MELO3C015952 (gene) Melon (DHL92) v4

Overview


Name	MELO3C015952
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Two-component response regulator EHD1-like
Location	chr01: 30989649 .. 30991875 (+)
RNA-Seq Expression	MELO3C015952
Synteny	MELO3C015952

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CCTTCCTTCTTCAAATTCTTCATATTCACTTTCTTGATCACTCTCTGTTTTTATTTCGGTTCTCTTCCCATATTTAATAATGGTTTCATTGAATATACCAAACAATTTTGATCCATCTCCCTACGTAGCCTTGGTGGTTGGTGATGATTATAGTACTCATCTCTTAGGATGGGAAAACACTCTCACCTCAAATGGCTATCAAGGTTTTTATTTTTCATTTTTTTTCATTTTTTTTCATAGCCATTAATATATTATTTATGAAACTTTTCTTGACTCGCGTCTTCTTTTTCGTCTTTGAACAGTGTTAAGATCACAAAATCTTGAGCAAGCTTTAGCTATGATCCTCGATCCCGAAACCATAATTGGAATTATTGTTTGTGGAATTCCTATTTCAAATATTGGAGTTCTTAATCTAATAAGAGCTGCCAAATGTAAACTCGAGGTTCCTGTTATTTGTAAGTACATTTTTTTTCTTTTTTTTCTTTTAATTTTTTCGAATATCGAAAGACAGTTGAATATAGTATATGAAAGAGAAACTACGAAAATAATTCAAACTTGCGTTTGGTGGGTATCGATCCACAACAAAGTCTGATTCTTTATATGTTTGTAAATTTATTTGAGGAGAGATTATTAAAACGTTTGATTTTTTTTTTAAAATGGTATTGAACTTGAATTCGAATTTTCCTTCGTGGCCATCCACAACTCGTTTTAGATCTCAAAATCAATTCACTCTCAGTTCTCATTCTTTTTCTTTCTTGAAAATTAAATCCTAATTGAATCAACTTGTTTGGGTTAACATTAATGTTGTTGGTGATTTTTTTTTTTTTTTTTTCATTTTTTTATCTTAACAGTGATGGTTTCGGATCGTAGTGATATAGCTACCATGAGAGAGACTATGAGCGGTGCAGCTCATTGTGTAATACCCGAGCTTCCTTTTGGAGTTATAAAAGATTTTTGGCAACGTTTGCCTAGAACTCGTAGGAATGACTACTATTCATCTGTTTACTCACCTCAAACTGAATCAACTACAAGGAAAGTGCCACCGTTCAAAGCCATTCGAGAAACTCAGACCAAATACAGAAGAGGACCGAGTTTTTTGTCTAACCGTAACACTTCTTCAGTTAAAAGTCATCATCATGTTATTCCAACCACGGCATACGGAGGAGGATTGAATAATTGTTATAACCCTTCTTTAGATAAAAGTCATTATCATGTTCCAACCACTGCATATGGAAGAGGATTGAGTAATTTTTCTAACCCTAACACTTCTTTATATAAAAGTCATCATCATGTTATTCCAATCACTGCATACGGAAGAGGGTTGAATAATTGTTATAACCCTAACGGTTCTTTAGATAAAAGTCATTATCATGTTCCAACCGCTGCATATGGAGGAGGATTGAGTAATTGTTCTAACCCTAACACTTCTTTAGGAAGAGGATTGAATAATTGTTATAACCCTAACAGTTCTTTAGATAAAAGTCATTATCATGTTCCAACCACTTCATACGGAGGACGATTGAATAATTGTTCTAACCCTAATATTGATCATTCAAAGATAAGAGAAGAAAATAGTGAGGGTTTGGATCATGATCTGGATGATCGCCATAAGTTCGTTTTCAAAAAGAGACGTTTTATTTGGACTAAGGAATATCATCAAATCTTTTCAGAAGGCATCGTTCACATCACTTTGCAAGGAAAAAGTAAGTACTTTGTATTAATTACAAATATGTTTTAATTTAAGTCAGGTTAATGTGTGTTTACTTAATTAATTTAGAATTGTTTTGATTAATGTAGAAGTTGTTCCTGCTACTCTCTTGAAGTATATGCACAGTAAAGGTGTTTCACATGTAAGTAGAGAAAATGTTGCAAGTCATCTTCAGGTACTTAATTTTTTTTAGAAAAAAACACTATTGTATATTTCTTTCTTTTTTATTTATTTAACATAATGGATAATTTGTTTTGTTTTTGCAGAAGTATAGGATGCATAATAAAAAATATTCACATGGAGGTGGAGATTTTGCAAATACTGATGTGGTCAGTACTGATACACAACCATCTAAGGAAACTGATGACTGGTGGGATACACTTGAAGACATACCAACAGGTTTGGAGAATAAATCAACCAGCATTTGGCCAGATATTATTGATGAATTTATAGATAACAATACAATCCCAATGGAAAATTCTGATCAACCTCCACAACTAGACGATGATCAAGAAAGTA

