MELO3C015330 (gene) Melon (DHL92) v4

Overview
NameMELO3C015330
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRoot phototropism protein 3-like isoform X1
Locationchr02: 782697 .. 783224 (-)
RNA-Seq ExpressionMELO3C015330
SyntenyMELO3C015330
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAAGGATAAAGAAGAGCTTGCTAGTACTCTTTATGGAGGAAGTAACTATTGGCCATATCGAATGAAGTTGACAACCGATCAGTTACGTTGGGATAGCCTCAAGATTTCGGAATCAAAGGAATTCGAGGAACTGCTTTCAAAGAACATGAATGAAGGAAGCTATAGAGATTTGGCTGAGATGATCCCTATTGAAGTATCAATCTATGATGTTGATATCTGTGAAACTTTTAGGGTGAAGTTGGTGAAGAAAGAGGCATTTTGGTTTGAACCATTGCCTCTAGTTGGTGAGAAGTCAAAGAAGGATAAGTTTGGTTCTCATTCCACTGCAAAATTGAATGGCAAGTCCTACAAGGAAAAGAAAGAGTTTGTTTATTCGATCGAGCCTTTTCGCCACATTATAAAGAAGCGGGGCCTAGATTATCAACAAGAGATTGGTTTGCGTTGGTCGGGTAGCAAAGCGATGGATCGGTTTGACTTTTCAGTTTTATCTTCTCCAAGGTTGAGCTTAAACAACTTGATGATCTAA

mRNA sequence

ATGAAGGATAAAGAAGAGCTTGCTAGTACTCTTTATGGAGGAAGTAACTATTGGCCATATCGAATGAAGTTGACAACCGATCAGTTACGTTGGGATAGCCTCAAGATTTCGGAATCAAAGGAATTCGAGGAACTGCTTTCAAAGAACATGAATGAAGGAAGCTATAGAGATTTGGCTGAGATGATCCCTATTGAAGTATCAATCTATGATGTTGATATCTGTGAAACTTTTAGGGTGAAGTTGGTGAAGAAAGAGGCATTTTGGTTTGAACCATTGCCTCTAGTTGGTGAGAAGTCAAAGAAGGATAAGTTTGGTTCTCATTCCACTGCAAAATTGAATGGCAAGTCCTACAAGGAAAAGAAAGAGTTTGTTTATTCGATCGAGCCTTTTCGCCACATTATAAAGAAGCGGGGCCTAGATTATCAACAAGAGATTGGTTTGCGTTGGTCGGGTAGCAAAGCGATGGATCGGTTTGACTTTTCAGTTTTATCTTCTCCAAGGTTGAGCTTAAACAACTTGATGATCTAA

Coding sequence (CDS)

ATGAAGGATAAAGAAGAGCTTGCTAGTACTCTTTATGGAGGAAGTAACTATTGGCCATATCGAATGAAGTTGACAACCGATCAGTTACGTTGGGATAGCCTCAAGATTTCGGAATCAAAGGAATTCGAGGAACTGCTTTCAAAGAACATGAATGAAGGAAGCTATAGAGATTTGGCTGAGATGATCCCTATTGAAGTATCAATCTATGATGTTGATATCTGTGAAACTTTTAGGGTGAAGTTGGTGAAGAAAGAGGCATTTTGGTTTGAACCATTGCCTCTAGTTGGTGAGAAGTCAAAGAAGGATAAGTTTGGTTCTCATTCCACTGCAAAATTGAATGGCAAGTCCTACAAGGAAAAGAAAGAGTTTGTTTATTCGATCGAGCCTTTTCGCCACATTATAAAGAAGCGGGGCCTAGATTATCAACAAGAGATTGGTTTGCGTTGGTCGGGTAGCAAAGCGATGGATCGGTTTGACTTTTCAGTTTTATCTTCTCCAAGGTTGAGCTTAAACAACTTGATGATCTAA

Protein sequence

MKDKEELASTLYGGSNYWPYRMKLTTDQLRWDSLKISESKEFEELLSKNMNEGSYRDLAEMIPIEVSIYDVDICETFRVKLVKKEAFWFEPLPLVGEKSKKDKFGSHSTAKLNGKSYKEKKEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKAMDRFDFSVLSSPRLSLNNLMI
Homology
BLAST of MELO3C015330 vs. NCBI nr
Match: TYK10230.1 (root phototropism protein 3-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 353.6 bits (906), Expect = 9.8e-94
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0

