: 1   MKTYGIVLIACGSVIAAVMILWCVCKFGRSRKKKTITYNIPKPTPQRSLDIERGQLPKNN 60
           MKTY IVLIA GSVI AVMILWCVCKFGRSRKKKTITYN+PK TPQR+LDIERGQLPKNN
Sbjct: 1   MKTYAIVLIAGGSVIGAVMILWCVCKFGRSRKKKTITYNMPKRTPQRNLDIERGQLPKNN 60

Query: 61  NNGGMTILGGAAAGLATAAVVTNLSSSGGGGGGGGGGDSGSGD----GGGGGCGGGGCGG 120
           NNGGMTILGGAAAGLATAAVVT LSSSGGGGGG    DSGSG     GGGGGC GGGCGG
Sbjct: 61  NNGGMTILGGAAAGLATAAVVTTLSSSGGGGGG----DSGSGGDGDGGGGGGC-GGGCGG 120

Query: 121 CGGGCGGGCG 126
           CGGGCGGGCG
Sbjct: 121 CGGGCGGGCG 125

BLAST of MELO3C016146.jh1 vs. ExPASy TrEMBL
Match: A0A6J1EY84 (glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111437551 PE=4 SV=1)

HSP 1 Score: 105 bits (261), Expect = 1.88e-26
Identity = 85/132 (64.39%), Postives = 98/132 (74.24%), Query Frame = 0

Query: 1   MKTYGIVLIACGSVIAAVMILWCVCKFGRSRKKK----TITYNIPKPTPQRSLDIERGQL 60
           M+TY IVLI CG VIA+ +ILWCVC +G  +KKK    T T +  +PTP+ S D+E G+ 
Sbjct: 1   MRTYAIVLITCGCVIASAVILWCVCSYGGRKKKKAAPPTYTSSALRPTPRPSRDLELGEA 60

Query: 61  PKNNNNGGMTILGGAAAGLATAAVVTNLSSSGGGGGGGG--GGDSGSGDGGGGGCGGGGC 120
                NGGMTIL GAAAGLATAAVVT+L++ GGGGGGGG  GG  GSG  GGGGCGGG  
Sbjct: 61  ----KNGGMTILAGAAAGLATAAVVTSLTNDGGGGGGGGEEGGGDGSGGDGGGGCGGGCG 120

Query: 121 GGCGGGCGGGCG 126
           GGCGGGCGGGCG
Sbjct: 121 GGCGGGCGGGCG 128

BLAST of MELO3C016146.jh1 vs. ExPASy TrEMBL
Match: A0A6J1J409 (glycine-rich protein 5-like OS=Cucurbita maxima OX=3661 GN=LOC111483210 PE=4 SV=1)

HSP 1 Score: 103 bits (258), Expect = 5.20e-26
Identity = 85/131 (64.89%), Postives = 97/131 (74.05%), Query Frame = 0

Query: 1   MKTYGIVLIACGSVIAAVMILWCVCKFGRSRKKKTI----TYNIPKPTPQRSLDIERGQL 60
           M+TY IVLI  G VIA+ +ILWCVC +G  +KKKT     T +  +PTP+ S D+E G+ 
Sbjct: 1   MRTYAIVLITSGCVIASAVILWCVCSYGGRKKKKTAPPTYTSSALRPTPRPSRDLELGEA 60

Query: 61  PKNNNNGGMTILGGAAAGLATAAVVTNLSSSGGGGGGGG-GGDSGSGDGGGGGCGGGGCG 120
                NGGMTIL GAAAGLATAAVVT+LS+ GGGGGGGG GGD G G  GGGGCGGG  G
Sbjct: 61  ----KNGGMTILAGAAAGLATAAVVTSLSNDGGGGGGGGEGGDDGGGGDGGGGCGGGCGG 120

Query: 121 GCGGGCGGGCG 126
           GCGGGCGGGCG
Sbjct: 121 GCGGGCGGGCG 127

BLAST of MELO3C016146.jh1 vs. ExPASy TrEMBL
Match: A0A1S3YHZ0 (zinc finger protein ZIC 2-like OS=Nicotiana tabacum OX=4097 GN=LOC107776358 PE=4 SV=1)

