MELO3C014949 (gene) Melon (DHL92) v4

Overview


Name	MELO3C014949
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Protein LTV1-like protein
Location	chr06: 19385473 .. 19386907 (+)
RNA-Seq Expression	MELO3C014949
Synteny	MELO3C014949

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATTTTCCTTCTTCCCCGATTTTCTTCTTCTAGATTTTCTCCAAACTCACGTAGCTCCAGTCGTTCGTTCGTGCGCTACCACCAAAGCTTCAATCAACCGTTTGGACACCACATCCGAGCTTAAGTCCATTCCGTTCTCTCTAAATGTGCGTCAATCGTGCGCTCCAATCATCTGCTTCACGTTATCGTCTGGAGATCGGAGACACATAAATTTTTCTCTCTTCTTATCTCACTTTCTGCTGCATCAAACCCTAAGCCCTCTCTTCACTCTCTTCTAGTTCTATCCGATCTTCAACGTTTGGCCCCTCCCCTCCGATCAGACGACGCCGGTGGCTGCCGGTCACCCTCTTCTAGATGACGCCGACGATTGTATCTCCGATTAGACCAGCCGTACTGGCCCTCCGTTTTGGTCTCGGTTTAAAGGTTTTTGCTCTTTTGTTTTCGTTCTTTTTTCTGTATCAATGTTTGAGGAATGTTTCAACTGGTTTGATGGAACACACACACATATGTATATGCTTATTTATTCGTTACTTCATATTGCGATGGAACTGCTGCCACCGATCGTGTTTTTGTTTGGGTCATCTATGCAATCTCGTGGGGAAGCTGGTGGAACGTCGTCACCAGAAAATGTCAGAAGAGAGATTTTGGAGCTTGAGTTCCCTGATGATGGTTACAATTATTTGCTGTATCTTCGGGTGATTAGGAATACTGGTAATGGTTCGACATTTTATCAGAACCCAAGGCCAAGCTGAATCATGTTCCACTCGATGAGAAGGTTGGTTGTTTTATTTTGTTTAGAATACAAACTATTTTTTGGCATGTGGGCTTTATTCATAATATGGATTGGATACATAAGTTAGCACATTCAACATTATACTGTGGTTACCTATTTATGAAAATAAGCAACAGTTTGGGAAGCTTTTGTGTTGTCTCTGGATAAGTTTTTTTCCCTTTCGTACAATAGCGTTTCTTTGATTGTTTTGTAGGCTTATGACGCCTTTCGTACAATAGCGTTTCTTTGATTGTTTTGTAGGCTTATGACGCCTCCAGAATGATTGTTTCTAAAGTGAACTTTGATGCCAATGAGAACGTATACGAAGCTGCATCCAAGATTGTTGGAGTCAGGATTCAAAATGTTGTTGACCTTGAAATAGCTGCCCTTCTTGATGACGATGATTTATTGCGGTTTGGTTCTGATGTGACGATGATTTATTGCGATTTGGTTCTGATGTGAGTTCCCAATCGTTATACATTGCAGTTCTGTAGATTTCTGGTTCTCACATTCTTGTGATTATATTTTATATTTTGCAGGCCTTTTTCTATGTCGTTCATGATCTCTAGCTTTATTATGGAGCACTTTGGGCTGCTATAGGTTCCAATAAGTATTAGGTAAATCAATTGGATCCTTATTCTTAGTTTGGCTAGGAATGATTGTA