Query: 1   MKDKEELASTLYGGSNYWPYRMKLTTDQLRWDSLKISESKEFEELLSKNMNEGSYRDLAE 60
           MKDKEELASTLYGGSNYWPYRMKLTTDQLRWDSLKISESKEFEELLSKNMNEGSYRDLAE
Sbjct: 582 MKDKEELASTLYGGSNYWPYRMKLTTDQLRWDSLKISESKEFEELLSKNMNEGSYRDLAE 641

Query: 61  MIPIEVSIYDVDICETFRVKLVKKEAFWFEPLPLVGEKSKKDKFGSHSTAKLNGKSYKEK 120
           MIPIEVSIYDVDICETFRVKLVKKEAFWFEPLPLVGEKSKKDKFGSHSTAKLNGKSYKEK
Sbjct: 642 MIPIEVSIYDVDICETFRVKLVKKEAFWFEPLPLVGEKSKKDKFGSHSTAKLNGKSYKEK 701

Query: 121 KEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKAMDRFDFSVLSSPRLSLNNLMI 176
           KEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKAMDRFDFSVLSSPRLSLNNLMI
Sbjct: 702 KEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKAMDRFDFSVLSSPRLSLNNLMI 756

BLAST of MELO3C015330 vs. NCBI nr
Match: KAA0050878.1 (root phototropism protein 3-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 352.4 bits (903), Expect = 2.2e-93
Identity = 174/175 (99.43%), Postives = 175/175 (100.00%), Query Frame = 0

Query: 1   MKDKEELASTLYGGSNYWPYRMKLTTDQLRWDSLKISESKEFEELLSKNMNEGSYRDLAE 60
           MKDKEELASTLYGGSNYWPYRMKLTTDQLRWDSLKISESK+FEELLSKNMNEGSYRDLAE
Sbjct: 582 MKDKEELASTLYGGSNYWPYRMKLTTDQLRWDSLKISESKQFEELLSKNMNEGSYRDLAE 641

Query: 61  MIPIEVSIYDVDICETFRVKLVKKEAFWFEPLPLVGEKSKKDKFGSHSTAKLNGKSYKEK 120
           MIPIEVSIYDVDICETFRVKLVKKEAFWFEPLPLVGEKSKKDKFGSHSTAKLNGKSYKEK
Sbjct: 642 MIPIEVSIYDVDICETFRVKLVKKEAFWFEPLPLVGEKSKKDKFGSHSTAKLNGKSYKEK 701

Query: 121 KEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKAMDRFDFSVLSSPRLSLNNLMI 176
           KEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKAMDRFDFSVLSSPRLSLNNLMI
Sbjct: 702 KEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKAMDRFDFSVLSSPRLSLNNLMI 756

BLAST of MELO3C015330 vs. NCBI nr
Match: KGN66088.1 (hypothetical protein Csa_007428 [Cucumis sativus])

HSP 1 Score: 334.0 bits (855), Expect = 8.0e-88
Identity = 164/175 (93.71%), Postives = 170/175 (97.14%), Query Frame = 0

Query: 1   MKDKEELASTLYGGSNYWPYRMKLTTDQLRWDSLKISESKEFEELLSKNMNEGSYRDLAE 60
           MKDKEELAST+YGGSNYWPYRMKLTTDQLRWDSLKISE KEFEELLSKNMNEGSYRDLAE
Sbjct: 16  MKDKEELASTIYGGSNYWPYRMKLTTDQLRWDSLKISEPKEFEELLSKNMNEGSYRDLAE 75

Query: 61  MIPIEVSIYDVDICETFRVKLVKKEAFWFEPLPLVGEKSKKDKFGSHSTAKLNGKSYKEK 120
           MIPIEVSIYDVDICETF+VKLVKKEAFWFEPLPLVGEKSKKDK  SH+TAK +GKS+KEK
Sbjct: 76  MIPIEVSIYDVDICETFKVKLVKKEAFWFEPLPLVGEKSKKDKLCSHATAKSSGKSHKEK 135

Query: 121 KEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKAMDRFDFSVLSSPRLSLNNLMI 176
           KEFVYSIEPFRHIIKKRGLDYQQEIG RWSGSK+MDRFDFSVLSSPRLSLNNLMI
Sbjct: 136 KEFVYSIEPFRHIIKKRGLDYQQEIGFRWSGSKSMDRFDFSVLSSPRLSLNNLMI 190