HSP 1 Score: 82.8 bits (203), Expect = 1.23e-17
Identity = 72/134 (53.73%), Postives = 87/134 (64.93%), Query Frame = 0

Query: 1   MKTYGIVLIACGSVIAAVMILWCVCKFGRSRKKKTITYNI-----PKPTPQRSLDIERGQ 60
           MK Y I LI CGSV A V+IL C+CK GR +K +  T N+     P P  Q + D+E+G+
Sbjct: 1   MKAYAIALIVCGSVAALVLILCCLCKGGRKKKSQPATRNVTGFAPPPPPLQANRDVEKGE 60

Query: 61  L-PKNN---NNGGMTILGGAAAGLATAAVVTNLSSSGGGGG------GGGGGDSGSGDGG 119
           + PK+     +GGM ILG  AA +ATAAV+T+  S GGGGG      GGG G  G G GG
Sbjct: 61  ITPKSTAVTKDGGMVILGATAATVATAAVITSAYSGGGGGGTSGSGGGGGCGSGGGGCGG 120

BLAST of MELO3C016146.jh1 vs. ExPASy TrEMBL
Match: A0A1U7W9C4 (zinc finger protein ZIC 2-like OS=Nicotiana sylvestris OX=4096 GN=LOC104221816 PE=4 SV=1)

HSP 1 Score: 76.6 bits (187), Expect = 2.76e-15
Identity = 72/132 (54.55%), Postives = 87/132 (65.91%), Query Frame = 0

Query: 1   MKTYGIVLIACGSVIAAVMILWCVCKFGRSRKKKTITYNI-----PKPTPQRSLDIERGQ 60
           MK Y I LI CGSV A V+IL C+CK GR +K +  T N+     P P  Q + D+E+G+
Sbjct: 1   MKAYAIALIVCGSVAALVLILCCLCKGGRKKKSQPATRNVTGFAPPPPPLQANRDVEKGE 60

Query: 61  L-PKNN---NNGGMTILGGAAAGLATAAVVTNLSSSGGGGGGGGGGDSGSGDGGGGGCGG 120
           + PK+     +GGM ILG  AA +ATAAV+T+  S     GGGGGG SGSG GGG G GG
Sbjct: 61  ITPKSTAVTKDGGMVILGATAATVATAAVITSAYS-----GGGGGGTSGSGGGGGCGSGG 120

Query: 121 GGCGGCGGGCGG 123
           GGCGG GGGCGG
Sbjct: 121 GGCGG-GGGCGG 126

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KGN53550.15.85e-5186.92hypothetical protein Csa_015259 [Cucumis sativus][more]
KAG6577050.14.20e-3066.15hypothetical protein SDJN03_24624, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_038889436.13.22e-2867.69acanthoscurrin-1-like [Benincasa hispida][more]
XP_023552868.12.32e-2765.91glycine-rich protein DOT1-like [Cucurbita pepo subsp. pepo][more]
XP_022931328.13.88e-2664.39glycine-rich protein 5-like [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A0A0KVE12.83e-5186.92Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G081280 PE=4 SV=1[more]
A0A6J1EY841.88e-2664.39glycine-rich protein 5-like OS=Cucurbita moschata OX=3662 GN=LOC111437551 PE=4 S... [more]
A0A6J1J4095.20e-2664.89glycine-rich protein 5-like OS=Cucurbita maxima OX=3661 GN=LOC111483210 PE=4 SV=... [more]
A0A1S3YHZ01.23e-1753.73zinc finger protein ZIC 2-like OS=Nicotiana tabacum OX=4097 GN=LOC107776358 PE=4... [more]
A0A1U7W9C42.76e-1554.55zinc finger protein ZIC 2-like OS=Nicotiana sylvestris OX=4096 GN=LOC104221816 P... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C016146.jh1.t1MELO3C016146.jh1.t1mRNA