MELO3C015990 (gene) Melon (DHL92) v4

Overview
NameMELO3C015990
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionKeratin, type I cytoskeletal 9-like
Locationchr01: 31303666 .. 31304155 (-)
RNA-Seq ExpressionMELO3C015990
SyntenyMELO3C015990
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
AAACCCAACACAATTTTCTTCCTTGATTCTCATTTGTGATAACAGCTTGTGCCCTTCAACTACCATGGCCATGACAACAGGTTTCAAGGTTTTCCATATCCTTTTGTTAATGTTGGTCTGCCAATGTTATGCCAAGGTAGATACCAAACAAAAAGTCAATGGCTTTTTCGACGACTATGATCGTGGTGACTATGATAGATCATTTGGATCAGGTGGTGTTGGTGTTCTTTCGGGCAAGATTGGCACCACATTAATTCTAGATATGATCAACCCTCCAAAATTGGCACCAATCGGATCTAAAGTTCCAATAAATGCAGGTGACGAAGGCTCTGTTTTTGGTATGGGAAAAACTAAGAACACCGAAGGTGAAGTTGATTCTAAGGATCTAGAAGTTAATTTGAAGAATGTTGGAAGAATCGATGTTTCTGACAATGGAATAAATAATCGAAAGATCAAAGATGGGATTGTTTCAACTTTCAAGAGATGGTAA

mRNA sequence

AAACCCAACACAATTTTCTTCCTTGATTCTCATTTGTGATAACAGCTTGTGCCCTTCAACTACCATGGCCATGACAACAGGTTTCAAGGTTTTCCATATCCTTTTGTTAATGTTGGTCTGCCAATGTTATGCCAAGGTAGATACCAAACAAAAAGTCAATGGCTTTTTCGACGACTATGATCGTGGTGACTATGATAGATCATTTGGATCAGGTGGTGTTGGTGTTCTTTCGGGCAAGATTGGCACCACATTAATTCTAGATATGATCAACCCTCCAAAATTGGCACCAATCGGATCTAAAGTTCCAATAAATGCAGGTGACGAAGGCTCTGTTTTTGGTATGGGAAAAACTAAGAACACCGAAGGTGAAGTTGATTCTAAGGATCTAGAAGTTAATTTGAAGAATGTTGGAAGAATCGATGTTTCTGACAATGGAATAAATAATCGAAAGATCAAAGATGGGATTGTTTCAACTTTCAAGAGATGGTAA

Coding sequence (CDS)

ATGGCCATGACAACAGGTTTCAAGGTTTTCCATATCCTTTTGTTAATGTTGGTCTGCCAATGTTATGCCAAGGTAGATACCAAACAAAAAGTCAATGGCTTTTTCGACGACTATGATCGTGGTGACTATGATAGATCATTTGGATCAGGTGGTGTTGGTGTTCTTTCGGGCAAGATTGGCACCACATTAATTCTAGATATGATCAACCCTCCAAAATTGGCACCAATCGGATCTAAAGTTCCAATAAATGCAGGTGACGAAGGCTCTGTTTTTGGTATGGGAAAAACTAAGAACACCGAAGGTGAAGTTGATTCTAAGGATCTAGAAGTTAATTTGAAGAATGTTGGAAGAATCGATGTTTCTGACAATGGAATAAATAATCGAAAGATCAAAGATGGGATTGTTTCAACTTTCAAGAGATGGTAA

Protein sequence

MAMTTGFKVFHILLLMLVCQCYAKVDTKQKVNGFFDDYDRGDYDRSFGSGGVGVLSGKIGTTLILDMINPPKLAPIGSKVPINAGDEGSVFGMGKTKNTEGEVDSKDLEVNLKNVGRIDVSDNGINNRKIKDGIVSTFKRW
Homology
BLAST of MELO3C015990 vs. NCBI nr
Match: KAA0067981.1 (keratin, type I cytoskeletal 9-like [Cucumis melo var. makuwa])

HSP 1 Score: 280.0 bits (715), Expect = 1.1e-71
Identity = 138/141 (97.87%), Postives = 140/141 (99.29%), Query Frame = 0

Query: 1   MAMTTGFKVFHILLLMLVCQCYAKVDTKQKVNGFFDDYDRGDYDRSFGSGGVGVLSGKIG 60
           MAMT GFKVFHILLLMLVCQCYAKVDTKQKVNGFFDDYDRG+YDRSFGSGGVGVLSGKIG
Sbjct: 1   MAMTAGFKVFHILLLMLVCQCYAKVDTKQKVNGFFDDYDRGEYDRSFGSGGVGVLSGKIG 60

