MELO3C015759 (gene) Melon (DHL92) v4

Overview
NameMELO3C015759
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrotrans_gag domain-containing protein
Locationchr01: 28540180 .. 28540389 (-)
RNA-Seq ExpressionMELO3C015759
SyntenyMELO3C015759
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCATCTAAGGAAGGATACAAGTCACCGGTTGAGCAAGTCGTTGAAGGGCCAACGACAAGAGGACGCACTGCACGACGTTCCCTATCGTGGAAGACGATGGCGACACAGAAGAAGGTCGAAGAGCATCTTACGAAGTTGGAGGAGGGATTGGAGGAGATGCAGGCCGAAGTCAACAAGATGAGCGGGTTGATGGAAGAGTTAGTCTAA

mRNA sequence

ATGGCATCTAAGGAAGGATACAAGTCACCGGTTGAGCAAGTCGTTGAAGGGCCAACGACAAGAGGACGCACTGCACGACGTTCCCTATCGTGGAAGACGATGGCGACACAGAAGAAGGTCGAAGAGCATCTTACGAAGTTGGAGGAGGGATTGGAGGAGATGCAGGCCGAAGTCAACAAGATGAGCGGGTTGATGGAAGAGTTAGTCTAA

Coding sequence (CDS)

ATGGCATCTAAGGAAGGATACAAGTCACCGGTTGAGCAAGTCGTTGAAGGGCCAACGACAAGAGGACGCACTGCACGACGTTCCCTATCGTGGAAGACGATGGCGACACAGAAGAAGGTCGAAGAGCATCTTACGAAGTTGGAGGAGGGATTGGAGGAGATGCAGGCCGAAGTCAACAAGATGAGCGGGTTGATGGAAGAGTTAGTCTAA

Protein sequence

MASKEGYKSPVEQVVEGPTTRGRTARRSLSWKTMATQKKVEEHLTKLEEGLEEMQAEVNKMSGLMEELV
Homology
BLAST of MELO3C015759 vs. NCBI nr
Match: KAE8637433.1 (hypothetical protein CSA_004611, partial [Cucumis sativus])

HSP 1 Score: 68.6 bits (166), Expect = 2.5e-08
Identity = 42/73 (57.53%), Postives = 52/73 (71.23%), Query Frame = 0

Query: 1  MASKEGYKSPVEQVVEGPTTRGRTARRSLSWK----TMATQKKVEEHLTKLEEGLEEMQA 60
          MAS+EGY+SPVEQVVEGPTTRGR A+RS S +    T  T+  VEE    LE  LEE+Q 
Sbjct: 1  MASREGYESPVEQVVEGPTTRGRAAQRSPSRQNKATTSTTRDVVEERFATLEGKLEEVQE 60

Query: 61 EVNKMSGLMEELV 70
          ++ + S LMEEL+
Sbjct: 61 KLGETSELMEELL 73

BLAST of MELO3C015759 vs. NCBI nr
Match: TYK04320.1 (uncharacterized protein E5676_scaffold527G00540 [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 2.3e-06
Identity = 38/73 (52.05%), Postives = 49/73 (67.12%), Query Frame = 0

Query: 1  MASKEGYKSPVEQVVEGPTTRGRTARRSLS----WKTMATQKKVEEHLTKLEEGLEEMQA 60
          MAS+EGY+SPVEQVVEGPT RG T +RS S     K +AT+   + HL  LEE  E++Q+
Sbjct: 1  MASQEGYESPVEQVVEGPTIRGLTTQRSPSKRPKTKALATKDTTDTHLANLEELFEDVQS 60

Query: 61 EVNKMSGLMEELV 70
           V ++S   E LV
Sbjct: 61 TVGRLSDDYEGLV 73

BLAST of MELO3C015759 vs. NCBI nr
Match: KAA0067893.1 (uncharacterized protein E6C27_scaffold138G00500 [Cucumis melo var. makuwa])

