MELO3C016133 (gene) Melon (DHL92) v4

Overview
NameMELO3C016133
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionTranscription factor bHLH36
Locationchr08: 27533531 .. 27533835 (-)
RNA-Seq ExpressionMELO3C016133
SyntenyMELO3C016133
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGACAAAGGCGTTGTTGAGTTAGAGAGAGAAACGGAGAGACAAAGAAGACAAGAAATTGGTGCTCTTTATATGTCTCTAAGAACCCTACTTCCTCTTGAATTTATCGAGGTAATTTGTGGGATTATGCATAGGGAAAGAGATAAAAGGAGGGAGAAGAAACGAAAAAATAAAGATCAAGAACTCATAAGCGATGCTATGGGTGTCCTCGCCGTGGGTCTCTATTGCCAAGAAGAAAGGACGTGGAGATGAGAAGAATGGGGTTAAGGTTGGGGTTCTCGTTATGCGTCGTTCGTCGTTCGTGA

mRNA sequence

ATGGACAAAGGCGTTGTTGAGTTAGAGAGAGAAACGGAGAGACAAAGAAGACAAGAAATTGGTGCTCTTTATATGTCTCTAAGAACCCTACTTCCTCTTGAATTTATCGAGGTAATTTGTGGGATTATGCATAGGGAAAGAGATAAAAGGAGGGAGAAGAAACGAAAAAATAAAGATCAAGAACTCATAAGCGATGCTATGGGTGTCCTCGCCGTGGGTCTCTATTGCCAAGAAGAAAGGACGTGGAGATGAGAAGAATGGGGTTAAGGTTGGGGTTCTCGTTATGCGTCGTTCGTCGTTCGTGA

Coding sequence (CDS)

ATGGACAAAGGCGTTGTTGAGTTAGAGAGAGAAACGGAGAGACAAAGAAGACAAGAAATTGGTGCTCTTTATATGTCTCTAAGAACCCTACTTCCTCTTGAATTTATCGAGGTAATTTGTGGGATTATGCATAGGGAAAGAGATAAAAGGAGGGAGAAGAAACGAAAAAATAAAGATCAAGAACTCATAAGCGATGCTATGGGTGTCCTCGCCGTGGGTCTCTATTGCCAAGAAGAAAGGACGTGGAGATGA

Protein sequence

MDKGVVELERETERQRRQEIGALYMSLRTLLPLEFIEVICGIMHRERDKRREKKRKNKDQELISDAMGVLAVGLYCQEERTWR
Homology
BLAST of MELO3C016133 vs. NCBI nr
Match: TYK30150.1 (transcription factor bHLH36 [Cucumis melo var. makuwa])

HSP 1 Score: 129.8 bits (325), Expect = 1.1e-26
Identity = 67/83 (80.72%), Postives = 71/83 (85.54%), Query Frame = 0

Query: 1  MDKGVVELERETERQRRQEIGALYMSLRTLLPLEFIEVICGIMHRERDKRREKKRKNKDQ 60
          MDKG+VEL RE ERQRRQEIGALYMSLRTLLPLEFI+VI G +HR RDK REKKRK KDQ
Sbjct: 1  MDKGIVELGRERERQRRQEIGALYMSLRTLLPLEFIKVIYGTLHRGRDKWREKKRKKKDQ 60

Query: 61 ELISDAMGVLAVGLYCQEERTWR 84
          EL  DAMG+LAVGL  QEE TWR
Sbjct: 61 ELTGDAMGLLAVGLRHQEEMTWR 83

BLAST of MELO3C016133 vs. NCBI nr
Match: KAA0065871.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK20283.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 120.6 bits (301), Expect = 6.6e-24
Identity = 61/79 (77.22%), Postives = 70/79 (88.61%), Query Frame = 0

Query: 1  MDKGVVELERETERQRRQEIGALYMSLRTLLPLEFIEVICGIMHRERDKRREKKRKNKDQ 60
          MDKGVV+LERE ERQRRQEIGALYM++RTLL LEFI+VICGI+HRERDK REKKRK KDQ
Sbjct: 1  MDKGVVKLERERERQRRQEIGALYMTIRTLLSLEFIKVICGIVHRERDKWREKKRKKKDQ 60