Query: 61  TTLILDMINPPKLAPIGSKVPINAGDEGSVFGMGKTKNTEGEVDSKDLEVNLKNVGRIDV 120
           TTLILDMINPPKLAPIGSKVPINAGDEGSVFGMGKTKNTEGEV+SKDLEVNLKNVGRIDV
Sbjct: 61  TTLILDMINPPKLAPIGSKVPINAGDEGSVFGMGKTKNTEGEVESKDLEVNLKNVGRIDV 120

Query: 121 SDNGINNRKIKDGIVSTFKRW 142
           SDNGINNRKIKDGIVSTFKRW
Sbjct: 121 SDNGINNRKIKDGIVSTFKRW 141

BLAST of MELO3C015990 vs. NCBI nr
Match: TYK18142.1 (keratin, type I cytoskeletal 9-like [Cucumis melo var. makuwa])

HSP 1 Score: 279.6 bits (714), Expect = 1.4e-71
Identity = 137/141 (97.16%), Postives = 140/141 (99.29%), Query Frame = 0

Query: 1   MAMTTGFKVFHILLLMLVCQCYAKVDTKQKVNGFFDDYDRGDYDRSFGSGGVGVLSGKIG 60
           MAMT GFKVFHILLLMLVCQCYAKVDTKQK+NGFFDDYDRG+YDRSFGSGGVGVLSGKIG
Sbjct: 1   MAMTAGFKVFHILLLMLVCQCYAKVDTKQKINGFFDDYDRGEYDRSFGSGGVGVLSGKIG 60

Query: 61  TTLILDMINPPKLAPIGSKVPINAGDEGSVFGMGKTKNTEGEVDSKDLEVNLKNVGRIDV 120
           TTLILDMINPPKLAPIGSKVPINAGDEGSVFGMGKTKNTEGEV+SKDLEVNLKNVGRIDV
Sbjct: 61  TTLILDMINPPKLAPIGSKVPINAGDEGSVFGMGKTKNTEGEVESKDLEVNLKNVGRIDV 120

Query: 121 SDNGINNRKIKDGIVSTFKRW 142
           SDNGINNRKIKDGIVSTFKRW
Sbjct: 121 SDNGINNRKIKDGIVSTFKRW 141

BLAST of MELO3C015990 vs. NCBI nr
Match: KGN44951.1 (hypothetical protein Csa_015905 [Cucumis sativus])

HSP 1 Score: 76.3 bits (186), Expect = 2.4e-10
Identity = 42/68 (61.76%), Postives = 48/68 (70.59%), Query Frame = 0

Query: 58  KIGTTLILDMINPPKL----APIGSKVPINAGDEGSVFGMGKTKNTEGEVDSKDLEVNLK 117
           KI TT +++  NPP+L    AP+  +VPINAGDEG VFG GK KN   EV  KD  VNLK
Sbjct: 29  KIDTTSVIETTNPPELASSIAPVKFEVPINAGDEGLVFGFGKIKNIGSEVIYKDHVVNLK 88

Query: 118 NVGRIDVS 122
           NVGRIDVS
Sbjct: 89  NVGRIDVS 96

BLAST of MELO3C015990 vs. NCBI nr
Match: XP_031745100.1 (cell wall protein IFF6 [Cucumis sativus] >KAE8646344.1 hypothetical protein Csa_016497 [Cucumis sativus])

HSP 1 Score: 65.1 bits (157), Expect = 5.6e-07
Identity = 56/139 (40.29%), Postives = 75/139 (53.96%), Query Frame = 0

Query: 1   MAMTTGFKVFHILLLMLVCQCYAKVD-TKQKVNGFFDDYDRGDYDRSFGSGGVGVLSG-K 60
           M++  G K+FH +LLML  Q  AKVD T + V GFF D++ G    SFGSGG G++ G K
Sbjct: 1   MSIAIGSKLFHTVLLMLAWQYCAKVDATFKDVTGFF-DFNLG----SFGSGGAGIMGGTK 60

Query: 61  IGTTLILDMINPPKLAPIGSKVPINAGDEG-SVFGMGKTKNTEGEVDSKD--LEVNLKNV 120
            G +        P +AP+G   P N  D G S F    +KN  G VD  +   ++NLK  
Sbjct: 61  NGGSPANAPEMAPGIAPVGFDTPTNNEDSGASSFDFDFSKNINGGVDLSNGAHKLNLKGS 120

