MELO3C015937.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C015937.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionTranscription initiation factor TFIID subunit 13
Locationchr01: 32147837 .. 32152865 (-)
RNA-Seq ExpressionMELO3C015937.jh1
SyntenyMELO3C015937.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
GCCGAACCAAACCCTCGCCCCTCTCACGATCGACGACGCCATACCTTCCCTCTCTCGGCTGCCGTTCAACCGACGACGACGTCACTTCAACATCTAAGGAGAAGCTACTGCTGACTCTTTCGTAGTCACTCCCGGCCGCCGGTAAGTAACTTTTCTCTATTTCTCTATTTCTCTATTTTTCGGCTTCATCTCTCAGACTTGTTCAGTTGTTTGTGTACAGTTGTTTATTTCAGACGGCTTTCTCTCGGCTTCATTTGAGCTCTCATCGTCGTCATTTCCGGTAAGTAACATAAAGAACAAAGAATTAATTAGTTGAAGTTTATTCTTTGACAGTATATTGAATTTACTGTCTACAATGTTTGTGTATTGGCCTCCCAAGCGTTTGGAGCTATTTTTTCTGTTTGAAATATATCTCATTTACTTTGTTCTGTTTTGCCATCGATTAGTCATAGAAATTTATGTGATAATATGCATTTATATGAAGAGGAAAACGTTGTCCTAATTTTGCCAGGTATATTATTAAAACTAAGGCTACTCTTCTGAAACTTGGTGCGTTTCAATCGTATATTGCTTTTAGGAATATCTATTACCCTTGTTTCTAGAGTATTAGATGATGTTGGTTTCAGCGGTTGTCTAGCGTCATGGCTACCCATTAAGATTAGTTCAACAAACTACCAATGGCTACCTGCATCGCCACAATAATATTCAAATCGAAGTTACTCAGTTTAGTGATGTCTAGATTCAGTAATAAAATCGTATTCCTCTGCACTAAAATTCTGCCTTGATAAAAACTAGAAACATCATCATTGAGTGAAAGACATGGACGAAAACAGAGCAGTTTGGAGCTTCTACATTAAGGAAAGTCAAAAGACCAACATAACAAATGATCATCATCTTTTATCTTTTTACACATTCTTCTATTCTCTCTCTTGCATGCATATATATAACATCCCTTCTTCATTTTCAACCTCGATCTTCTGTCTCGCATCTTATTCCTAAATGGATCTATTATATGGATGACCCAAAATTTAGGGAGAAAATGAAATGTGTTGTGACCCACTCTTTTTGGAATTTAGATTTTCTTTTTTCTTTTTACTTACACTGTCCGCATAAAATTATCACTTTCTTGATCTCCTCTCTCAAACTCACTCTCGGTTTTTTCTCTTTCTCACTCTTTGTAATATGTGAGGGTGCTCACATTGAGTATAATAAAGTTAATTAAAAGAGTAACTTGGCTGAGTATAATCATCCTACTATTTTCATGGAATAAGTTTTCTATTCTTATAGGTACTAAAAAGACGTATTAATTTTATATGTGTTTAACTTGTGATAAAAACTAATCATATATAACCTAAGAAAGCAAATAAATGACAACAAACAAGGCAACACTAGAGATAATAGAAACTCATCATAGGGGTAATGACTTTGTTAATCGATATGGATTCCTACATCCCACATCTCGCCAAACCATAAAAACCCCATTTTTCTTTGAAGGGCGGATGGAGAAGGAACTCCTAACACATTTAAATTGTTTATATAGTCATGGTTGTTCCGATTTATATATAGGCTTTTTGTCTATAGAAAAGTCCCCCCATGAAATAGGAGATTTATATATAATATTACTAAGTTGGGTACCTGATATGAATTGTTTATATACTCATGGTTGTTCTGATTATGATGTTTCCATTCCTCTCACTGCTGTTGTTAGAAGAATCTTCAGCTTTTTTCACTTGAGTTGTTGTCGTTGAAGCCAATTTCTTTAATCTAGATATTGCAAAAAGCCATGTTGCCTGATATGGAATCTTGATTCTCTTATTTGCACCCTCATCCATCTTCATTCTACCATTCACAAACATTATGCAATCCATCAGGCACTCTTTTGCCAATCCTTTAACGACTTTCTGTTACCCTCTTCTTCTCCTTACTTCTGATCTTCGCTTGTTGGTTATTAGGAGAATTTGTTTGTTTGAGTTTGTTATTTGCTATCAAGGAAGTCGTTTATATTCATTCTAGTAGATGTTTATGATAATAGTAGGAGTCGGACCATTTACGTTTTAACCTTGGCAAGTGGTTATGTTCTATTTTTGCTTGTTTTGAATAAAGTACCTTTGAATACAACTTCCTTTGGTGGTATTAATTTTTTAGTTGTCGGCAGGTTTTAATGTTTAGAGACTTGAGTCAAGCATGATTCTTTAATCTGGATGCTTAGTCAACTAGTTAGTTACTCTTTTTTTAACGACTTACTGTTACCATGATTGGAGCCGGATTCTTGATTGCACGAAGTCATAAATCCTAGTCTGTAATTGAGTTGCTTGGTAACCTTGTTGCTTCCTAGTTACTGTATTCTGAAATTGGAATGGCAAGTGGTTATGTTCTATTTTTGCTTTTTTTTTTTAATAAAGTACCTTTGGATACAACTTCTAATTCTTTTTTCTTTTGTTCTCTTTTTGGGCCTTGCTTTTGATTCAGAAGTTCTCTAGAACTTTTTTTTCTATTTTGTAGATTTCTTCATACTTGTTCTTTCCATTGTCTTCTTGCTTACTGCTCCAATTCTCCATCTCCGGTGAGAATCATGCCCCCTTGCTTAGCTGTTTTAAACTACTCCCTTTCTTTTCTCTTTTTTGGCCTGTTTTTTGTCCATAGATTATACGATTAGTTGGACTTGATTATCTCAATTTTATTTCACTTTCCCTAGGCTCCATGTTTGGAATTCCCCCTTTCTGTTTCAATGTTTGCTTGATATTGTCATTAGGGTTATCTTCTTTCCATCAGAGTTTTACTGATAGAGTTCCCATTTGAGAATTTCAATTTTGTGGTTCGATGATTCTAGATGTTTGATATTGTTTAATTTGATTATTTTACCTTCACATTTAGATTATTTTCGTTTTCATTATTGTGGGAAGATAGTAAAGATGAATAATTCATCTGCTGGGTCGTCCTCAAAGCAAAGAACTGGATCGTCTCAGCCCTCTGAAACCTCTTTTAAGCGCAAAAGAGGGGTTTTTCAGAAAGAATGTAACTGATTTCCCTTTTCTTCCGTTTTTTTTCTTATTCTTCTTCTTCTTCATCTCAAGTACATGTTGAAATACAATTATGTGATCCTTCCTCTTTTCAGTGCAGCACATGATGTATGGTTTTGGAGATGACCCTAATGTAAGTGAAATTATCTTATATTACTTTTGTTCTAATTTGTATAGAAAGGATTCTTATGTATGTTTCCATGGAAATTCAAACATGAAAATTTCTTTTTGATGCTTTTCTGGGTTTTTCTGATCTTCCTCTTCCATGGCTTTGTATGTTTTGTCGAGAGAGCTTTGAGAGTGAATATCGTTTAGTAGATGAAATTTTGATTGTTTAGCTTTTCTTTGAAGATATTTGCAATAATCAGTTGCTCATAAACTCATCATAGGATCAGACATCTCCATGATTTCTGATACGTTAAATTTTAATTTAAGCTGCCACCCCATCCCTTAAGTAAAATGTTGTCCGCCTGAAGAAGATTGAAAAGAAGTAATCAATATTCCTTGTATTTTCTAAAATTGAGCTCAAATTTCCATCCCGTGAATGACAGAATAGAATAATGGTTTTGAAATCCTGAAGGTCTGTATAATGGCTGGGTTTTACGAGTGTTAATGTTAAGTAAGAGCCATGTCAAGAATTTTATTGGCTGCCTCTCTCTTTACTCATATGTTCTCAGCAGCTCAGAAGTACAATGCAAGCGTGGAAAAATTCTAGTCTTTGTGTTCTTGTTCTCATTTATAAATAAAAAATATCTATTAATGAGTTTTTGTTTGCTGCACTGCAGCCCCTTCCAGAATCCGTAGCACTTATGGAGGACATAGTTGTGGAGTACATCACTGAACTGGTAAGAATTTCTGTGTAATTATCATAAGCATCCCTTGCTAAATCAATGTCGTATGGTTAGGATTATCTGAAATATATATTCTTTTTAGGTGTATAAAGCCCAGGAAATTGGATCAAAGAGAGGAAAGCTATCAGTGGAAGACTTTTTGTATTTAATGCGAAAGGTATATTACTGTATGACATAGTTTCTGTCTGTATGTTTCCTTATCAATGAATGAACTTAAGTTCTCTCGTTATTTGGCTATGAAACAACTACAAGGCATCCTTAATCTTTAGAAATTGACATATTAAATTTTTCTTACAGCATTTTGTAAGCATAAATTTCTTCTATATCAGCTTTTGTTATAATCTTCCTTCCAAATGTGATTTTGGGGATTTACTGATTGCATAAACAGATCAGCTCCATTATTTTGAACTAACATTAGGTTGCCTAAAGCGCCCTGCTACAATCATTTAACTAAAGATTTGATGTCAAAACTTCTAAACCTATATGATTTTCCACATTTTAGGACCCACGCAAACTGAACCGTTCAACTGAACTGTTGTCGATGAACGAAGAGCTGAAACAGGCAAGGAGAGCTTTTGAGATAGATGAAGATAAGCTGAAAAAGGCTTTTGAAGAGGAAGACAAGATGGATTAGTAATCATTGGAAGATATTTTGGAGGTCATATGTCATTGTTGCTGTACAGACAAAGTATGTCTCATTATGGTTCCTTGCGATATTAAAAGTCACGCGACGGGTCTTAGAACTCTCTGTCTTTGTCATCCTTTTTAGACAGGGCAAAGCAAAGCAATTAGCGTTAACAAGGTATATTTTGTTTTTTTCTGCTTAATGGCAATTAATGTACCTGCTTAATGGCAACTTATACGTATAAAGGGTGGGGGCTCCCTATTGTACACGCACCCCTTTTGGAATTAATGAAATGAACGCCTCTTTTAAACGTTTGTAGCCTTAGTATATTGCTTCATTCAATATGTTAAGAGTTTTCGTACTGGGGCCTATCTTGGAGCAAACAACTTATGTGGCTATCTAATTGAGATCAAATCTGATTGTTTCTTAGAATGTCTTTTCAAATAGTATAAGTTACTCTTGTGTACATGGTGTCCGTAAATTGTTAAAAGTATTTAGTAAGTTTTTGAACTTTTGAGTTTGTGTAAATAGGTTTGTTATAACTCTGAAATCTTTAAAAATCTGAAGATCGTATCATTTTAAATTTGGTGAAT