Query: 61 ELISDAMGVLAVGLYCQEE 80
          ELI D MG+LAV L  +++
Sbjct: 61 ELIGDDMGLLAVDLLTEKK 79

BLAST of MELO3C016133 vs. NCBI nr
Match: KAA0033316.1 (transcription factor bHLH36-like [Cucumis melo var. makuwa] >TYK21590.1 transcription factor bHLH36-like [Cucumis melo var. makuwa])

HSP 1 Score: 108.2 bits (269), Expect = 3.4e-20
Identity = 55/75 (73.33%), Postives = 61/75 (81.33%), Query Frame = 0

Query: 1  MDKGVVELERETERQRRQEIGALYMSLRTLLPLEFIEVICGIMHRERDKRREKKRKNKDQ 60
          MDK VVEL RE ERQRRQEI ALYM LR LLPLEFI+VICG +HR RDK+REKKRK KDQ
Sbjct: 1  MDKDVVELGRERERQRRQEISALYMPLRILLPLEFIKVICGTVHRGRDKQREKKRKKKDQ 60

Query: 61 ELISDAMGVLAVGLY 76
          EL  D +G+  VGL+
Sbjct: 61 ELTGDDIGLFVVGLH 75

BLAST of MELO3C016133 vs. NCBI nr
Match: KAA0044825.1 (transcription factor bHLH36-like [Cucumis melo var. makuwa] >TYK16639.1 transcription factor bHLH36-like [Cucumis melo var. makuwa])

HSP 1 Score: 65.9 bits (159), Expect = 1.9e-07
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 0

Query: 1  MDKGVVELERETERQRRQEIGALYMSLRTLLPLEFIEV 39
          MDKGVVEL RE ERQRRQEI ALYMSLRTLLPLEFI+V
Sbjct: 6  MDKGVVELGRERERQRRQEISALYMSLRTLLPLEFIKV 43

BLAST of MELO3C016133 vs. ExPASy Swiss-Prot
Match: Q9FLI1 (Transcription factor bHLH36 OS=Arabidopsis thaliana OX=3702 GN=BHLH36 PE=2 SV=1)

HSP 1 Score: 45.1 bits (105), Expect = 4.6e-04
Identity = 21/30 (70.00%), Postives = 26/30 (86.67%), Query Frame = 0

Query: 8  LERETERQRRQEIGALYMSLRTLLPLEFIE 38
          + RETERQRRQE+ +LY SLR+LLPL FI+
Sbjct: 5  MHRETERQRRQEMASLYASLRSLLPLHFIK 34

BLAST of MELO3C016133 vs. ExPASy TrEMBL
Match: A0A5D3E3K5 (Transcription factor bHLH36 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G001340 PE=4 SV=1)

HSP 1 Score: 129.8 bits (325), Expect = 5.3e-27
Identity = 67/83 (80.72%), Postives = 71/83 (85.54%), Query Frame = 0

Query: 1  MDKGVVELERETERQRRQEIGALYMSLRTLLPLEFIEVICGIMHRERDKRREKKRKNKDQ 60
          MDKG+VEL RE ERQRRQEIGALYMSLRTLLPLEFI+VI G +HR RDK REKKRK KDQ
Sbjct: 1  MDKGIVELGRERERQRRQEIGALYMSLRTLLPLEFIKVIYGTLHRGRDKWREKKRKKKDQ 60

Query: 61 ELISDAMGVLAVGLYCQEERTWR 84
          EL  DAMG+LAVGL  QEE TWR
Sbjct: 61 ELTGDAMGLLAVGLRHQEEMTWR 83

BLAST of MELO3C016133 vs. ExPASy TrEMBL
Match: A0A5A7VJK9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold708G00020 PE=3 SV=1)

HSP 1 Score: 120.6 bits (301), Expect = 3.2e-24
Identity = 61/79 (77.22%), Postives = 70/79 (88.61%), Query Frame = 0

Query: 1  MDKGVVELERETERQRRQEIGALYMSLRTLLPLEFIEVICGIMHRERDKRREKKRKNKDQ 60
          MDKGVV+LERE ERQRRQEIGALYM++RTLL LEFI+VICGI+HRERDK REKKRK KDQ
Sbjct: 1  MDKGVVKLERERERQRRQEIGALYMTIRTLLSLEFIKVICGIVHRERDKWREKKRKKKDQ 60