Query: 121 GRIDVS---DNGINNRKIK 132
           G +D+S   D   +  KIK
Sbjct: 121 GTLDLSHKVDVSNDGHKIK 134

BLAST of MELO3C015990 vs. NCBI nr
Match: TYK18141.1 (keratin, type I cytoskeletal 9-like [Cucumis melo var. makuwa])

HSP 1 Score: 63.9 bits (154), Expect = 1.2e-06
Identity = 54/125 (43.20%), Postives = 67/125 (53.60%), Query Frame = 0

Query: 1   MAMTTGFKVFHILLLMLVCQCYAKVD-TKQKVNGFFDDYDRGDYDRSFGSGGVGVLSG-K 60
           M MT G K+FHI+LL+   Q   KVD T Q V GFF D+D G    SFGSGGVG+L   K
Sbjct: 9   MPMTRGSKLFHIILLVFSWQYCTKVDATFQDVTGFF-DFDFG----SFGSGGVGILDDTK 68

Query: 61  IGTTLILDMINPPKLAPIGSKVPINAGDEGSVFGMGKTKNTEGEV--DSKDLEVNLKNVG 120
            G +      + P +AP       N  DE S F    TKN  G V   + + ++NLK  G
Sbjct: 69  KGVSA---PASAPSIAPTSFD---NKDDEASSFDFEFTKNINGGVGASNDNHKINLKGSG 122

Query: 121 RIDVS 122
            +DVS
Sbjct: 129 TLDVS 122

BLAST of MELO3C015990 vs. ExPASy TrEMBL
Match: A0A5A7VQT6 (Keratin, type I cytoskeletal 9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001690 PE=4 SV=1)

HSP 1 Score: 280.0 bits (715), Expect = 5.4e-72
Identity = 138/141 (97.87%), Postives = 140/141 (99.29%), Query Frame = 0

Query: 1   MAMTTGFKVFHILLLMLVCQCYAKVDTKQKVNGFFDDYDRGDYDRSFGSGGVGVLSGKIG 60
           MAMT GFKVFHILLLMLVCQCYAKVDTKQKVNGFFDDYDRG+YDRSFGSGGVGVLSGKIG
Sbjct: 1   MAMTAGFKVFHILLLMLVCQCYAKVDTKQKVNGFFDDYDRGEYDRSFGSGGVGVLSGKIG 60

Query: 61  TTLILDMINPPKLAPIGSKVPINAGDEGSVFGMGKTKNTEGEVDSKDLEVNLKNVGRIDV 120
           TTLILDMINPPKLAPIGSKVPINAGDEGSVFGMGKTKNTEGEV+SKDLEVNLKNVGRIDV
Sbjct: 61  TTLILDMINPPKLAPIGSKVPINAGDEGSVFGMGKTKNTEGEVESKDLEVNLKNVGRIDV 120

Query: 121 SDNGINNRKIKDGIVSTFKRW 142
           SDNGINNRKIKDGIVSTFKRW
Sbjct: 121 SDNGINNRKIKDGIVSTFKRW 141

BLAST of MELO3C015990 vs. ExPASy TrEMBL
Match: A0A5D3D2L0 (Keratin, type I cytoskeletal 9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G00730 PE=4 SV=1)

HSP 1 Score: 279.6 bits (714), Expect = 7.0e-72
Identity = 137/141 (97.16%), Postives = 140/141 (99.29%), Query Frame = 0

Query: 1   MAMTTGFKVFHILLLMLVCQCYAKVDTKQKVNGFFDDYDRGDYDRSFGSGGVGVLSGKIG 60
           MAMT GFKVFHILLLMLVCQCYAKVDTKQK+NGFFDDYDRG+YDRSFGSGGVGVLSGKIG
Sbjct: 1   MAMTAGFKVFHILLLMLVCQCYAKVDTKQKINGFFDDYDRGEYDRSFGSGGVGVLSGKIG 60

Query: 61  TTLILDMINPPKLAPIGSKVPINAGDEGSVFGMGKTKNTEGEVDSKDLEVNLKNVGRIDV 120
           TTLILDMINPPKLAPIGSKVPINAGDEGSVFGMGKTKNTEGEV+SKDLEVNLKNVGRIDV
Sbjct: 61  TTLILDMINPPKLAPIGSKVPINAGDEGSVFGMGKTKNTEGEVESKDLEVNLKNVGRIDV 120

Query: 121 SDNGINNRKIKDGIVSTFKRW 142
           SDNGINNRKIKDGIVSTFKRW
Sbjct: 121 SDNGINNRKIKDGIVSTFKRW 141

BLAST of MELO3C015990 vs. ExPASy TrEMBL
Match: A0A0A0KAY1 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398130 PE=4 SV=1)