mRNA sequence

GCCGAACCAAACCCTCGCCCCTCTCACGATCGACGACGCCATACCTTCCCTCTCTCGGCTGCCGTTCAACCGACGACGACGTCACTTCAACATCTAAGGAGAAGCTACTGCTGACTCTTTCGTAGTCACTCCCGGCCGCCGTTGTTTATTTCAGACGGCTTTCTCTCGGCTTCATTTGAGCTCTCATCGTCGTCATTTCCGATTTCTTCATACTTGTTCTTTCCATTGTCTTCTTGCTTACTGCTCCAATTCTCCATCTCCGATTATTTTCGTTTTCATTATTGTGGGAAGATAGTAAAGATGAATAATTCATCTGCTGGGTCGTCCTCAAAGCAAAGAACTGGATCGTCTCAGCCCTCTGAAACCTCTTTTAAGCGCAAAAGAGGGGTTTTTCAGAAAGAATTGCAGCACATGATGTATGGTTTTGGAGATGACCCTAATCCCCTTCCAGAATCCGTAGCACTTATGGAGGACATAGTTGTGGAGTACATCACTGAACTGGTGTATAAAGCCCAGGAAATTGGATCAAAGAGAGGAAAGCTATCAGTGGAAGACTTTTTGTATTTAATGCGAAAGGACCCACGCAAACTGAACCGTTCAACTGAACTGTTGTCGATGAACGAAGAGCTGAAACAGGCAAGGAGAGCTTTTGAGATAGATGAAGATAAGCTGAAAAAGGCTTTTGAAGAGGAAGACAAGATGGATTAGTAATCATTGGAAGATATTTTGGAGGTCATATGTCATTGTTGCTGTACAGACAAAGTATGTCTCATTATGGTTCCTTGCGATATTAAAAGTCACGCGACGGGTCTTAGAACTCTCTGTCTTTGTCATCCTTTTTAGACAGGGCAAAGCAAAGCAATTAGCGTTAACAAGGTATATTTTGTTTTTTTCTGCTTAATGGCAATTAATGTACCTGCTTAATGGCAACTTATACGTATAAAGGGTGGGGGCTCCCTATTGTACACGCACCCCTTTTGGAATTAATGAAATGAACGCCTCTTTTAAACGTTTGTAGCCTTAGTATATTGCTTCATTCAATATGTTAAGAGTTTTCGTACTGGGGCCTATCTTGGAGCAAACAACTTATGTGGCTATCTAATTGAGATCAAATCTGATTGTTTCTTAGAATGTCTTTTCAAATAGTATAAGTTACTCTTGTGTACATGGTGTCCGTAAATTGTTAAAAGTATTTAGTAAGTTTTTGAACTTTTGAGTTTGTGTAAATAGGTTTGTTATAACTCTGAAATCTTTAAAAATCTGAAGATCGTATCATTTTAAATTTGGTGAAT

