MELO3C015787 (gene) Melon (DHL92) v4

Overview


Name	MELO3C015787
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Pentatricopeptide repeat-containing protein
Location	chr01: 29037066 .. 29038054 (+)
RNA-Seq Expression	MELO3C015787
Synteny	MELO3C015787

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTCACATTTACTATGTTGATTGATACACTTTACAAGGAGGGAAAGCTTATCGAGGCTCAGAAGTTGCTTGAGGTCATGATTCAAAGAGGTATCTTTCCTGATTCGTGTACTTATAATTCACTGATGGAGGGATTCTGTATGGTTGATGATTTGAATAGTGCCAGAGAACTGTTCCTTAGTATGCCAAGCAAAAGATGTGAACCTAATGAGATTAGCTACAATATACGCTAATTAACGGGTATCGTAAAACTTGGAAGGTGGAAGAAGCAACGAACCTTTACAATGAAATGCTTCAAGTGGGAAAGAGACCAGATGTGAAAACATATGGTACCTTGTTAACAGAACTTTTTCAGACAGGCAAGGTTGGTGATGCAAAGAAGCTATTTGGTGTCATGAAAACTTATGGTATTTCTGCAGATTCTTGTATACATGGTATTTTCTTAGATGGGTTGTGTAAGAATGGTTGTTTATTTGAAGCGATGAAACTTTTTAACGAGCTAAAATCATACAACTTCAAATTGCACATTGGAAGCTATAATTGTCTAATTGATGGCCTATGTAAAGCAGGAAAAGTTGAAATTGCTTGGGAGCTTTTCAAAAAACTATCCCAGGAAGGGCTTGAACCAAATGTTGTCACTTGTAACATTATGATCAATGGGTTTTGTAAGGTGGGACAAGTAGATAAGGAAAATATTTTGTTTGAAAAGATGGAAGAAAATGGTTGTACTCCTAACATAATTACTTATAATACCCTTTTGCATGGTTTCTACCATAGCAACAAATCAGAGGAGGTGGTCAAACTTCTCTATAAGACGGTTCAAAGGGATGTGTCACTAGATACTATCAGTTACACCATAGTCGTTGACATGCTCTGCAAAGATGAAAAATATCGAGAATGTCTAGACTTGTTTCCAAGATTTTCGGTCCAAAAGCATCAGATTGATATTGAATGTTCTTTTGAAAGCCCACTGAATTTCCAAGCTTAG

mRNA sequence

ATGGTCACATTTACTATGTTGATTGATACACTTTACAAGGAGGGAAAGCTTATCGAGGCTCAGAAGTTGCTTGAGGTCATGATTCAAAGAGGTATCTTTCCTGATTCGTGTACTTATAATTCACTGATGGAGGGATTCTGTATGGTTGATGATTTGAATAGTGCCAGAGAACTGTTCCTTAATACTATCAGTTACACCATAGTCGTTGACATGCTCTGCAAAGATGAAAAATATCGAGAATGTCTAGACTTGTTTCCAAGATTTTCGGTCCAAAAGCATCAGATTGATATTGAATGTTCTTTTGAAAGCCCACTGAATTTCCAAGCTTAG

Coding sequence (CDS)

ATGGTCACATTTACTATGTTGATTGATACACTTTACAAGGAGGGAAAGCTTATCGAGGCTCAGAAGTTGCTTGAGGTCATGATTCAAAGAGGTATCTTTCCTGATTCGTGTACTTATAATTCACTGATGGAGGGATTCTGTATGGTTGATGATTTGAATAGTGCCAGAGAACTGTTCCTTAATACTATCAGTTACACCATAGTCGTTGACATGCTCTGCAAAGATGAAAAATATCGAGAATGTCTAGACTTGTTTCCAAGATTTTCGGTCCAAAAGCATCAGATTGATATTGAATGTTCTTTTGAAAGCCCACTGAATTTCCAAGCTTAG

Protein sequence

MVTFTMLIDTLYKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSARELFLNTISYTIVVDMLCKDEKYRECLDLFPRFSVQKHQIDIECSFESPLNFQA

Homology

[Close]

BLAST of MELO3C015787 vs. NCBI nr
Match: TYK26160.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 165.2 bits (417), Expect = 3.1e-37
Identity = 104/220 (47.27%), Postives = 106/220 (48.18%), Query Frame = 0


Query: 1   MVTFTMLIDTLYKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSARELF- 60
           MVTFTMLIDTL KEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSAR+LF 
Sbjct: 1   MVTFTMLIDTLCKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSARDLFL 60

Query: 61  ------------------------------------------------------------ 110
                                                                       
Sbjct: 61  KLFQTGKVDDAKKLFGVMKTYGKVEIAWELLKKLSQEGLEPNVVTCNIMINGFCKVGQVD 120

[Close]

BLAST of MELO3C015787 vs. NCBI nr
Match: XP_016901045.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis melo])

HSP 1 Score: 143.3 bits (360), Expect = 1.3e-30
Identity = 101/264 (38.26%), Postives = 107/264 (40.53%), Query Frame = 0


Query: 1   MVTFTMLIDTLYKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDD--------- 60
           MVTFTMLIDTLYKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMV++         
Sbjct: 1   MVTFTMLIDTLYKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVEEATNLYNEML 60

Query: 61  -----------------------LNSARELF----------------------------- 110
                                  +  A++LF                             
Sbjct: 61  QVGKRPDVKTYGTLLTELFQTGKVGDAKKLFGVMKTYGISADSCIHGIFLDGLCKNGCLF 120

[Close]

BLAST of MELO3C015787 vs. NCBI nr
Match: XP_011659273.2 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial [Cucumis sativus] >KAE8646303.1 hypothetical protein Csa_016074 [Cucumis sativus])

HSP 1 Score: 107.1 bits (266), Expect = 9.9e-20
Identity = 56/94 (59.57%), Postives = 71/94 (75.53%), Query Frame = 0


Query: 1   MVTFTMLIDTLYKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSARELFL 60
           MVTF++LIDTL KEGK+ EA+KLLEVMIQRGI P+  TYNSL++GFCMV DLNSARELFL
Sbjct: 307 MVTFSVLIDTLCKEGKVTEAKKLLEVMIQRGIVPNLITYNSLIDGFCMVGDLNSARELFL 366

Query: 61  ---------NTISYTIVVDMLCKDEKYRECLDLF 86
                    + ISYT +++  CK  K +E ++L+
Sbjct: 367 SMPSKGLEPDEISYTTLINGYCKTWKVKEAMNLY 400

[Close]

BLAST of MELO3C015787 vs. NCBI nr
Match: XP_008451225.1 (PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis melo] >XP_016901074.1 PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like [Cucumis melo])

HSP 1 Score: 104.8 bits (260), Expect = 4.9e-19
Identity = 55/93 (59.14%), Postives = 68/93 (73.12%), Query Frame = 0


Query: 2   VTFTMLIDTLYKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSARELFL- 61
           VTF++LIDTL KEGK+IEA+KL EVMIQRGI PD   Y+SLMEGFCMV DLNSARELF+ 
Sbjct: 257 VTFSVLIDTLCKEGKVIEAKKLFEVMIQRGIVPDLFIYSSLMEGFCMVGDLNSARELFVS 316

Query: 62  --------NTISYTIVVDMLCKDEKYRECLDLF 86
                   + ISYT++++  CK  K  E + L+
Sbjct: 317 MPSKGCEPDVISYTVLINGYCKTLKVEEAMKLY 349

[Close]

BLAST of MELO3C015787 vs. NCBI nr
Match: KAA0059628.1 (pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK08161.1 pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa])

HSP 1 Score: 104.8 bits (260), Expect = 4.9e-19
Identity = 55/93 (59.14%), Postives = 68/93 (73.12%), Query Frame = 0


Query: 2   VTFTMLIDTLYKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSARELFL- 61
           VTF++LIDTL KEGK+IEA+KL EVMIQRGI PD   Y+SLMEGFCMV DLNSARELF+ 
Sbjct: 257 VTFSVLIDTLCKEGKVIEAKKLFEVMIQRGIVPDLFIYSSLMEGFCMVGDLNSARELFVS 316

Query: 62  --------NTISYTIVVDMLCKDEKYRECLDLF 86
                   + ISYT++++  CK  K  E + L+
Sbjct: 317 MPSKGCEPDVISYTVLINGYCKTLKVEEAMKLY 349