BLAST of MELO3C015330 vs. NCBI nr
Match: KAG6590385.1 (hypothetical protein SDJN03_15808, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 260.0 bits (663), Expect = 1.5e-65
Identity = 128/174 (73.56%), Postives = 143/174 (82.18%), Query Frame = 0

Query: 1   MKDKEELASTLYGGSNYWPYRMKLTTDQLRWDSLKISESKEFEELLSKNMNEGSYRDLAE 60
           MKDKEEL S +YGG NYWPYRMKL+TD+LRWDSLKISE  EFEE++ +NMNEGSYRDL E
Sbjct: 150 MKDKEELISRIYGGGNYWPYRMKLSTDRLRWDSLKISEGTEFEEMMLRNMNEGSYRDLNE 209

Query: 61  MIPIEVSIYDVDICETFRVKLVKKEAFWFEPLPLVGEKSKKDKFGSHSTAKLNGKSYKEK 120
           MIPIE+SI+DVDICET++VKLVKKEAFWFEPLPLVGEKS K                K +
Sbjct: 210 MIPIEISIFDVDICETYKVKLVKKEAFWFEPLPLVGEKSSK----------------KYQ 269

Query: 121 KEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKAMDRFDFSVLSSPRLSLNNLM 175
             FVYSIEPFRHI+KKRGLDY QEIGLRWSGSK +DRFDFSVLSS RLS+ NL+
Sbjct: 270 SSFVYSIEPFRHIVKKRGLDYGQEIGLRWSGSKTIDRFDFSVLSSSRLSVYNLI 307

BLAST of MELO3C015330 vs. NCBI nr
Match: XP_022961362.1 (uncharacterized protein LOC111461952 [Cucurbita moschata])

HSP 1 Score: 259.6 bits (662), Expect = 1.9e-65
Identity = 127/174 (72.99%), Postives = 143/174 (82.18%), Query Frame = 0

Query: 1   MKDKEELASTLYGGSNYWPYRMKLTTDQLRWDSLKISESKEFEELLSKNMNEGSYRDLAE 60
           MKDKEEL S +YGG NYWPYRMKL+TD+LRWDSLKISE  EFEE++ +NMNEGSYRDL E
Sbjct: 82  MKDKEELISRIYGGGNYWPYRMKLSTDRLRWDSLKISEGTEFEEMMLRNMNEGSYRDLNE 141

Query: 61  MIPIEVSIYDVDICETFRVKLVKKEAFWFEPLPLVGEKSKKDKFGSHSTAKLNGKSYKEK 120
           MIPIE+SI+DVDICET++VKLVKKEAFWFEPLPLVGEKS K                K +
Sbjct: 142 MIPIEISIFDVDICETYKVKLVKKEAFWFEPLPLVGEKSSK----------------KYQ 201

Query: 121 KEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKAMDRFDFSVLSSPRLSLNNLM 175
             FVYSIEPFRHI+KKRGLDY QEIGLRWSGSK +DRFDFS+LSS RLS+ NL+
Sbjct: 202 SSFVYSIEPFRHIVKKRGLDYGQEIGLRWSGSKTIDRFDFSILSSSRLSVYNLI 239

BLAST of MELO3C015330 vs. ExPASy TrEMBL
Match: A0A5D3CFT9 (Root phototropism protein 3-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold16G003770 PE=3 SV=1)

HSP 1 Score: 353.6 bits (906), Expect = 4.7e-94
Identity = 175/175 (100.00%), Postives = 175/175 (100.00%), Query Frame = 0

Query: 1   MKDKEELASTLYGGSNYWPYRMKLTTDQLRWDSLKISESKEFEELLSKNMNEGSYRDLAE 60
           MKDKEELASTLYGGSNYWPYRMKLTTDQLRWDSLKISESKEFEELLSKNMNEGSYRDLAE
Sbjct: 582 MKDKEELASTLYGGSNYWPYRMKLTTDQLRWDSLKISESKEFEELLSKNMNEGSYRDLAE 641