Coding sequence (CDS)

ATGAATAATTCATCTGCTGGGTCGTCCTCAAAGCAAAGAACTGGATCGTCTCAGCCCTCTGAAACCTCTTTTAAGCGCAAAAGAGGGGTTTTTCAGAAAGAATTGCAGCACATGATGTATGGTTTTGGAGATGACCCTAATCCCCTTCCAGAATCCGTAGCACTTATGGAGGACATAGTTGTGGAGTACATCACTGAACTGGTGTATAAAGCCCAGGAAATTGGATCAAAGAGAGGAAAGCTATCAGTGGAAGACTTTTTGTATTTAATGCGAAAGGACCCACGCAAACTGAACCGTTCAACTGAACTGTTGTCGATGAACGAAGAGCTGAAACAGGCAAGGAGAGCTTTTGAGATAGATGAAGATAAGCTGAAAAAGGCTTTTGAAGAGGAAGACAAGATGGATTAG

Protein sequence

MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD
Homology
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BLAST of MELO3C015937.jh1 vs. NCBI nr
Match: TYK18217.1 (transcription initiation factor TFIID subunit 13 [Cucumis melo var. makuwa])

HSP 1 Score: 278 bits (710), Expect = 7.49e-93
Identity = 157/188 (83.51%), Postives = 158/188 (84.04%), Query Frame = 0 

Query: 9   LFISDGFLSASFELSSSSFPISSYLFFPLSSCLLLQFSISDYFRFHYCGKIVKMNNSSAG 68
           +FISDGFLSASFELSSSSFPI                              VKMNNSSAG
Sbjct: 1   MFISDGFLSASFELSSSSFPI------------------------------VKMNNSSAG 60

Query: 69  SSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITEL 128
           SSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITEL
Sbjct: 61  SSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITEL 120

Query: 129 VYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKA 188
           VYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKA
Sbjct: 121 VYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKA 158

Query: 189 FEEEDKMD 196
           FEEEDKMD
Sbjct: 181 FEEEDKMD 158

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BLAST of MELO3C015937.jh1 vs. NCBI nr
Match: XP_008451497.1 (PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_008451498.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_008451499.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_008451500.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_008451501.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_008451502.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_008451503.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_016901114.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_016901115.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_016901116.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >KAA0046681.1 transcription initiation factor TFIID subunit 13 [Cucumis melo var. makuwa])

HSP 1 Score: 253 bits (647), Expect = 1.36e-83
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0 

Query: 62  MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 121
           MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 1   MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 122 VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 181
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 182 EDKLKKAFEEEDKMD 196
           EDKLKKAFEEEDKMD
Sbjct: 121 EDKLKKAFEEEDKMD 135

[Close]
BLAST of MELO3C015937.jh1 vs. NCBI nr
Match: XP_004136002.1 (transcription initiation factor TFIID subunit 13 [Cucumis sativus] >KGN45001.1 hypothetical protein Csa_016903 [Cucumis sativus])

