MELO3C015937 (gene) Melon (DHL92) v4

Overview


Name	MELO3C015937
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Transcription initiation factor TFIID subunit 13
Location	chr01: 30884960 .. 30890048 (+)
RNA-Seq Expression	MELO3C015937
Synteny	MELO3C015937

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GCCGAACCAAACCCTCGCCCCTCTCACGATCGACGACGCCATACCTTCCCTCTCTCGGCTGCCGTTCAACCGACGACGACGTCACTTCAACATCTAAGGAGAGGCTACTGCTGACTCTTTCGTAGTCACTCCCGGCCGCCGGTAAGTAACTTTTCTCTATTTCTCTATTTCTCTATTTTTCGGCTTCATCTCTCAGACTTGTTCAGTTGTTTGTGTACAGTTGTTTATTTCAGACGGCTTTCTCTCGGCTTCATTTGAGCTCTCATCGTCGTCATTTCCGGTAAGTAACATAAAGAACAAAGAATTAATTAGTTGAAGTTTATTCTTTGACAGTATATTGAATTTACTGTCTACAATGTTTGTGTATTGGCCTCCCAAGCGTTTGGAGCTATTTTTTCTGTTTGAAATATATCTCATTTACTTTGTTCTGTTTTGCCATCGATTAGTCATAGAAATTTATGTGATAATATGCATTTATATGAAGAGGAAAACGTTGTCCTAATTTTGCCAGGTATATTATTAAAACTAAGGCTACTCTTCTGAAACTTGGTGCGTTTCAATCGTATATTGCTTTTAGGAATATCTATTACCCTTGTTTCTAGAGTATTAGATGATGTTGGTTTCAGCGGTTGTCTAGCGTCATGGCTACCCATTAAGATTAGTTCAACAAACTACCAATGGCTACCTGCATCGCCACAATAATATTCAAATCGAAGTTACTCAGTTTAGTGATGTCTAGATTCAGTAATAAAATCGTATTCCTCTGCACTAAAATTCTGCCTTGATAAAAACTAGAAACATCATCATTGAGTGAAAGACATGGACGAAAACAGAGCAGTTTGGAGCTTCTACATTAAGGAAAGTCAAAAGACCAACATAACAAATGATCATCATCTTTTATCTTTTTACACATTCTTCTATTCTCTCTCTTGCATGCATATATATAACATCCCTTCTTCATTTTCAACCTCGATCTTCTGTCTCGCATCTTATTCCTAAATGGATCTATTATATGGATGACCCAAAATTTAGGGAGAAAATGAAATGTGTTGTGACCCACTCTTTTTGGAATTTAGATTTTCTTTTTTCTTTTTACTTACACTGTCCGCATAAAATTATCACTTTCTTGATCTCCTCTCTCAAACTCACTCTCGGTTTTTTCTCTTTCTCACTCTTTGTAATATGTGAGGGTGCTCACATTGAGTATAATAAAGTTAATTAAAAGAGTAACTTGGCTGAGTATAATCATCCTACTATTTTCATGGAATAAGTTTTCTATTCTTATAGGTACTAAAAAGACGTATTAATTTTATATGTGTTTAACTTGTGATAAAAACTAATCATATATAACCTAAGAAAGCAAATAAATGACAACAAACAAGGCAACACTAGAGATAATAGAAACTCATCATAGGGGTAATGACTTTGTTAATCGATATGGATTCCTACATCCCACATCTCGCCAAACCATAAAAACCCCATTTTTCTTTGAAGGGCGGATGGAGAAGGAACTCCTAACACATTTAAATTGTTTATATAGTCATGGTTGTTCCGATTTATATATAGGCTTTTTGTCTATAGAAAAGTCCCCCCATGAAATAGGAGATTTATATATAATATTACTAAGTTGGGTACCTGATATGAATTGTTTATATACTCATGGTTGTTCTGATTATGATGTTTCCATTCCTCTCACTGCTGTTGTTAGAAGAATCTTCAGCTTTTTTCACTTGAGTTGTTGTCGTTGAAGCCAATTTCTTTAATCTAGATATTGCAAAAAGCCATGTTGCCTGATATGGAATCTTGATTCTCTTATTTGCACCCTCATCCATCTTCATTCTACCATTCACAAACATTATGCAATCCATCAGGCACTCTTTTGCCAATCCTTTAACGACTTTCTGTTACCCTCTTCTTCTCCTTACTTCTGATCTTCGCTTGTTGGTTATTAGGAGAATTTGTTTGTTTGAGTTTGTTATTTGCTATCAAGGAAGTCGTTTATATTCATTCTAGTAGATGTTTATGATAATAGTAGGAGTCGGACCATTTACGTTTTAACCTTGGCAAGTGGTTATGTTCTATTTTTGCTTGTTTTGAATAAAGTACCTTTGAATACAACTTCCTTTGGTGGTATTAATTTTTTAGTTGTCGGCAGGTTTTAATGTTTAGAGACTTGAGTCAAGCATGATTCTTTAATCTGGATGCTTAGTCAACTAGTTAGTTACTCTTTTTTTAACGACTTACTGTTACCATGATTGGAGCCGGATTCTTGATTGCACGAAGTCATAAATCCTAGTCTGTAATTGAGTTGCTTGGTAACCTTGTTGCTTCCTAGTTACTGTATTCTGAAATTGGAATGGCAAGTGGTTATGTTCTATTTTTGCTTTTTTTTTTTAATAAAGTACCTTTGGATACAACTTCTAATTCTTTTTTCTTTTGTTCTCTTTTTGGGCCTTGCTTTTGATTCAGAAGTTCTCTAGAACTTTTTTTTCTATTTTGTAGATTTCTTCATACTTGTTCTTTCCATTGTCTTCTTGCTTACTGCTCCAATTCTCCATCTCCGGTGAGAATCATGCCCCCTTGCTTAGCTGTTTTAAACTACTCCCTTTCTTTTCTCTTTTTTGGCCTGTTTTTTGTCCATAGATTATACGATTAGTTGGACTTGATTATCTCAATTTTATTTCACTTTCCCTAGGCTCCATGTTTGGAATTCCCCCTTTCTGTTTCAATGTTTGCTTGATATTGTCATTAGGGTTATCTTCTTTCCATCAGAGTTTTACTGATAGAGTTCCCATTTGAGAATTTCAATTTTGTGGTTCGATGATTCTAGATGTTTGATATTGTTTAATTTGATTATTTTACCTTCACATTTAGATTATTTTCGTTTTCATTATTGTGGGAAGATAGTAAAGATGAATAATTCATCTGCTGGGTCGTCCTCAAAGCAAAGAACTGGATCGTCTCAGCCCTCTGAAACCTCTTTTAAGCGCAAAAGAGGGGTTTTTCAGAAAGAATGTAACTGATTTCCCTTTTCTTCCGTTTTTTTTCTTATTCTTCTTCTTCTTCATCTCAAGTACATGTTGAAATACAATTATGTGATCCTTCCTCTTTTCAGTGCAGCACATGATGTATGGTTTTGGAGATGACCCTAATGTAAGTGAAATTATCTTATATTACTTTTGTTCTAATTTGTATAGAAAGGATTCTTATGTATGTTTCCATGGAAATTCAAACATGAAAATTTCTTTTTGATGCTTTTCTGGGTTTTTCTGATCTTCCTCTTCCATGGCTTTGTATGTTTTGTCGAGAGAGCTTTGAGAGTGAATATCGTTTAGTAGATGAAATTTTGATTGTTTAGCTTTTCTTTGAAGATATTTGCAATAATCAGTTGCTCATAAACTCATCATAGGATCAGACATCTCCATGATTTCTGATACGTTAAATTTTAATTTAAGCTGCCACCCCATCCCTTAAGTAAAATGTTGTCCGCCTGAAGAAGATTGAAAAGAAGTAATCAATATTCCTTGTATTTTCTAAAATTGAGCTCAAATTTCCATCCCGTGAATGACAGAATAGAATAATGGTTTTGAAATCCTGAAGGTCTGTATAATGGCTGGGTTTTACGAGTGTTAATGTTAAGTAAGAGCCATGTCAAGAATTTTATTGGCTGCCTCTCTCTTTACTCATATGTTCTCAGCAGCTCAGAAGTACAATGCAAGCGTGGAAAAATTCTAGTCTTTGTGTTCTTGTTCTCATTTATAAATAAAAAATATCTATTAATGAGTTTTTGTTTGCTGCACTGCAGCCCCTTCCAGAATCCGTAGCACTTATGGAGGACATAGTTGTGGAGTACATCACTGAACTGGTAAGAATTTCTGTGTAATTATCATAAGCATCCCTTGCTAAATCAATGTCGTATGGTTAGGATTATCTGAAATATATATTCTTTTTAGGTGTATAAAGCCCAGGAAATTGGATCAAAGAGAGGAAAGCTATCAGTGGAAGACTTTTTGTATTTAATGCGAAAGGTATATTACTGTATGACATAGTTTCTGTCTGTATGTTTCCTTATCAATGAATGAACTTAAGTTCTCTCGTTATTTGGCTATGAAACAACTACAAGGCATCCTTAATCTTTAGAAATTGACATATTAAATTTTTCTTACAGCATTTTGTAAGCATAAATTTCTTCTATATCAGCTTTTGTTATAATCTTCCTTCCAAATGTGATTTTGGGGATTTACTGATTGCATAAACAGATCAGCTCCATTATTTTGAACTAACATTAGGTTGCCTAAAGCGCCCTGCTACAATCATTTAACTAAAGATTTGATGTCAAAACTTCTAAACCTATATGATTTTCCACATTTTAGGACCCACGCAAACTGAACCGTTCAACTGAACTGTTGTCGATGAACGAAGAGCTGAAACAGGCAAGGAGAGCTTTTGAGATAGATGAAGATAAGCTGAAAAAGGCTTTTGAAGAGGAAGACAAGATGGATTAGTAATCATTGGAAGATATTTTGGAGGTCATATGTCATTGTTGCTGTACAGACAAAGTATGTCTCATTATGGTTCCTTGCGATATTAAAAGTCACGCGACGGGTCTTAGAACTCTCTGTCTTTGTCATCCTTTTTAGACAGGGCAAAGCAAAGCAATTAGCGTTAACAAGGTATATTTTGTTTTTTTCTGCTTAATGGCAATTAATGTACCTGCTTAATGGCAACTTATACGTATAAAGGGTGGGGGCTCCCTATTGTACACGCACCCCTTTTGGAATTAATGAAATGAACGCCTCTTTTAAACGTTTGTAGCCTTAGTATATTGCTTCATTCAATATGTTAAGAGTTTTCGTACTGGGGCCTATCTTGGAGCAAACAACTTATGTGGCTATCTAATTGAGATCAAATCTGATTGTTTCTTAGAATGTCTTTTCAAATAGTATAAGTTACTCTTGTGTACATGGTGTCCGTAAATTGTTAAAAGTATTTAGTAAGTTTTTGAACTTTTGAGTTTGTGTAAATAGGTTTGTTATAACTCTGAAATCTTTAAAAATCTGAAGATCGTATCATTTTAAATTTGGTGAAT