Query: 61  MIPIEVSIYDVDICETFRVKLVKKEAFWFEPLPLVGEKSKKDKFGSHSTAKLNGKSYKEK 120
           MIPIEVSIYDVDICETFRVKLVKKEAFWFEPLPLVGEKSKKDKFGSHSTAKLNGKSYKEK
Sbjct: 642 MIPIEVSIYDVDICETFRVKLVKKEAFWFEPLPLVGEKSKKDKFGSHSTAKLNGKSYKEK 701

Query: 121 KEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKAMDRFDFSVLSSPRLSLNNLMI 176
           KEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKAMDRFDFSVLSSPRLSLNNLMI
Sbjct: 702 KEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKAMDRFDFSVLSSPRLSLNNLMI 756

BLAST of MELO3C015330 vs. ExPASy TrEMBL
Match: A0A5A7U6J2 (Root phototropism protein 3-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold761G00030 PE=3 SV=1)

HSP 1 Score: 352.4 bits (903), Expect = 1.1e-93
Identity = 174/175 (99.43%), Postives = 175/175 (100.00%), Query Frame = 0

Query: 1   MKDKEELASTLYGGSNYWPYRMKLTTDQLRWDSLKISESKEFEELLSKNMNEGSYRDLAE 60
           MKDKEELASTLYGGSNYWPYRMKLTTDQLRWDSLKISESK+FEELLSKNMNEGSYRDLAE
Sbjct: 582 MKDKEELASTLYGGSNYWPYRMKLTTDQLRWDSLKISESKQFEELLSKNMNEGSYRDLAE 641

Query: 61  MIPIEVSIYDVDICETFRVKLVKKEAFWFEPLPLVGEKSKKDKFGSHSTAKLNGKSYKEK 120
           MIPIEVSIYDVDICETFRVKLVKKEAFWFEPLPLVGEKSKKDKFGSHSTAKLNGKSYKEK
Sbjct: 642 MIPIEVSIYDVDICETFRVKLVKKEAFWFEPLPLVGEKSKKDKFGSHSTAKLNGKSYKEK 701

Query: 121 KEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKAMDRFDFSVLSSPRLSLNNLMI 176
           KEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKAMDRFDFSVLSSPRLSLNNLMI
Sbjct: 702 KEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKAMDRFDFSVLSSPRLSLNNLMI 756

BLAST of MELO3C015330 vs. ExPASy TrEMBL
Match: A0A0A0LWG5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G570130 PE=4 SV=1)

HSP 1 Score: 334.0 bits (855), Expect = 3.9e-88
Identity = 164/175 (93.71%), Postives = 170/175 (97.14%), Query Frame = 0

Query: 1   MKDKEELASTLYGGSNYWPYRMKLTTDQLRWDSLKISESKEFEELLSKNMNEGSYRDLAE 60
           MKDKEELAST+YGGSNYWPYRMKLTTDQLRWDSLKISE KEFEELLSKNMNEGSYRDLAE
Sbjct: 16  MKDKEELASTIYGGSNYWPYRMKLTTDQLRWDSLKISEPKEFEELLSKNMNEGSYRDLAE 75

Query: 61  MIPIEVSIYDVDICETFRVKLVKKEAFWFEPLPLVGEKSKKDKFGSHSTAKLNGKSYKEK 120
           MIPIEVSIYDVDICETF+VKLVKKEAFWFEPLPLVGEKSKKDK  SH+TAK +GKS+KEK
Sbjct: 76  MIPIEVSIYDVDICETFKVKLVKKEAFWFEPLPLVGEKSKKDKLCSHATAKSSGKSHKEK 135

Query: 121 KEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKAMDRFDFSVLSSPRLSLNNLMI 176
           KEFVYSIEPFRHIIKKRGLDYQQEIG RWSGSK+MDRFDFSVLSSPRLSLNNLMI
Sbjct: 136 KEFVYSIEPFRHIIKKRGLDYQQEIGFRWSGSKSMDRFDFSVLSSPRLSLNNLMI 190

BLAST of MELO3C015330 vs. ExPASy TrEMBL
Match: A0A6J1HA02 (uncharacterized protein LOC111461952 OS=Cucurbita moschata OX=3662 GN=LOC111461952 PE=4 SV=1)

HSP 1 Score: 259.6 bits (662), Expect = 9.3e-66
Identity = 127/174 (72.99%), Postives = 143/174 (82.18%), Query Frame = 0