mRNA sequence

CCTTCCTTCTTCAAATTCTTCATATTCACTTTCTTGATCACTCTCTGTTTTTATTTCGGTTCTCTTCCCATATTTAATAATGGTTTCATTGAATATACCAAACAATTTTGATCCATCTCCCTACGTAGCCTTGGTGGTTGGTGATGATTATAGTACTCATCTCTTAGGATGGGAAAACACTCTCACCTCAAATGGCTATCAAGTGATGGTTTCGGATCGTAGTGATATAGCTACCATGAGAGAGACTATGAGCGGTGCAGCTCATTGTGTAATACCCGAGCTTCCTTTTGGAGTTATAAAAGATTTTTGGCAACGTTTGCCTAGAACTCGTAGGAATGACTACTATTCATCTGTTTACTCACCTCAAACTGAATCAACTACAAGGAAAGTGCCACCGTTCAAAGCCATTCGAGAAACTCAGACCAAATACAGAAGAGGACCGAAAGTTGTTCCTGCTACTCTCTTGAAGTATATGCACAGTAAAGGTGTTTCACATAAGTATAGGATGCATAATAAAAAATATTCACATGGAGGTGGAGATTTTGCAAATACTGATGTGGTCAGTACTGATACACAACCATCTAAGGAAACTGATGACTGGTGGGATACACTTGAAGACATACCAACAGGTTTGGAGAATAAATCAACCAGCATTTGGCCAGATATTATTGATGAATTTATAGATAACAATACAATCCCAATGGAAAATTCTGATCAACCTCCACAACTAGACGATGATCAAGAAAGTA

Coding sequence (CDS)

ATGGTTTCATTGAATATACCAAACAATTTTGATCCATCTCCCTACGTAGCCTTGGTGGTTGGTGATGATTATAGTACTCATCTCTTAGGATGGGAAAACACTCTCACCTCAAATGGCTATCAAGTGATGGTTTCGGATCGTAGTGATATAGCTACCATGAGAGAGACTATGAGCGGTGCAGCTCATTGTGTAATACCCGAGCTTCCTTTTGGAGTTATAAAAGATTTTTGGCAACGTTTGCCTAGAACTCGTAGGAATGACTACTATTCATCTGTTTACTCACCTCAAACTGAATCAACTACAAGGAAAGTGCCACCGTTCAAAGCCATTCGAGAAACTCAGACCAAATACAGAAGAGGACCGAAAGTTGTTCCTGCTACTCTCTTGAAGTATATGCACAGTAAAGGTGTTTCACATAAGTATAGGATGCATAATAAAAAATATTCACATGGAGGTGGAGATTTTGCAAATACTGATGTGGTCAGTACTGATACACAACCATCTAAGGAAACTGATGACTGGTGGGATACACTTGAAGACATACCAACAGGTTTGGAGAATAAATCAACCAGCATTTGGCCAGATATTATTGATGAATTTATAGATAACAATACAATCCCAATGGAAAATTCTGATCAACCTCCACAACTAGACGATGATCAAGAAAGT

Protein sequence

MVSLNIPNNFDPSPYVALVVGDDYSTHLLGWENTLTSNGYQVMVSDRSDIATMRETMSGAAHCVIPELPFGVIKDFWQRLPRTRRNDYYSSVYSPQTESTTRKVPPFKAIRETQTKYRRGPKVVPATLLKYMHSKGVSHKYRMHNKKYSHGGGDFANTDVVSTDTQPSKETDDWWDTLEDIPTGLENKSTSIWPDIIDEFIDNNTIPMENSDQPPQLDDDQES

Homology

[Close]

BLAST of MELO3C015952 vs. NCBI nr
Match: KAA0046667.1 (two-component response regulator EHD1-like [Cucumis melo var. makuwa] >TYK18202.1 two-component response regulator EHD1-like [Cucumis melo var. makuwa])