HSP 1 Score: 251 bits (642), Expect = 7.84e-83
Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = 0 

Query: 62  MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 121
           MNNSSAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 1   MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 122 VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 181
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 182 EDKLKKAFEEEDKMD 196
           EDKLKKAFEEEDKMD
Sbjct: 121 EDKLKKAFEEEDKMD 135

[Close]
BLAST of MELO3C015937.jh1 vs. NCBI nr
Match: XP_038899215.1 (transcription initiation factor TFIID subunit 13-like [Benincasa hispida] >XP_038899216.1 transcription initiation factor TFIID subunit 13-like [Benincasa hispida] >XP_038899217.1 transcription initiation factor TFIID subunit 13-like [Benincasa hispida])

HSP 1 Score: 250 bits (638), Expect = 3.30e-82
Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = 0 

Query: 62  MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 121
           MNN SAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 1   MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 122 VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 181
           VEYITELVYKAQEIGSKRGKLSVEDFLYL+RKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLIRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 182 EDKLKKAFEEEDKMD 196
           EDKLKKAFEEEDKMD
Sbjct: 121 EDKLKKAFEEEDKMD 135

[Close]
BLAST of MELO3C015937.jh1 vs. NCBI nr
Match: XP_022144527.1 (transcription initiation factor TFIID subunit 13 [Momordica charantia] >XP_022144536.1 transcription initiation factor TFIID subunit 13 [Momordica charantia])

HSP 1 Score: 248 bits (634), Expect = 1.34e-81
Identity = 132/135 (97.78%), Postives = 133/135 (98.52%), Query Frame = 0 

Query: 62  MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 121
           MNN SAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 1   MNNPSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 122 VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 181
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 182 EDKLKKAFEEEDKMD 196
           EDKLKKAFEEEDK+D
Sbjct: 121 EDKLKKAFEEEDKLD 135

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BLAST of MELO3C015937.jh1 vs. ExPASy Swiss-Prot
Match: Q6NQH4 (Transcription initiation factor TFIID subunit 13 OS=Arabidopsis thaliana OX=3702 GN=TAF13 PE=1 SV=1)

HSP 1 Score: 155.2 bits (391), Expect = 7.5e-37
Identity = 82/122 (67.21%), Postives = 103/122 (84.43%), Query Frame = 0 

Query: 65  SSAGSSSKQR-TGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVE 124
           ++A SSSK +  G+SQP E    +++ +FQKELQHMMYGFGD+ NPLPESVAL+EDIVVE
Sbjct: 7   AAASSSSKSKAAGTSQPQE----KRKTLFQKELQHMMYGFGDEQNPLPESVALVEDIVVE 66

Query: 125 YITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEIDED 184
           Y+T+L +KAQEIGSKRG+L V+DFLYL+RKD  KLNR  ELL+M EELKQAR+AF++DE 
Sbjct: 67  YVTDLTHKAQEIGSKRGRLLVDDFLYLIRKDLPKLNRCRELLAMQEELKQARKAFDVDEK 124

Query: 185 KL 186
           +L
Sbjct: 127 EL 124

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BLAST of MELO3C015937.jh1 vs. ExPASy Swiss-Prot
Match: Q148M7 (Transcription initiation factor TFIID subunit 13 OS=Bos taurus OX=9913 GN=TAF13 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 5.6e-24
Identity = 56/94 (59.57%), Postives = 77/94 (81.91%), Query Frame = 0 

Query: 86  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVE 145
           KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VE
Sbjct: 27  KRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVE 86

Query: 146 DFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE 180
           D ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Sbjct: 87  DIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118

[Close]
BLAST of MELO3C015937.jh1 vs. ExPASy Swiss-Prot
Match: Q15543 (Transcription initiation factor TFIID subunit 13 OS=Homo sapiens OX=9606 GN=TAF13 PE=1 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 5.6e-24
Identity = 56/94 (59.57%), Postives = 77/94 (81.91%), Query Frame = 0 

Query: 86  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVE 145
           KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VE
Sbjct: 27  KRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVE 86

Query: 146 DFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE 180
           D ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Sbjct: 87  DIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118

[Close]
BLAST of MELO3C015937.jh1 vs. ExPASy Swiss-Prot
Match: P61216 (Transcription initiation factor TFIID subunit 13 OS=Mus musculus OX=10090 GN=Taf13 PE=1 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 5.6e-24
Identity = 56/94 (59.57%), Postives = 77/94 (81.91%), Query Frame = 0 