HSP 1 Score: 62.0 bits (149), Expect = 2.3e-06
Identity = 38/73 (52.05%), Postives = 49/73 (67.12%), Query Frame = 0

Query: 1  MASKEGYKSPVEQVVEGPTTRGRTARRSLS----WKTMATQKKVEEHLTKLEEGLEEMQA 60
          MAS+EGY+SPVEQVVEGPT RG T +RS S     K +AT+   + HL  LEE  E++Q+
Sbjct: 1  MASQEGYESPVEQVVEGPTIRGLTTQRSPSKRPKTKALATKDTTDTHLANLEELFEDVQS 60

Query: 61 EVNKMSGLMEELV 70
           V ++S   E LV
Sbjct: 61 TVGRLSDDYEGLV 73

BLAST of MELO3C015759 vs. NCBI nr
Match: TYK30387.1 (uncharacterized protein E5676_scaffold575G00690 [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 4.0e-06
Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 0

Query: 1  MASKEGYKSPVEQVVEGPTTRGR-----TARRSLSWKTMATQKKVEEHLTKLEEGLEEMQ 60
          M++KEG+ SPVEQV+EGP TRGR       RRS S K +A ++ V+  LT LE+G+E++Q
Sbjct: 1  MSAKEGHTSPVEQVIEGPVTRGRKEQHSPTRRSKS-KGLAVREHVDTRLTNLEQGMEDVQ 60

Query: 61 AEVNKMSGLMEELV 70
            V ++S   EELV
Sbjct: 61 LAVGRLSDNFEELV 73

BLAST of MELO3C015759 vs. NCBI nr
Match: KAA0032830.1 (uncharacterized protein E6C27_scaffold708G00950 [Cucumis melo var. makuwa])

HSP 1 Score: 61.2 bits (147), Expect = 4.0e-06
Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 0

Query: 1   MASKEGYKSPVEQVVEGPTTRGR-----TARRSLSWKTMATQKKVEEHLTKLEEGLEEMQ 60
           M++KEG+ SPVEQV+EGP TRGR       RRS S K +A ++ V+  LT LE+G+E++Q
Sbjct: 57  MSAKEGHTSPVEQVIEGPVTRGRKEQHSPTRRSKS-KGLAVREHVDTRLTNLEQGMEDVQ 116

Query: 61  AEVNKMSGLMEELV 70
             V ++S   EELV
Sbjct: 117 LAVGRLSDNFEELV 129

BLAST of MELO3C015759 vs. ExPASy TrEMBL
Match: A0A5A7VIG6 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold138G00500 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-06
Identity = 38/73 (52.05%), Postives = 49/73 (67.12%), Query Frame = 0

Query: 1  MASKEGYKSPVEQVVEGPTTRGRTARRSLS----WKTMATQKKVEEHLTKLEEGLEEMQA 60
          MAS+EGY+SPVEQVVEGPT RG T +RS S     K +AT+   + HL  LEE  E++Q+
Sbjct: 1  MASQEGYESPVEQVVEGPTIRGLTTQRSPSKRPKTKALATKDTTDTHLANLEELFEDVQS 60

Query: 61 EVNKMSGLMEELV 70
           V ++S   E LV
Sbjct: 61 TVGRLSDDYEGLV 73

BLAST of MELO3C015759 vs. ExPASy TrEMBL
Match: A0A5D3BYX0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold527G00540 PE=4 SV=1)

HSP 1 Score: 62.0 bits (149), Expect = 1.1e-06
Identity = 38/73 (52.05%), Postives = 49/73 (67.12%), Query Frame = 0

Query: 1  MASKEGYKSPVEQVVEGPTTRGRTARRSLS----WKTMATQKKVEEHLTKLEEGLEEMQA 60
          MAS+EGY+SPVEQVVEGPT RG T +RS S     K +AT+   + HL  LEE  E++Q+
Sbjct: 1  MASQEGYESPVEQVVEGPTIRGLTTQRSPSKRPKTKALATKDTTDTHLANLEELFEDVQS 60