mRNA sequence

GCCGAACCAAACCCTCGCCCCTCTCACGATCGACGACGCCATACCTTCCCTCTCTCGGCTGCCGTTCAACCGACGACGACGTCACTTCAACATCTAAGGAGAGGCTACTGCTGACTCTTTCGTAGTCACTCCCGGCCGCCGTTGTTTATTTCAGACGGCTTTCTCTCGGCTTCATTTGAGCTCTCATCGTCGTCATTTCCGATTTCTTCATACTTGTTCTTTCCATTGTCTTCTTGCTTACTGCTCCAATTCTCCATCTCCGATTATTTTCGTTTTCATTATTGTGGGAAGATAGTAAAGATGAATAATTCATCTGCTGGGTCGTCCTCAAAGCAAAGAACTGGATCGTCTCAGCCCTCTGAAACCTCTTTTAAGCGCAAAAGAGGGGTTTTTCAGAAAGAATTGCAGCACATGATGTATGGTTTTGGAGATGACCCTAATCCCCTTCCAGAATCCGTAGCACTTATGGAGGACATAGTTGTGGAGTACATCACTGAACTGGTGTATAAAGCCCAGGAAATTGGATCAAAGAGAGGAAAGCTATCAGTGGAAGACTTTTTGTATTTAATGCGAAAGGACCCACGCAAACTGAACCGTTCAACTGAACTGTTGTCGATGAACGAAGAGCTGAAACAGGCAAGGAGAGCTTTTGAGATAGATGAAGATAAGCTGAAAAAGGCTTTTGAAGAGGAAGACAAGATGGATTAGTAATCATTGGAAGATATTTTGGAGGTCATATGTCATTGTTGCTGTACAGACAAAGTATGTCTCATTATGGTTCCTTGCGATATTAAAAGTCACGCGACGGGTCTTAGAACTCTCTGTCTTTGTCATCCTTTTTAGACAGGGCAAAGCAAAGCAATTAGCGTTAACAAGGTATATTTTGTTTTTTTCTGCTTAATGGCAATTAATGTACCTGCTTAATGGCAACTTATACGTATAAAGGGTGGGGGCTCCCTATTGTACACGCACCCCTTTTGGAATTAATGAAATGAACGCCTCTTTTAAACGTTTGTAGCCTTAGTATATTGCTTCATTCAATATGTTAAGAGTTTTCGTACTGGGGCCTATCTTGGAGCAAACAACTTATGTGGCTATCTAATTGAGATCAAATCTGATTGTTTCTTAGAATGTCTTTTCAAATAGTATAAGTTACTCTTGTGTACATGGTGTCCGTAAATTGTTAAAAGTATTTAGTAAGTTTTTGAACTTTTGAGTTTGTGTAAATAGGTTTGTTATAACTCTGAAATCTTTAAAAATCTGAAGATCGTATCATTTTAAATTTGGTGAAT

Coding sequence (CDS)

ATGAATAATTCATCTGCTGGGTCGTCCTCAAAGCAAAGAACTGGATCGTCTCAGCCCTCTGAAACCTCTTTTAAGCGCAAAAGAGGGGTTTTTCAGAAAGAATTGCAGCACATGATGTATGGTTTTGGAGATGACCCTAATCCCCTTCCAGAATCCGTAGCACTTATGGAGGACATAGTTGTGGAGTACATCACTGAACTGGTGTATAAAGCCCAGGAAATTGGATCAAAGAGAGGAAAGCTATCAGTGGAAGACTTTTTGTATTTAATGCGAAAGGACCCACGCAAACTGAACCGTTCAACTGAACTGTTGTCGATGAACGAAGAGCTGAAACAGGCAAGGAGAGCTTTTGAGATAGATGAAGATAAGCTGAAAAAGGCTTTTGAAGAGGAAGACAAGATGGATTAG

Protein sequence

MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEIDEDKLKKAFEEEDKMD

Homology

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BLAST of MELO3C015937 vs. NCBI nr
Match: XP_008451497.1 (PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_008451498.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_008451499.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_008451500.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_008451501.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_008451502.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_008451503.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_016901114.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_016901115.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_016901116.1 PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >KAA0046681.1 transcription initiation factor TFIID subunit 13 [Cucumis melo var. makuwa])

HSP 1 Score: 254.2 bits (648), Expect = 6.2e-64
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60
           MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 1   MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 121 EDKLKKAFEEEDKMD 136
           EDKLKKAFEEEDKMD
Sbjct: 121 EDKLKKAFEEEDKMD 135

[Close]

BLAST of MELO3C015937 vs. NCBI nr
Match: TYK18217.1 (transcription initiation factor TFIID subunit 13 [Cucumis melo var. makuwa])

HSP 1 Score: 254.2 bits (648), Expect = 6.2e-64
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60
           MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 24  MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 83

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 84  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 143

Query: 121 EDKLKKAFEEEDKMD 136
           EDKLKKAFEEEDKMD
Sbjct: 144 EDKLKKAFEEEDKMD 158

[Close]

BLAST of MELO3C015937 vs. NCBI nr
Match: XP_004136002.1 (transcription initiation factor TFIID subunit 13 [Cucumis sativus] >KGN45001.1 hypothetical protein Csa_016903 [Cucumis sativus])

HSP 1 Score: 252.3 bits (643), Expect = 2.4e-63
Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60
           MNNSSAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 1   MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 121 EDKLKKAFEEEDKMD 136
           EDKLKKAFEEEDKMD
Sbjct: 121 EDKLKKAFEEEDKMD 135

[Close]