Query: 86  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVE 145
           KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VE
Sbjct: 27  KRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVE 86

Query: 146 DFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE 180
           D ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Sbjct: 87  DIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118

[Close]
BLAST of MELO3C015937.jh1 vs. ExPASy Swiss-Prot
Match: Q5R9W6 (Transcription initiation factor TFIID subunit 13 OS=Pongo abelii OX=9601 GN=TAF13 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 5.6e-24
Identity = 56/94 (59.57%), Postives = 77/94 (81.91%), Query Frame = 0 

Query: 86  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVE 145
           KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VE
Sbjct: 27  KRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVE 86

Query: 146 DFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE 180
           D ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Sbjct: 87  DIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118

[Close]
BLAST of MELO3C015937.jh1 vs. ExPASy TrEMBL
Match: A0A5D3D2Q2 (Transcription initiation factor TFIID subunit 13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001560 PE=4 SV=1)

HSP 1 Score: 278 bits (710), Expect = 3.63e-93
Identity = 157/188 (83.51%), Postives = 158/188 (84.04%), Query Frame = 0 

Query: 9   LFISDGFLSASFELSSSSFPISSYLFFPLSSCLLLQFSISDYFRFHYCGKIVKMNNSSAG 68
           +FISDGFLSASFELSSSSFPI                              VKMNNSSAG
Sbjct: 1   MFISDGFLSASFELSSSSFPI------------------------------VKMNNSSAG 60

Query: 69  SSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITEL 128
           SSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITEL
Sbjct: 61  SSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITEL 120

Query: 129 VYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKA 188
           VYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKA
Sbjct: 121 VYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKA 158

Query: 189 FEEEDKMD 196
           FEEEDKMD
Sbjct: 181 FEEEDKMD 158

[Close]
BLAST of MELO3C015937.jh1 vs. ExPASy TrEMBL
Match: A0A1S3BRL0 (transcription initiation factor TFIID subunit 13 OS=Cucumis melo OX=3656 GN=LOC103492769 PE=4 SV=1)

HSP 1 Score: 253 bits (647), Expect = 6.57e-84
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0 

Query: 62  MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 121
           MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 1   MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 122 VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 181
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 182 EDKLKKAFEEEDKMD 196
           EDKLKKAFEEEDKMD
Sbjct: 121 EDKLKKAFEEEDKMD 135

[Close]
BLAST of MELO3C015937.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TZC2 (Transcription initiation factor TFIID subunit 13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold427G00490 PE=4 SV=1)

HSP 1 Score: 253 bits (647), Expect = 6.57e-84
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0 

Query: 62  MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 121
           MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 1   MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 122 VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 181
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 182 EDKLKKAFEEEDKMD 196
           EDKLKKAFEEEDKMD
Sbjct: 121 EDKLKKAFEEEDKMD 135

[Close]
BLAST of MELO3C015937.jh1 vs. ExPASy TrEMBL
Match: A0A0A0KB69 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G407540 PE=4 SV=1)

HSP 1 Score: 251 bits (642), Expect = 3.79e-83
Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = 0 

Query: 62  MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 121
           MNNSSAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 1   MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 122 VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 181
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 182 EDKLKKAFEEEDKMD 196
           EDKLKKAFEEEDKMD
Sbjct: 121 EDKLKKAFEEEDKMD 135

[Close]
BLAST of MELO3C015937.jh1 vs. ExPASy TrEMBL
Match: A0A6J1CTQ0 (transcription initiation factor TFIID subunit 13 OS=Momordica charantia OX=3673 GN=LOC111014188 PE=4 SV=1)

HSP 1 Score: 248 bits (634), Expect = 6.49e-82
Identity = 132/135 (97.78%), Postives = 133/135 (98.52%), Query Frame = 0 

Query: 62  MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 121
           MNN SAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 1   MNNPSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 122 VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 181
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 182 EDKLKKAFEEEDKMD 196
           EDKLKKAFEEEDK+D
Sbjct: 121 EDKLKKAFEEEDKLD 135

[Close]
BLAST of MELO3C015937.jh1 vs. TAIR 10
Match: AT1G02680.1 (TBP-associated factor 13 )