[Close]

BLAST of MELO3C015787 vs. ExPASy Swiss-Prot
Match: Q9LQ16 (Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana OX=3702 GN=At1g62910 PE=2 SV=1)

HSP 1 Score: 79.7 bits (195), Expect = 2.2e-14
Identity = 41/98 (41.84%), Postives = 61/98 (62.24%), Query Frame = 0


Query: 1   MVTFTMLIDTLYKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSAREL-- 60
           +VTF+ LID   KEGKL+EA+KL + MI+R I PD  TY+SL+ GFCM D L+ A+ +  
Sbjct: 328 VVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFE 387

Query: 61  -------FLNTISYTIVVDMLCKDEKYRECLDLFPRFS 90
                  F N ++Y+ ++   CK ++  E ++LF   S
Sbjct: 388 LMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMS 425

[Close]

BLAST of MELO3C015787 vs. ExPASy Swiss-Prot
Match: Q9LQ14 (Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=At1g62930 PE=2 SV=2)

HSP 1 Score: 79.3 bits (194), Expect = 2.9e-14
Identity = 41/98 (41.84%), Postives = 60/98 (61.22%), Query Frame = 0


Query: 1   MVTFTMLIDTLYKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSAREL-- 60
           +VTF+ LID   KEGKL+EA+KL + MI+R I PD  TY+SL+ GFCM D L+ A+ +  
Sbjct: 325 VVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFE 384

Query: 61  -------FLNTISYTIVVDMLCKDEKYRECLDLFPRFS 90
                  F N ++Y  ++   CK ++  E ++LF   S
Sbjct: 385 LMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMS 422

[Close]

BLAST of MELO3C015787 vs. ExPASy Swiss-Prot
Match: Q9CAN5 (Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidopsis thaliana OX=3702 GN=At1g63080 PE=2 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 2.9e-14
Identity = 41/94 (43.62%), Postives = 60/94 (63.83%), Query Frame = 0


Query: 1   MVTFTMLIDTLYKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSARELFL 60
           +VTF  LID   KEGKLIEA+KL + MIQR I P+  TYNSL+ GFCM D L+ A+++F 
Sbjct: 310 VVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFT 369

Query: 61  ---------NTISYTIVVDMLCKDEKYRECLDLF 86
                    + ++Y  +++  CK +K  + ++LF
Sbjct: 370 LMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELF 403

[Close]

BLAST of MELO3C015787 vs. ExPASy Swiss-Prot
Match: Q9CAM8 (Pentatricopeptide repeat-containing protein At1g63150 OS=Arabidopsis thaliana OX=3702 GN=At1g63150 PE=2 SV=1)

HSP 1 Score: 79.0 bits (193), Expect = 3.8e-14
Identity = 41/98 (41.84%), Postives = 61/98 (62.24%), Query Frame = 0


Query: 1   MVTFTMLIDTLYKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSARELFL 60
           +VTF  LID  +KEGKL+EA+KL E MIQR I PD+ TYN L+ GFCM + L+ A+++F 
Sbjct: 328 VVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFK 387

Query: 61  ---------NTISYTIVVDMLCKDEKYRECLDLFPRFS 90
                    N  +Y  +++  CK ++  + ++LF   S
Sbjct: 388 FMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMS 425

[Close]

BLAST of MELO3C015787 vs. ExPASy Swiss-Prot
Match: Q9SH26 (Pentatricopeptide repeat-containing protein At1g63400 OS=Arabidopsis thaliana OX=3702 GN=At1g63400 PE=2 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 5.0e-14
Identity = 41/98 (41.84%), Postives = 60/98 (61.22%), Query Frame = 0


Query: 1   MVTFTMLIDTLYKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSAREL-- 60
           +VTF  LID   KEGKL+EA+KL + MI+R I PD  TY+SL+ GFCM D L+ A+ +  
Sbjct: 330 VVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFE 389

Query: 61  -------FLNTISYTIVVDMLCKDEKYRECLDLFPRFS 90
                  F N ++Y  +++  CK ++  E ++LF   S
Sbjct: 390 LMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMS 427

[Close]

BLAST of MELO3C015787 vs. ExPASy TrEMBL
Match: A0A5D3DSE0 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00850 PE=4 SV=1)