BLAST of MELO3C015937 vs. NCBI nr
Match: XP_038899215.1 (transcription initiation factor TFIID subunit 13-like [Benincasa hispida] >XP_038899216.1 transcription initiation factor TFIID subunit 13-like [Benincasa hispida] >XP_038899217.1 transcription initiation factor TFIID subunit 13-like [Benincasa hispida])

HSP 1 Score: 250.8 bits (639), Expect = 6.9e-63
Identity = 133/135 (98.52%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60
           MNN SAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 1   MNNPSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEYITELVYKAQEIGSKRGKLSVEDFLYL+RKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLIRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 121 EDKLKKAFEEEDKMD 136
           EDKLKKAFEEEDKMD
Sbjct: 121 EDKLKKAFEEEDKMD 135

[Close]

BLAST of MELO3C015937 vs. NCBI nr
Match: XP_022144527.1 (transcription initiation factor TFIID subunit 13 [Momordica charantia] >XP_022144536.1 transcription initiation factor TFIID subunit 13 [Momordica charantia])

HSP 1 Score: 249.2 bits (635), Expect = 2.0e-62
Identity = 132/135 (97.78%), Postives = 133/135 (98.52%), Query Frame = 0


Query: 1   MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60
           MNN SAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 1   MNNPSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 121 EDKLKKAFEEEDKMD 136
           EDKLKKAFEEEDK+D
Sbjct: 121 EDKLKKAFEEEDKLD 135

[Close]

BLAST of MELO3C015937 vs. ExPASy Swiss-Prot
Match: Q6NQH4 (Transcription initiation factor TFIID subunit 13 OS=Arabidopsis thaliana OX=3702 GN=TAF13 PE=1 SV=1)

HSP 1 Score: 152.9 bits (385), Expect = 2.6e-36
Identity = 82/122 (67.21%), Postives = 103/122 (84.43%), Query Frame = 0


Query: 4   SSAGSSSKQR-TGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVE 63
           ++A SSSK +  G+SQP E    +++ +FQKELQHMMYGFGD+ NPLPESVAL+EDIVVE
Sbjct: 7   AAASSSSKSKAAGTSQPQE----KRKTLFQKELQHMMYGFGDEQNPLPESVALVEDIVVE 66

Query: 64  YITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEIDED 123
           Y+T+L +KAQEIGSKRG+L V+DFLYL+RKD  KLNR  ELL+M EELKQAR+AF++DE 
Sbjct: 67  YVTDLTHKAQEIGSKRGRLLVDDFLYLIRKDLPKLNRCRELLAMQEELKQARKAFDVDEK 124

Query: 124 KL 125
           +L
Sbjct: 127 EL 124

[Close]

BLAST of MELO3C015937 vs. ExPASy Swiss-Prot
Match: Q148M7 (Transcription initiation factor TFIID subunit 13 OS=Bos taurus OX=9913 GN=TAF13 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.8e-24
Identity = 56/94 (59.57%), Postives = 77/94 (81.91%), Query Frame = 0


Query: 25  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVE 84
           KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VE
Sbjct: 27  KRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVE 86

Query: 85  DFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE 119
           D ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Sbjct: 87  DIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118

[Close]

BLAST of MELO3C015937 vs. ExPASy Swiss-Prot
Match: Q15543 (Transcription initiation factor TFIID subunit 13 OS=Homo sapiens OX=9606 GN=TAF13 PE=1 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.8e-24
Identity = 56/94 (59.57%), Postives = 77/94 (81.91%), Query Frame = 0


Query: 25  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVE 84
           KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VE
Sbjct: 27  KRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVE 86

Query: 85  DFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE 119
           D ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Sbjct: 87  DIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118

[Close]

BLAST of MELO3C015937 vs. ExPASy Swiss-Prot
Match: P61216 (Transcription initiation factor TFIID subunit 13 OS=Mus musculus OX=10090 GN=Taf13 PE=1 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.8e-24
Identity = 56/94 (59.57%), Postives = 77/94 (81.91%), Query Frame = 0


Query: 25  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVE 84
           KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VE
Sbjct: 27  KRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVE 86

Query: 85  DFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE 119
           D ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Sbjct: 87  DIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118

[Close]