Query: 61 ELISDAMGVLAVGLYCQEE 80
          ELI D MG+LAV L  +++
Sbjct: 61 ELIGDDMGLLAVDLLTEKK 79

BLAST of MELO3C016133 vs. ExPASy TrEMBL
Match: A0A5A7STJ5 (Transcription factor bHLH36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold275G00940 PE=4 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 1.6e-20
Identity = 55/75 (73.33%), Postives = 61/75 (81.33%), Query Frame = 0

Query: 1  MDKGVVELERETERQRRQEIGALYMSLRTLLPLEFIEVICGIMHRERDKRREKKRKNKDQ 60
          MDK VVEL RE ERQRRQEI ALYM LR LLPLEFI+VICG +HR RDK+REKKRK KDQ
Sbjct: 1  MDKDVVELGRERERQRRQEISALYMPLRILLPLEFIKVICGTVHRGRDKQREKKRKKKDQ 60

Query: 61 ELISDAMGVLAVGLY 76
          EL  D +G+  VGL+
Sbjct: 61 ELTGDDIGLFVVGLH 75

BLAST of MELO3C016133 vs. ExPASy TrEMBL
Match: A0A5A7TTV0 (Transcription factor bHLH36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold21G004670 PE=4 SV=1)

HSP 1 Score: 65.9 bits (159), Expect = 9.4e-08
Identity = 34/38 (89.47%), Postives = 35/38 (92.11%), Query Frame = 0

Query: 1  MDKGVVELERETERQRRQEIGALYMSLRTLLPLEFIEV 39
          MDKGVVEL RE ERQRRQEI ALYMSLRTLLPLEFI+V
Sbjct: 6  MDKGVVELGRERERQRRQEISALYMSLRTLLPLEFIKV 43

BLAST of MELO3C016133 vs. TAIR 10
Match: AT5G51780.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 45.1 bits (105), Expect = 3.3e-05
Identity = 21/30 (70.00%), Postives = 26/30 (86.67%), Query Frame = 0

Query: 8  LERETERQRRQEIGALYMSLRTLLPLEFIE 38
          + RETERQRRQE+ +LY SLR+LLPL FI+
Sbjct: 5  MHRETERQRRQEMASLYASLRSLLPLHFIK 34

BLAST of MELO3C016133 vs. TAIR 10
Match: AT4G25400.1 (basic helix-loop-helix (bHLH) DNA-binding superfamily protein )

HSP 1 Score: 40.8 bits (94), Expect = 6.2e-04
Identity = 18/30 (60.00%), Postives = 26/30 (86.67%), Query Frame = 0

Query: 8  LERETERQRRQEIGALYMSLRTLLPLEFIE 38
          + +E E++RRQE+ +LY SLR+LLPLEFI+
Sbjct: 5  VHKEIEKRRRQEMASLYASLRSLLPLEFIQ 34

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK30150.11.1e-2680.72transcription factor bHLH36 [Cucumis melo var. makuwa][more]
KAA0065871.16.6e-2477.22retrotransposon protein [Cucumis melo var. makuwa] >TYK20283.1 retrotransposon p... [more]
KAA0033316.13.4e-2073.33transcription factor bHLH36-like [Cucumis melo var. makuwa] >TYK21590.1 transcri... [more]
KAA0044825.11.9e-0789.47transcription factor bHLH36-like [Cucumis melo var. makuwa] >TYK16639.1 transcri... [more]
Match NameE-valueIdentityDescription
Q9FLI14.6e-0470.00Transcription factor bHLH36 OS=Arabidopsis thaliana OX=3702 GN=BHLH36 PE=2 SV=1[more]
Match NameE-valueIdentityDescription
A0A5D3E3K55.3e-2780.72Transcription factor bHLH36 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaf... [more]
A0A5A7VJK93.2e-2477.22Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7STJ51.6e-2073.33Transcription factor bHLH36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A5A7TTV09.4e-0889.47Transcription factor bHLH36-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
Match NameE-valueIdentityDescription
AT5G51780.13.3e-0570.00basic helix-loop-helix (bHLH) DNA-binding superfamily protein [more]
AT4G25400.16.2e-0460.00basic helix-loop-helix (bHLH) DNA-binding superfamily protein [more]
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C016133.1MELO3C016133.1mRNA