HSP 1 Score: 165.2 bits (417), Expect = 1.5e-37
Identity = 104/220 (47.27%), Postives = 106/220 (48.18%), Query Frame = 0


Query: 1   MVTFTMLIDTLYKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSARELF- 60
           MVTFTMLIDTL KEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSAR+LF 
Sbjct: 1   MVTFTMLIDTLCKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSARDLFL 60

Query: 61  ------------------------------------------------------------ 110
                                                                       
Sbjct: 61  KLFQTGKVDDAKKLFGVMKTYGKVEIAWELLKKLSQEGLEPNVVTCNIMINGFCKVGQVD 120

[Close]

BLAST of MELO3C015787 vs. ExPASy TrEMBL
Match: A0A1S4DZA2 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103492634 PE=4 SV=1)

HSP 1 Score: 143.3 bits (360), Expect = 6.1e-31
Identity = 101/264 (38.26%), Postives = 107/264 (40.53%), Query Frame = 0


Query: 1   MVTFTMLIDTLYKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDD--------- 60
           MVTFTMLIDTLYKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMV++         
Sbjct: 1   MVTFTMLIDTLYKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVEEATNLYNEML 60

Query: 61  -----------------------LNSARELF----------------------------- 110
                                  +  A++LF                             
Sbjct: 61  QVGKRPDVKTYGTLLTELFQTGKVGDAKKLFGVMKTYGISADSCIHGIFLDGLCKNGCLF 120

[Close]

BLAST of MELO3C015787 vs. ExPASy TrEMBL
Match: A0A1S4DYL6 (pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like OS=Cucumis melo OX=3656 GN=LOC103492586 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.4e-19
Identity = 55/93 (59.14%), Postives = 68/93 (73.12%), Query Frame = 0


Query: 2   VTFTMLIDTLYKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSARELFL- 61
           VTF++LIDTL KEGK+IEA+KL EVMIQRGI PD   Y+SLMEGFCMV DLNSARELF+ 
Sbjct: 257 VTFSVLIDTLCKEGKVIEAKKLFEVMIQRGIVPDLFIYSSLMEGFCMVGDLNSARELFVS 316

Query: 62  --------NTISYTIVVDMLCKDEKYRECLDLF 86
                   + ISYT++++  CK  K  E + L+
Sbjct: 317 MPSKGCEPDVISYTVLINGYCKTLKVEEAMKLY 349

[Close]

BLAST of MELO3C015787 vs. ExPASy TrEMBL
Match: A0A5D3C8J0 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold886G00440 PE=4 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 2.4e-19
Identity = 55/93 (59.14%), Postives = 68/93 (73.12%), Query Frame = 0


Query: 2   VTFTMLIDTLYKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSARELFL- 61
           VTF++LIDTL KEGK+IEA+KL EVMIQRGI PD   Y+SLMEGFCMV DLNSARELF+ 
Sbjct: 257 VTFSVLIDTLCKEGKVIEAKKLFEVMIQRGIVPDLFIYSSLMEGFCMVGDLNSARELFVS 316

Query: 62  --------NTISYTIVVDMLCKDEKYRECLDLF 86
                   + ISYT++++  CK  K  E + L+
Sbjct: 317 MPSKGCEPDVISYTVLINGYCKTLKVEEAMKLY 349

[Close]

BLAST of MELO3C015787 vs. ExPASy TrEMBL
Match: A0A5A7UUW8 (Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold111G00730 PE=4 SV=1)

HSP 1 Score: 101.3 bits (251), Expect = 2.6e-18
Identity = 52/93 (55.91%), Postives = 69/93 (74.19%), Query Frame = 0


Query: 2   VTFTMLIDTLYKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSARELFL- 61
           VTF++LIDTL KEGK+IEA+KLLE+MI+ GI P+  TYNSL++GFCMV DLNSARELF+ 
Sbjct: 257 VTFSVLIDTLCKEGKVIEAKKLLELMIESGIVPNVFTYNSLLKGFCMVGDLNSARELFVS 316

Query: 62  --------NTISYTIVVDMLCKDEKYRECLDLF 86
                   + ISYT++++  CK  K  E + L+
Sbjct: 317 MPSKGCEPDVISYTVLINGYCKTLKVEEAMKLY 349