BLAST of MELO3C015937 vs. ExPASy Swiss-Prot
Match: Q5R9W6 (Transcription initiation factor TFIID subunit 13 OS=Pongo abelii OX=9601 GN=TAF13 PE=2 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 3.8e-24
Identity = 56/94 (59.57%), Postives = 77/94 (81.91%), Query Frame = 0


Query: 25  KRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVEYITELVYKAQEIGSKRGKLSVE 84
           KRKR +F KEL+ MMYGFGDD NP  ESV ++ED+V+E+ITE+ +KA  IG ++G++ VE
Sbjct: 27  KRKR-LFSKELRCMMYGFGDDQNPYTESVDILEDLVIEFITEMTHKAMSIG-RQGRVQVE 86

Query: 85  DFLYLMRKDPRKLNRSTELLSMNEELKQARRAFE 119
           D ++L+RKDPRK  R  +LL+MNEELK+AR+AF+
Sbjct: 87  DIVFLIRKDPRKFARVKDLLTMNEELKRARKAFD 118

[Close]

BLAST of MELO3C015937 vs. ExPASy TrEMBL
Match: A0A1S3BRL0 (transcription initiation factor TFIID subunit 13 OS=Cucumis melo OX=3656 GN=LOC103492769 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 3.0e-64
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60
           MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 1   MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 121 EDKLKKAFEEEDKMD 136
           EDKLKKAFEEEDKMD
Sbjct: 121 EDKLKKAFEEEDKMD 135

[Close]

BLAST of MELO3C015937 vs. ExPASy TrEMBL
Match: A0A5A7TZC2 (Transcription initiation factor TFIID subunit 13 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold427G00490 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 3.0e-64
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60
           MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 1   MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 121 EDKLKKAFEEEDKMD 136
           EDKLKKAFEEEDKMD
Sbjct: 121 EDKLKKAFEEEDKMD 135

[Close]

BLAST of MELO3C015937 vs. ExPASy TrEMBL
Match: A0A5D3D2Q2 (Transcription initiation factor TFIID subunit 13 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G001560 PE=4 SV=1)

HSP 1 Score: 254.2 bits (648), Expect = 3.0e-64
Identity = 135/135 (100.00%), Postives = 135/135 (100.00%), Query Frame = 0


Query: 1   MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60
           MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 24  MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 83

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 84  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 143

Query: 121 EDKLKKAFEEEDKMD 136
           EDKLKKAFEEEDKMD
Sbjct: 144 EDKLKKAFEEEDKMD 158

[Close]

BLAST of MELO3C015937 vs. ExPASy TrEMBL
Match: A0A0A0KB69 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G407540 PE=4 SV=1)

HSP 1 Score: 252.3 bits (643), Expect = 1.1e-63
Identity = 134/135 (99.26%), Postives = 134/135 (99.26%), Query Frame = 0


Query: 1   MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60
           MNNSSAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 1   MNNSSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 121 EDKLKKAFEEEDKMD 136
           EDKLKKAFEEEDKMD
Sbjct: 121 EDKLKKAFEEEDKMD 135

[Close]

BLAST of MELO3C015937 vs. ExPASy TrEMBL
Match: A0A6J1CTQ0 (transcription initiation factor TFIID subunit 13 OS=Momordica charantia OX=3673 GN=LOC111014188 PE=4 SV=1)

HSP 1 Score: 249.2 bits (635), Expect = 9.7e-63
Identity = 132/135 (97.78%), Postives = 133/135 (98.52%), Query Frame = 0


Query: 1   MNNSSAGSSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60
           MNN SAG SSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV
Sbjct: 1   MNNPSAGPSSKQRTGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIV 60

Query: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120
           VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID
Sbjct: 61  VEYITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEID 120

Query: 121 EDKLKKAFEEEDKMD 136
           EDKLKKAFEEEDK+D
Sbjct: 121 EDKLKKAFEEEDKLD 135

[Close]

BLAST of MELO3C015937 vs. TAIR 10
Match: AT1G02680.1 (TBP-associated factor 13 )

HSP 1 Score: 152.9 bits (385), Expect = 1.8e-37
Identity = 82/122 (67.21%), Postives = 103/122 (84.43%), Query Frame = 0