HSP 1 Score: 342.8 bits (878), Expect = 2.2e-90
Identity = 222/489 (45.40%), Postives = 222/489 (45.40%), Query Frame = 0


Query: 1   MVSLNIPNNFDPSPYVALVVGDDYSTHLLGWENTLTSNGYQV------------------ 60
           MV LNIPNNFDPSPYVALVVGDDYSTHLLGWENTLTSNGYQV                  
Sbjct: 1   MVPLNIPNNFDPSPYVALVVGDDYSTHLLGWENTLTSNGYQVLRSQNLEQALAMILDPET 60

Query: 61  ---------------------------------MVSDRSDIATMRETMSGAAHCVIPELP 120
                                            MVSDRSDIATMRETMSGAAHCVIPELP
Sbjct: 61  IIGIIVCGIPISNIGVLNLIRAAKCKLEVPVILMVSDRSDIATMRETMSGAAHCVIPELP 120

Query: 121 FGVIKDFWQRLPRTRRNDYYSSVYSPQTESTTRKVPPFKAIRETQTKYRRGP-------- 180
           FGVIKDFWQRLPRTRRNDYYSSVYSPQTESTTRKVPPFKAIRETQTKYRRGP        
Sbjct: 121 FGVIKDFWQRLPRTRRNDYYSSVYSPQTESTTRKVPPFKAIRETQTKYRRGPSFLSNRNT 180

Query: 181 ------------------------------------------------------------ 224
                                                                       
Sbjct: 181 SSVKSHHHVIPTTAYGGGLNNCYKPSLDKSHYHVPTTAYGRGLSNFSNPNTSLYKSHHHV 240

[Close]

BLAST of MELO3C015952 vs. NCBI nr
Match: XP_011659779.1 (two-component response regulator ARR1 [Cucumis sativus])

HSP 1 Score: 166.8 bits (421), Expect = 2.2e-37
Identity = 134/388 (34.54%), Postives = 160/388 (41.24%), Query Frame = 0


Query: 4   LNIPNNFDPSPYVALVVGDDYSTHLLGWENTLTSNGYQV--------------------- 63
           LNIPNN  P  Y  LVV  DY THLL  +NT TS GYQV                     
Sbjct: 5   LNIPNNLYPFQYKVLVVDYDY-THLLALDNTFTSLGYQVLTSQNPEHAMAMILNGNTRID 64

Query: 64  ------------------------------MVSDRSDIATMRETMSGAAHCVIPELPF-- 123
                                         M+SD +D  TMRE  +GAA CV+ +LP+  
Sbjct: 65  IIVCGIPCSNIGAFNLIRAAKWEFNIPVVLMLSDLNDKVTMREIANGAAQCVLAKLPYTD 124

Query: 124 -GVIKDFWQRLPRTRRNDYYSSVYSPQTESTTRKVPPFKAIRETQTKYRRGP-------- 183
              +K+ WQ +  TR +DYYSSVY PQ EST+R  P F  +R+T T Y R P        
Sbjct: 125 CQALKNLWQYVASTRSDDYYSSVYVPQIESTSRIEPSFNVVRDTPTTYGREPGSSSNPNT 184

Query: 184 ------------------------------------------------------------ 223
                                                                       
Sbjct: 185 SLDKSHYHVTTEYGGGFNNCSDPNLDLKKREENSEGLDNDHHHHTIVDRKRRFNWTEEYH 244

[Close]

BLAST of MELO3C015952 vs. NCBI nr
Match: XP_038896346.1 (two-component response regulator ARR14-like [Benincasa hispida])

HSP 1 Score: 64.7 bits (156), Expect = 1.2e-06
Identity = 51/164 (31.10%), Postives = 69/164 (42.07%), Query Frame = 0


Query: 1   MVSLNIPNNFDPSPYVALVVGDDYSTHLLGWENTLTSNGYQV------------------ 60
           M+ LNI NN        +++ DD  THL   EN LTS GYQV                  
Sbjct: 1   MLGLNISNNLYHRFSFHVLLVDDDCTHLSAVENVLTSFGYQVVKFQTPEYALATLKRQKF 60

Query: 61  -------------------------------MVSDRSDIATMRETMSGAAHCV--IPELP 114
                                          MVS+ S+    +E +SGAA CV  +P L 
Sbjct: 61  DIVVCGISTSKIGAFNLVRTAQEQFNIPVILMVSNISNKVAFQEILSGAAQCVAKLPALD 120