Query: 61 EVNKMSGLMEELV 70
           V ++S   E LV
Sbjct: 61 TVGRLSDDYEGLV 73

BLAST of MELO3C015759 vs. ExPASy TrEMBL
Match: A0A5A7SPK5 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold708G00950 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.9e-06
Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 0

Query: 1   MASKEGYKSPVEQVVEGPTTRGR-----TARRSLSWKTMATQKKVEEHLTKLEEGLEEMQ 60
           M++KEG+ SPVEQV+EGP TRGR       RRS S K +A ++ V+  LT LE+G+E++Q
Sbjct: 57  MSAKEGHTSPVEQVIEGPVTRGRKEQHSPTRRSKS-KGLAVREHVDTRLTNLEQGMEDVQ 116

Query: 61  AEVNKMSGLMEELV 70
             V ++S   EELV
Sbjct: 117 LAVGRLSDNFEELV 129

BLAST of MELO3C015759 vs. ExPASy TrEMBL
Match: A0A5D3E2T1 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold575G00690 PE=4 SV=1)

HSP 1 Score: 61.2 bits (147), Expect = 1.9e-06
Identity = 37/74 (50.00%), Postives = 51/74 (68.92%), Query Frame = 0

Query: 1  MASKEGYKSPVEQVVEGPTTRGR-----TARRSLSWKTMATQKKVEEHLTKLEEGLEEMQ 60
          M++KEG+ SPVEQV+EGP TRGR       RRS S K +A ++ V+  LT LE+G+E++Q
Sbjct: 1  MSAKEGHTSPVEQVIEGPVTRGRKEQHSPTRRSKS-KGLAVREHVDTRLTNLEQGMEDVQ 60

Query: 61 AEVNKMSGLMEELV 70
            V ++S   EELV
Sbjct: 61 LAVGRLSDNFEELV 73

BLAST of MELO3C015759 vs. ExPASy TrEMBL
Match: A0A5A7THC0 (Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold370G00130 PE=4 SV=1)

HSP 1 Score: 59.7 bits (143), Expect = 5.6e-06
Identity = 36/74 (48.65%), Postives = 51/74 (68.92%), Query Frame = 0

Query: 1  MASKEGYKSPVEQVVEGPTTRGR-----TARRSLSWKTMATQKKVEEHLTKLEEGLEEMQ 60
          M+++EG+ SPVEQV+EGP TRGR       RRS S K  A ++ V+  LT LE+G+E++Q
Sbjct: 1  MSAEEGHTSPVEQVIEGPVTRGRKEQHSPTRRSKS-KGPAVREHVDTRLTNLEQGMEDVQ 60

Query: 61 AEVNKMSGLMEELV 70
            V ++S + EELV
Sbjct: 61 LAVGRLSEIFEELV 73

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAE8637433.12.5e-0857.53hypothetical protein CSA_004611, partial [Cucumis sativus][more]
TYK04320.12.3e-0652.05uncharacterized protein E5676_scaffold527G00540 [Cucumis melo var. makuwa][more]
KAA0067893.12.3e-0652.05uncharacterized protein E6C27_scaffold138G00500 [Cucumis melo var. makuwa][more]
TYK30387.14.0e-0650.00uncharacterized protein E5676_scaffold575G00690 [Cucumis melo var. makuwa][more]
KAA0032830.14.0e-0650.00uncharacterized protein E6C27_scaffold708G00950 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VIG61.1e-0652.05Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3BYX01.1e-0652.05Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SPK51.9e-0650.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3E2T11.9e-0650.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7THC05.6e-0648.65Reverse transcriptase domain-containing protein OS=Cucumis melo var. makuwa OX=1... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 37..69
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 1..28

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C015759.1MELO3C015759.1mRNA