Query: 4   SSAGSSSKQR-TGSSQPSETSFKRKRGVFQKELQHMMYGFGDDPNPLPESVALMEDIVVE 63
           ++A SSSK +  G+SQP E    +++ +FQKELQHMMYGFGD+ NPLPESVAL+EDIVVE
Sbjct: 7   AAASSSSKSKAAGTSQPQE----KRKTLFQKELQHMMYGFGDEQNPLPESVALVEDIVVE 66

Query: 64  YITELVYKAQEIGSKRGKLSVEDFLYLMRKDPRKLNRSTELLSMNEELKQARRAFEIDED 123
           Y+T+L +KAQEIGSKRG+L V+DFLYL+RKD  KLNR  ELL+M EELKQAR+AF++DE 
Sbjct: 67  YVTDLTHKAQEIGSKRGRLLVDDFLYLIRKDLPKLNRCRELLAMQEELKQARKAFDVDEK 124

Query: 124 KL 125
           +L
Sbjct: 127 EL 124

The following BLAST results are available for this feature:

BLAST of MELO3C015937 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008451497.1	6.2e-64	100.00	PREDICTED: transcription initiation factor TFIID subunit 13 [Cucumis melo] >XP_0...	[more]
TYK18217.1	6.2e-64	100.00	transcription initiation factor TFIID subunit 13 [Cucumis melo var. makuwa]	[more]
XP_004136002.1	2.4e-63	99.26	transcription initiation factor TFIID subunit 13 [Cucumis sativus] >KGN45001.1 h...	[more]
XP_038899215.1	6.9e-63	98.52	transcription initiation factor TFIID subunit 13-like [Benincasa hispida] >XP_03...	[more]
XP_022144527.1	2.0e-62	97.78	transcription initiation factor TFIID subunit 13 [Momordica charantia] >XP_02214...	[more]

BLAST of MELO3C015937 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q6NQH4	2.6e-36	67.21	Transcription initiation factor TFIID subunit 13 OS=Arabidopsis thaliana OX=3702...	[more]
Q148M7	3.8e-24	59.57	Transcription initiation factor TFIID subunit 13 OS=Bos taurus OX=9913 GN=TAF13 ...	[more]
Q15543	3.8e-24	59.57	Transcription initiation factor TFIID subunit 13 OS=Homo sapiens OX=9606 GN=TAF1...	[more]
P61216	3.8e-24	59.57	Transcription initiation factor TFIID subunit 13 OS=Mus musculus OX=10090 GN=Taf...	[more]
Q5R9W6	3.8e-24	59.57	Transcription initiation factor TFIID subunit 13 OS=Pongo abelii OX=9601 GN=TAF1...	[more]

BLAST of MELO3C015937 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BRL0	3.0e-64	100.00	transcription initiation factor TFIID subunit 13 OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A5A7TZC2	3.0e-64	100.00	Transcription initiation factor TFIID subunit 13 OS=Cucumis melo var. makuwa OX=...	[more]
A0A5D3D2Q2	3.0e-64	100.00	Transcription initiation factor TFIID subunit 13 OS=Cucumis melo var. makuwa OX=...	[more]
A0A0A0KB69	1.1e-63	99.26	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G407540 PE=4 SV=1	[more]
A0A6J1CTQ0	9.7e-63	97.78	transcription initiation factor TFIID subunit 13 OS=Momordica charantia OX=3673 ...	[more]

BLAST of MELO3C015937 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G02680.1	1.8e-37	67.21	TBP-associated factor 13	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 103..130
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..28
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..25
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 30..74 e-value: 3.2E-22 score: 79.9
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 31..73
IPR003195	Transcription initiation factor IID, subunit 13	PFAM	PF02269	TFIID-18kDa	coord: 30..118 e-value: 3.1E-31 score: 107.2
IPR003195	Transcription initiation factor IID, subunit 13	PANTHER	PTHR11380	TRANSCRIPTION INITIATION FACTOR TFIID/SUPT3-RELATED	coord: 1..132
IPR003195	Transcription initiation factor IID, subunit 13	CDD	cd07978	TAF13	coord: 28..118 e-value: 9.34158E-42 score: 131.884

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C015937.1	MELO3C015937.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006366	transcription by RNA polymerase II
molecular_function	GO:0046982	protein heterodimerization activity