mRNA sequence

ATTTTCCTTCTTCCCCGATTTTCTTCTTCTAGATTTTCTCCAAACTCACGTAGCTCCAGTCGTTCGTTCGTGCGCTACCACCAAAGCTTCAATCAACCGTTTGGACACCACATCCGAGCTTAAGTCCATTCCGTTCTCTCTAAATGTGCGTCAATCGTGCGCTCCAATCATCTGCTTCACGTTATCGTCTGGAGATCGGAGACACATAAATTTTTCTCTCTTCTTATCTCACTTTCTGCTGCATCAAACCCTAAGCCCTCTCTTCACTCTCTTCTAGTTCTATCCGATCTTCAACGTTTGGCCCCTCCCCTCCGATCAGACGACGCCGGTGGCTGCCGGTCACCCTCTTCTAGATGACGCCGACGATTGTATCTCCGATTAGACCAGCCGTACTGGCCCTCCGTTTTGGTCTCGGTTTAAAGGTTTTTGCTCTTTTGTTTTCGTTCTTTTTTCTGTATCAATGTTTGAGGAATGTTTCAACTGGTTTGATGGAACACACACACATATGTATATGCTTATTTATTCGTTACTTCATATTGCGATGGAACTGCTGCCACCGATCGTGTTTTTGTTTGGGTCATCTATGCAATCTCGTGGGGAAGCTGGTGGAACGTCGTCACCAGAAAATGTCAGAAGAGAGATTTTGGAGCTTGAGTTCCCTGATGATGGTTACAATTATTTGCTGTATCTTCGGGCTTATGACGCCTCCAGAATGATTGTTTCTAAAGTGAACTTTGATGCCAATGAGAACGTATACGAAGCTGCATCCAAGATTGTTGGAGTCAGGATTCAAAATGTTGTTGACCTTGAAATAGCTGCCCTTCTTGATGACGATGATTTATTGCGGTTTGGTTCTGATGTGACGATGATTTATTGCGATTTGGTTCTGATGTGAGTTCCCAATCGTTATACATTGCAGTTCTGTAGATTTCTGGTTCTCACATTCTTGTGATTATATTTTATATTTTGCAGGCCTTTTTCTATGTCGTTCATGATCTCTAGCTTTATTATGGAGCACTTTGGGCTGCTATAGGTTCCAATAAGTATTAGGTAAATCAATTGGATCCTTATTCTTAGTTTGGCTAGGAATGATTGTA

Coding sequence (CDS)

ATGTTTGAGGAATGTTTCAACTGGTTTGATGGAACACACACACATATGTATATGCTTATTTATTCGTTACTTCATATTGCGATGGAACTGCTGCCACCGATCGTGTTTTTGTTTGGGTCATCTATGCAATCTCGTGGGGAAGCTGGTGGAACGTCGTCACCAGAAAATGTCAGAAGAGAGATTTTGGAGCTTGAGTTCCCTGATGATGGTTACAATTATTTGCTGTATCTTCGGGCTTATGACGCCTCCAGAATGATTGTTTCTAAAGTGAACTTTGATGCCAATGAGAACGTATACGAAGCTGCATCCAAGATTGTTGGAGTCAGGATTCAAAATGTTGTTGACCTTGAAATAGCTGCCCTTCTTGATGACGATGATTTATTGCGGTTTGGTTCTGATGTGACGATGATTTATTGCGATTTGGTTCTGATGTGA

Protein sequence

MFEECFNWFDGTHTHMYMLIYSLLHIAMELLPPIVFLFGSSMQSRGEAGGTSSPENVRREILELEFPDDGYNYLLYLRAYDASRMIVSKVNFDANENVYEAASKIVGVRIQNVVDLEIAALLDDDDLLRFGSDVTMIYCDLVLM

Homology

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BLAST of MELO3C014949 vs. NCBI nr
Match: KAA0060375.1 (protein LTV1-like protein [Cucumis melo var. makuwa] >TYK22115.1 protein LTV1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 183.3 bits (464), Expect = 1.4e-42
Identity = 99/130 (76.15%), Postives = 101/130 (77.69%), Query Frame = 0


Query: 42  MQSRGEAGGTSSPENVRREILELEFPDDGYNYLLYLR----------------------- 101
           MQSRGE GGTSSPENVRREILELEFPDDGYNYLLYLR                       
Sbjct: 1   MQSRGEVGGTSSPENVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVP 60