HSP 1 Score: 155.2 bits (391), Expect = 5.3e-38
Identity = 82/122 (67.21%), Postives = 103/122 (84.43%), Query Frame = 0 

Query: 65  SSAGSSSKQR-TGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVE 124
           ++A SSSK +  G+SQP E    +++ +FQKELQHMMYGFGD+ NPLPESVAL+EDIVVE
Sbjct: 7   AAASSSSKSKAAGTSQPQE----KRKTLFQKELQHMMYGFGDEQNPLPESVALVEDIVVE 66

Query: 125 YITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEIDED 184
           Y+T+L +KAQEIGSKRG+L V+DFLYL+RKD  KLNR  ELL+M EELKQAR+AF++DE 
Sbjct: 67  YVTDLTHKAQEIGSKRGRLLVDDFLYLIRKDLPKLNRCRELLAMQEELKQARKAFDVDEK 124

Query: 185 KL 186
           +L
Sbjct: 127 EL 124

The following BLAST results are available for this feature:
BLAST of MELO3C015937.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
TYK18217.17.49e-9383.51transcription initiation factor TFIID subunit 13 [Cucumis melo var. makuwa][more]
XP_008451497.11.36e-83100.00PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_0... [more]
XP_004136002.17.84e-8399.26transcription initiation factor TFIID subunit 13 [Cucumis sativus] >KGN45001.1 h... [more]
XP_038899215.13.30e-8298.52transcription initiation factor TFIID subunit 13-like [Benincasa hispida] >XP_03... [more]
XP_022144527.11.34e-8197.78transcription initiation factor TFIID subunit 13 [Momordica charantia] >XP_02214... [more]
BLAST of MELO3C015937.jh1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q6NQH47.5e-3767.21Transcription initiation factor TFIID subunit 13 OS=Arabidopsis thaliana OX=3702... [more]
Q148M75.6e-2459.57Transcription initiation factor TFIID subunit 13 OS=Bos taurus OX=9913 GN=TAF13 ... [more]
Q155435.6e-2459.57Transcription initiation factor TFIID subunit 13 OS=Homo sapiens OX=9606 GN=TAF1... [more]
P612165.6e-2459.57Transcription initiation factor TFIID subunit 13 OS=Mus musculus OX=10090 GN=Taf... [more]
Q5R9W65.6e-2459.57Transcription initiation factor TFIID subunit 13 OS=Pongo abelii OX=9601 GN=TAF1... [more]
BLAST of MELO3C015937.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3D2Q23.63e-9383.51Transcription initiation factor TFIID subunit 13 OS=Cucumis melo var. makuwa OX=... [more]
A0A1S3BRL06.57e-84100.00transcription initiation factor TFIID subunit 13 OS=Cucumis melo OX=3656 GN=LOC1... [more]
A0A5A7TZC26.57e-84100.00Transcription initiation factor TFIID subunit 13 OS=Cucumis melo var. makuwa OX=... [more]
A0A0A0KB693.79e-8399.26Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G407540 PE=4 SV=1[more]
A0A6J1CTQ06.49e-8297.78transcription initiation factor TFIID subunit 13 OS=Momordica charantia OX=3673 ... [more]
BLAST of MELO3C015937.jh1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G02680.15.3e-3867.21TBP-associated factor 13 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 103..130
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..25
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28
IPR009072Histone-foldGENE3D1.10.20.10Histone, subunit Acoord: 30..74
e-value: 3.2E-22
score: 79.9
IPR009072Histone-foldSUPERFAMILY47113Histone-foldcoord: 31..73
IPR003195Transcription initiation factor IID, subunit 13PFAMPF02269TFIID-18kDacoord: 30..118
e-value: 3.1E-31
score: 107.2
IPR003195Transcription initiation factor IID, subunit 13PANTHERPTHR11380TRANSCRIPTION INITIATION FACTOR TFIID/SUPT3-RELATEDcoord: 1..132
IPR003195Transcription initiation factor IID, subunit 13CDDcd07978TAF13coord: 28..118
e-value: 9.34158E-42
score: 131.884

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C015937.jh1.t2MELO3C015937.jh1.t2mRNA
MELO3C015937.jh1.t1MELO3C015937.jh1.t1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0006366 transcription by RNA polymerase II
molecular_function GO:0046982 protein heterodimerization activity