[Close]

BLAST of MELO3C015787 vs. TAIR 10
Match: AT1G62910.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 79.7 bits (195), Expect = 1.6e-15
Identity = 41/98 (41.84%), Postives = 61/98 (62.24%), Query Frame = 0


Query: 1   MVTFTMLIDTLYKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSAREL-- 60
           +VTF+ LID   KEGKL+EA+KL + MI+R I PD  TY+SL+ GFCM D L+ A+ +  
Sbjct: 328 VVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFE 387

Query: 61  -------FLNTISYTIVVDMLCKDEKYRECLDLFPRFS 90
                  F N ++Y+ ++   CK ++  E ++LF   S
Sbjct: 388 LMISKDCFPNVVTYSTLIKGFCKAKRVEEGMELFREMS 425

[Close]

BLAST of MELO3C015787 vs. TAIR 10
Match: AT1G62930.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 79.3 bits (194), Expect = 2.1e-15
Identity = 41/98 (41.84%), Postives = 60/98 (61.22%), Query Frame = 0


Query: 1   MVTFTMLIDTLYKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSAREL-- 60
           +VTF+ LID   KEGKL+EA+KL + MI+R I PD  TY+SL+ GFCM D L+ A+ +  
Sbjct: 325 VVTFSALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFE 384

Query: 61  -------FLNTISYTIVVDMLCKDEKYRECLDLFPRFS 90
                  F N ++Y  ++   CK ++  E ++LF   S
Sbjct: 385 LMISKDCFPNVVTYNTLIKGFCKAKRVEEGMELFREMS 422

[Close]

BLAST of MELO3C015787 vs. TAIR 10
Match: AT1G63080.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 79.3 bits (194), Expect = 2.1e-15
Identity = 41/94 (43.62%), Postives = 60/94 (63.83%), Query Frame = 0


Query: 1   MVTFTMLIDTLYKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSARELFL 60
           +VTF  LID   KEGKLIEA+KL + MIQR I P+  TYNSL+ GFCM D L+ A+++F 
Sbjct: 310 VVTFNSLIDAFAKEGKLIEAEKLFDEMIQRSIDPNIVTYNSLINGFCMHDRLDEAQQIFT 369

Query: 61  ---------NTISYTIVVDMLCKDEKYRECLDLF 86
                    + ++Y  +++  CK +K  + ++LF
Sbjct: 370 LMVSKDCLPDVVTYNTLINGFCKAKKVVDGMELF 403

[Close]

BLAST of MELO3C015787 vs. TAIR 10
Match: AT1G63150.1 (Tetratricopeptide repeat (TPR)-like superfamily protein )

HSP 1 Score: 79.0 bits (193), Expect = 2.7e-15
Identity = 41/98 (41.84%), Postives = 61/98 (62.24%), Query Frame = 0


Query: 1   MVTFTMLIDTLYKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSARELFL 60
           +VTF  LID  +KEGKL+EA+KL E MIQR I PD+ TYN L+ GFCM + L+ A+++F 
Sbjct: 328 VVTFNALIDAFFKEGKLVEAEKLHEEMIQRSIDPDTITYNLLINGFCMHNRLDEAKQMFK 387

Query: 61  ---------NTISYTIVVDMLCKDEKYRECLDLFPRFS 90
                    N  +Y  +++  CK ++  + ++LF   S
Sbjct: 388 FMVSKDCLPNIQTYNTLINGFCKCKRVEDGVELFREMS 425

[Close]

BLAST of MELO3C015787 vs. TAIR 10
Match: AT1G63400.1 (Pentatricopeptide repeat (PPR) superfamily protein )

HSP 1 Score: 78.6 bits (192), Expect = 3.5e-15
Identity = 41/98 (41.84%), Postives = 60/98 (61.22%), Query Frame = 0


Query: 1   MVTFTMLIDTLYKEGKLIEAQKLLEVMIQRGIFPDSCTYNSLMEGFCMVDDLNSAREL-- 60
           +VTF  LID   KEGKL+EA+KL + MI+R I PD  TY+SL+ GFCM D L+ A+ +  
Sbjct: 330 VVTFNALIDAFVKEGKLVEAEKLYDEMIKRSIDPDIFTYSSLINGFCMHDRLDEAKHMFE 389