HSP 1 Score: 76.3 bits (186), Expect = 1.2e-10
Identity = 42/68 (61.76%), Postives = 48/68 (70.59%), Query Frame = 0

Query: 58  KIGTTLILDMINPPKL----APIGSKVPINAGDEGSVFGMGKTKNTEGEVDSKDLEVNLK 117
           KI TT +++  NPP+L    AP+  +VPINAGDEG VFG GK KN   EV  KD  VNLK
Sbjct: 29  KIDTTSVIETTNPPELASSIAPVKFEVPINAGDEGLVFGFGKIKNIGSEVIYKDHVVNLK 88

Query: 118 NVGRIDVS 122
           NVGRIDVS
Sbjct: 89  NVGRIDVS 96

BLAST of MELO3C015990 vs. ExPASy TrEMBL
Match: A0A0A0K5G8 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398120 PE=4 SV=1)

HSP 1 Score: 65.1 bits (157), Expect = 2.7e-07
Identity = 56/139 (40.29%), Postives = 75/139 (53.96%), Query Frame = 0

Query: 1   MAMTTGFKVFHILLLMLVCQCYAKVD-TKQKVNGFFDDYDRGDYDRSFGSGGVGVLSG-K 60
           M++  G K+FH +LLML  Q  AKVD T + V GFF D++ G    SFGSGG G++ G K
Sbjct: 1   MSIAIGSKLFHTVLLMLAWQYCAKVDATFKDVTGFF-DFNLG----SFGSGGAGIMGGTK 60

Query: 61  IGTTLILDMINPPKLAPIGSKVPINAGDEG-SVFGMGKTKNTEGEVDSKD--LEVNLKNV 120
            G +        P +AP+G   P N  D G S F    +KN  G VD  +   ++NLK  
Sbjct: 61  NGGSPANAPEMAPGIAPVGFDTPTNNEDSGASSFDFDFSKNINGGVDLSNGAHKLNLKGS 120

Query: 121 GRIDVS---DNGINNRKIK 132
           G +D+S   D   +  KIK
Sbjct: 121 GTLDLSHKVDVSNDGHKIK 134

BLAST of MELO3C015990 vs. ExPASy TrEMBL
Match: A0A5A7VI20 (Keratin, type I cytoskeletal 9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G001710 PE=4 SV=1)

HSP 1 Score: 63.9 bits (154), Expect = 6.0e-07
Identity = 54/125 (43.20%), Postives = 67/125 (53.60%), Query Frame = 0

Query: 1   MAMTTGFKVFHILLLMLVCQCYAKVD-TKQKVNGFFDDYDRGDYDRSFGSGGVGVLSG-K 60
           M MT G K+FHI+LL+   Q   KVD T Q V GFF D+D G    SFGSGGVG+L   K
Sbjct: 9   MPMTRGSKLFHIILLVFSWQYCTKVDATFQDVTGFF-DFDFG----SFGSGGVGILDDTK 68

Query: 61  IGTTLILDMINPPKLAPIGSKVPINAGDEGSVFGMGKTKNTEGEV--DSKDLEVNLKNVG 120
            G +      + P +AP       N  DE S F    TKN  G V   + + ++NLK  G
Sbjct: 69  NGVSA---PASAPSIAPTSFD---NKDDEASSFDFEFTKNINGGVGASNDNHKINLKGSG 122

Query: 121 RIDVS 122
            +DVS
Sbjct: 129 TLDVS 122

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0067981.11.1e-7197.87keratin, type I cytoskeletal 9-like [Cucumis melo var. makuwa][more]
TYK18142.11.4e-7197.16keratin, type I cytoskeletal 9-like [Cucumis melo var. makuwa][more]
KGN44951.12.4e-1061.76hypothetical protein Csa_015905 [Cucumis sativus][more]
XP_031745100.15.6e-0740.29cell wall protein IFF6 [Cucumis sativus] >KAE8646344.1 hypothetical protein Csa_... [more]
TYK18141.11.2e-0643.20keratin, type I cytoskeletal 9-like [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VQT65.4e-7297.87Keratin, type I cytoskeletal 9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
A0A5D3D2L07.0e-7297.16Keratin, type I cytoskeletal 9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5... [more]
A0A0A0KAY11.2e-1061.76Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398130 PE=4 SV=1[more]
A0A0A0K5G82.7e-0740.29Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G398120 PE=4 SV=1[more]
A0A5A7VI206.0e-0743.20Keratin, type I cytoskeletal 9-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C015990.1MELO3C015990.1mRNA