[Close]

BLAST of MELO3C015952 vs. ExPASy TrEMBL
Match: A0A5D3D2Q4 (Two-component response regulator EHD1-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001410 PE=4 SV=1)

HSP 1 Score: 342.8 bits (878), Expect = 1.1e-90
Identity = 222/489 (45.40%), Postives = 222/489 (45.40%), Query Frame = 0


Query: 1   MVSLNIPNNFDPSPYVALVVGDDYSTHLLGWENTLTSNGYQV------------------ 60
           MV LNIPNNFDPSPYVALVVGDDYSTHLLGWENTLTSNGYQV                  
Sbjct: 1   MVPLNIPNNFDPSPYVALVVGDDYSTHLLGWENTLTSNGYQVLRSQNLEQALAMILDPET 60

Query: 61  ---------------------------------MVSDRSDIATMRETMSGAAHCVIPELP 120
                                            MVSDRSDIATMRETMSGAAHCVIPELP
Sbjct: 61  IIGIIVCGIPISNIGVLNLIRAAKCKLEVPVILMVSDRSDIATMRETMSGAAHCVIPELP 120

Query: 121 FGVIKDFWQRLPRTRRNDYYSSVYSPQTESTTRKVPPFKAIRETQTKYRRGP-------- 180
           FGVIKDFWQRLPRTRRNDYYSSVYSPQTESTTRKVPPFKAIRETQTKYRRGP        
Sbjct: 121 FGVIKDFWQRLPRTRRNDYYSSVYSPQTESTTRKVPPFKAIRETQTKYRRGPSFLSNRNT 180

Query: 181 ------------------------------------------------------------ 224
                                                                       
Sbjct: 181 SSVKSHHHVIPTTAYGGGLNNCYKPSLDKSHYHVPTTAYGRGLSNFSNPNTSLYKSHHHV 240

[Close]

BLAST of MELO3C015952 vs. ExPASy TrEMBL
Match: A0A0A0K5M5 (Response regulatory domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G405910 PE=4 SV=1)

HSP 1 Score: 166.4 bits (420), Expect = 1.4e-37
Identity = 134/389 (34.45%), Postives = 160/389 (41.13%), Query Frame = 0


Query: 4   LNIPNNFDPSPYVALVVGDDYSTHLLGWENTLTSNGYQV--------------------- 63
           LNIPNN  P  Y  LVV  DY THLL  +NT TS GYQV                     
Sbjct: 5   LNIPNNLYPFQYKVLVVDYDY-THLLALDNTFTSLGYQVLTSQNPEHAMAMILNGNTRID 64

Query: 64  ------------------------------MVSDRSDIATMRETMSGAAHCVIPELPF-- 123
                                         M+SD +D  TMRE  +GAA CV+ +LP+  
Sbjct: 65  IIVCGIPCSNIGAFNLIRAAKWEFNIPVVLMLSDLNDKVTMREIANGAAQCVLAKLPYTD 124

Query: 124 -GVIKDFWQRLPRTRRNDYYSSVYSPQTESTTRKVPPFKAIRETQTKYRRGP-------- 183
              +K+ WQ +  TR +DYYSSVY PQ EST+R  P F  +R+T T Y R P        
Sbjct: 125 CQALKNLWQYVASTRSDDYYSSVYVPQIESTSRIEPSFNVVRDTPTTYGREPGSSSNPNT 184

Query: 184 ------------------------------------------------------------ 223
                                                                       
Sbjct: 185 SLDKSHYHVTTEYGGGFNNCSDPNLDLKKREENSEGLDNDHHHHTIVDRKRRFNWTEEYH 244

The following BLAST results are available for this feature:

BLAST of MELO3C015952 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0046667.1	2.2e-90	45.40	two-component response regulator EHD1-like [Cucumis melo var. makuwa] >TYK18202....	[more]
XP_011659779.1	2.2e-37	34.54	two-component response regulator ARR1 [Cucumis sativus]	[more]
XP_038896346.1	1.2e-06	31.10	two-component response regulator ARR14-like [Benincasa hispida]	[more]

BLAST of MELO3C015952 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C015952 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3D2Q4	1.1e-90	45.40	Two-component response regulator EHD1-like OS=Cucumis melo var. makuwa OX=119469...	[more]
A0A0A0K5M5	1.4e-37	34.45	Response regulatory domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_...	[more]

BLAST of MELO3C015952 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 204..223

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C015952.1	MELO3C015952.1	mRNA