Query: 61  -------FLNTISYTIVVDMLCKDEKYRECLDLFPRFS 90
                  F N ++Y  +++  CK ++  E ++LF   S
Sbjct: 390 LMISKDCFPNVVTYNTLINGFCKAKRIDEGVELFREMS 427

The following BLAST results are available for this feature:

BLAST of MELO3C015787 vs. NCBI nr


Match Name	E-value	Identity	Description
TYK26160.1	3.1e-37	47.27	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa]	[more]
XP_016901045.1	1.3e-30	38.26	PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-...	[more]
XP_011659273.2	9.9e-20	59.57	pentatricopeptide repeat-containing protein At3g22470, mitochondrial [Cucumis sa...	[more]
XP_008451225.1	4.9e-19	59.14	PREDICTED: pentatricopeptide repeat-containing protein At3g22470, mitochondrial-...	[more]
KAA0059628.1	4.9e-19	59.14	pentatricopeptide repeat-containing protein [Cucumis melo var. makuwa] >TYK08161...	[more]

BLAST of MELO3C015787 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9LQ16	2.2e-14	41.84	Pentatricopeptide repeat-containing protein At1g62910 OS=Arabidopsis thaliana OX...	[more]
Q9LQ14	2.9e-14	41.84	Pentatricopeptide repeat-containing protein At1g62930, chloroplastic OS=Arabidop...	[more]
Q9CAN5	2.9e-14	43.62	Pentatricopeptide repeat-containing protein At1g63080, mitochondrial OS=Arabidop...	[more]
Q9CAM8	3.8e-14	41.84	Pentatricopeptide repeat-containing protein At1g63150 OS=Arabidopsis thaliana OX...	[more]
Q9SH26	5.0e-14	41.84	Pentatricopeptide repeat-containing protein At1g63400 OS=Arabidopsis thaliana OX...	[more]

BLAST of MELO3C015787 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DSE0	1.5e-37	47.27	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A1S4DZA2	6.1e-31	38.26	pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like OS=Cuc...	[more]
A0A1S4DYL6	2.4e-19	59.14	pentatricopeptide repeat-containing protein At3g22470, mitochondrial-like OS=Cuc...	[more]
A0A5D3C8J0	2.4e-19	59.14	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]
A0A5A7UUW8	2.6e-18	55.91	Pentatricopeptide repeat-containing protein OS=Cucumis melo var. makuwa OX=11946...	[more]

BLAST of MELO3C015787 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G62910.1	1.6e-15	41.84	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G62930.1	2.1e-15	41.84	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G63080.1	2.1e-15	43.62	Pentatricopeptide repeat (PPR) superfamily protein	[more]
AT1G63150.1	2.7e-15	41.84	Tetratricopeptide repeat (TPR)-like superfamily protein	[more]
AT1G63400.1	3.5e-15	41.84	Pentatricopeptide repeat (PPR) superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR002885	Pentatricopeptide repeat	PFAM	PF01535	PPR	coord: 63..85 e-value: 0.0028 score: 17.8
IPR002885	Pentatricopeptide repeat	TIGRFAM	TIGR00756	TIGR00756	coord: 37..59 e-value: 7.3E-4 score: 17.6 coord: 63..85 e-value: 0.0022 score: 16.0 coord: 2..36 e-value: 5.2E-5 score: 21.2
IPR002885	Pentatricopeptide repeat	PFAM	PF13041	PPR_2	coord: 2..47 e-value: 1.4E-12 score: 47.6
IPR002885	Pentatricopeptide repeat	PROSITE	PS51375	PPR	coord: 1..34 score: 10.55579
IPR011990	Tetratricopeptide-like helical domain superfamily	GENE3D	1.25.40.10	Tetratricopeptide repeat domain	coord: 1..103 e-value: 5.2E-18 score: 67.5
None	No IPR available	PANTHER	PTHR47942	TETRATRICOPEPTIDE REPEAT (TPR)-LIKE SUPERFAMILY PROTEIN-RELATED	coord: 2..61
None	No IPR available	PANTHER	PTHR47942:SF38	REPEAT SUPERFAMILY PROTEIN, PUTATIVE-RELATED	coord: 2..61

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C015787.1	MELO3C015787.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0005515	protein binding