Query: 1   MKDKEELASTLYGGSNYWPYRMKLTTDQLRWDSLKISESKEFEELLSKNMNEGSYRDLAE 60
           MKDKEEL S +YGG NYWPYRMKL+TD+LRWDSLKISE  EFEE++ +NMNEGSYRDL E
Sbjct: 82  MKDKEELISRIYGGGNYWPYRMKLSTDRLRWDSLKISEGTEFEEMMLRNMNEGSYRDLNE 141

Query: 61  MIPIEVSIYDVDICETFRVKLVKKEAFWFEPLPLVGEKSKKDKFGSHSTAKLNGKSYKEK 120
           MIPIE+SI+DVDICET++VKLVKKEAFWFEPLPLVGEKS K                K +
Sbjct: 142 MIPIEISIFDVDICETYKVKLVKKEAFWFEPLPLVGEKSSK----------------KYQ 201

Query: 121 KEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKAMDRFDFSVLSSPRLSLNNLM 175
             FVYSIEPFRHI+KKRGLDY QEIGLRWSGSK +DRFDFS+LSS RLS+ NL+
Sbjct: 202 SSFVYSIEPFRHIVKKRGLDYGQEIGLRWSGSKTIDRFDFSILSSSRLSVYNLI 239

BLAST of MELO3C015330 vs. ExPASy TrEMBL
Match: A0A6J1HUG6 (uncharacterized protein LOC111467916 OS=Cucurbita maxima OX=3661 GN=LOC111467916 PE=4 SV=1)

HSP 1 Score: 258.8 bits (660), Expect = 1.6e-65
Identity = 128/174 (73.56%), Postives = 142/174 (81.61%), Query Frame = 0

Query: 1   MKDKEELASTLYGGSNYWPYRMKLTTDQLRWDSLKISESKEFEELLSKNMNEGSYRDLAE 60
           MKDKEEL S +YGG NYWPYRMKL+TD+LRWDSLKISE  EFEE++ +NMNEGSYRDL E
Sbjct: 82  MKDKEELISRIYGGGNYWPYRMKLSTDRLRWDSLKISEDTEFEEMMLRNMNEGSYRDLNE 141

Query: 61  MIPIEVSIYDVDICETFRVKLVKKEAFWFEPLPLVGEKSKKDKFGSHSTAKLNGKSYKEK 120
           MIPIE+SI+DVDICET++VKLVKKEAFWFEPLPLVGEKSK                 K +
Sbjct: 142 MIPIEISIFDVDICETYKVKLVKKEAFWFEPLPLVGEKSK-----------------KYQ 201

Query: 121 KEFVYSIEPFRHIIKKRGLDYQQEIGLRWSGSKAMDRFDFSVLSSPRLSLNNLM 175
             FVYSIEPFRHI+KKRGLDY QEIGLRWSGSK +DRFDFSVLSS RLSL  L+
Sbjct: 202 SSFVYSIEPFRHIVKKRGLDYGQEIGLRWSGSKTIDRFDFSVLSSSRLSLYTLI 238

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK10230.19.8e-94100.00root phototropism protein 3-like isoform X1 [Cucumis melo var. makuwa][more]
KAA0050878.12.2e-9399.43root phototropism protein 3-like isoform X1 [Cucumis melo var. makuwa][more]
KGN66088.18.0e-8893.71hypothetical protein Csa_007428 [Cucumis sativus][more]
KAG6590385.11.5e-6573.56hypothetical protein SDJN03_15808, partial [Cucurbita argyrosperma subsp. sorori... [more]
XP_022961362.11.9e-6572.99uncharacterized protein LOC111461952 [Cucurbita moschata][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CFT94.7e-94100.00Root phototropism protein 3-like isoform X1 OS=Cucumis melo var. makuwa OX=11946... [more]
A0A5A7U6J21.1e-9399.43Root phototropism protein 3-like isoform X1 OS=Cucumis melo var. makuwa OX=11946... [more]
A0A0A0LWG53.9e-8893.71Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_1G570130 PE=4 SV=1[more]
A0A6J1HA029.3e-6672.99uncharacterized protein LOC111461952 OS=Cucurbita moschata OX=3662 GN=LOC1114619... [more]
A0A6J1HUG61.6e-6573.56uncharacterized protein LOC111467916 OS=Cucurbita maxima OX=3661 GN=LOC111467916... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C015330.1MELO3C015330.1mRNA