Query: 102 ----AYDASRMIVSKVNFDANENVYEAASKIVGVRIQNVVDLEIAALLDDDDLLRFGSDV 145
               AYDASRMIVSKVNFDANENVYEA SKIVGVR+QNVVDLEIAALL+DDDLLRFGSDV
Sbjct: 61  LDEKAYDASRMIVSKVNFDANENVYEAVSKIVGVRVQNVVDLEIAALLNDDDLLRFGSDV 120

[Close]

BLAST of MELO3C014949 vs. NCBI nr
Match: XP_008448616.1 (PREDICTED: protein LTV1 homolog [Cucumis melo] >KAA0053005.1 protein LTV1-like protein [Cucumis melo var. makuwa] >TYK11461.1 protein LTV1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 151.4 bits (381), Expect = 6.1e-33
Identity = 86/134 (64.18%), Postives = 95/134 (70.90%), Query Frame = 0


Query: 38  FGSSMQSRGEAGGTSS-PENVRREILELEFPDDGYNYLLYLR------------------ 97
           FGSSMQSRGE GGTSS PENVRREILEL FPDDGYNYLL+LR                  
Sbjct: 86  FGSSMQSRGEVGGTSSLPENVRREILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAK 145

Query: 98  ---------AYDASRMIVSKVNFDANENVYEAASKIVGVRIQNVVDLEIAALLDDDDLLR 144
                    AYDASRM+VSK+N DA+ENVY+ ASKIVG+R+QNVVD EIAALLDDDDL R
Sbjct: 146 LNQVPRDEKAYDASRMVVSKMNVDADENVYKVASKIVGIRVQNVVDPEIAALLDDDDLSR 205

[Close]

BLAST of MELO3C014949 vs. NCBI nr
Match: XP_011650323.1 (protein LTV1 homolog [Cucumis sativus] >KGN55707.1 hypothetical protein Csa_009930 [Cucumis sativus])

HSP 1 Score: 142.5 bits (358), Expect = 2.8e-30
Identity = 82/134 (61.19%), Postives = 92/134 (68.66%), Query Frame = 0


Query: 38  FGSSMQSRGEAGGTSS-PENVRREILELEFPDDGYNYLLYLR------------------ 97
           FGSSMQ  G+ GGTSS PENVR++ILEL FPDDGYNYLL+LR                  
Sbjct: 86  FGSSMQFSGDVGGTSSLPENVRKDILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAK 145

Query: 98  ---------AYDASRMIVSKVNFDANENVYEAASKIVGVRIQNVVDLEIAALLDDDDLLR 144
                    AYDASRMIVSK+N DA+EN Y+ ASKIVGVR+QNVVD EIAALLDDDDL R
Sbjct: 146 LNQVPRDEKAYDASRMIVSKMNVDADENAYKVASKIVGVRVQNVVDPEIAALLDDDDLSR 205

[Close]

BLAST of MELO3C014949 vs. NCBI nr
Match: XP_038898842.1 (protein LTV1 homolog [Benincasa hispida])

HSP 1 Score: 131.3 bits (329), Expect = 6.5e-27
Identity = 77/134 (57.46%), Postives = 88/134 (65.67%), Query Frame = 0


Query: 38  FGSSMQSRGEAGGTSS-PENVRREILELEFPDDGYNYLLYLR------------------ 97
           FG S++ R E GGT+  PENVRREILEL FPDDGYNYLL+LR                  
Sbjct: 86  FGPSLRLREEVGGTAPLPENVRREILELGFPDDGYNYLLHLREIKNTGGGSAFYQNPKAK 145

Query: 98  ---------AYDASRMIVSKVNFDANENVYEAASKIVGVRIQNVVDLEIAALLDDDDLLR 144
                    AYDASR+IVSK N DA+ N+Y+ ASK VGVR+QNVVD EIAALLDDDDL R
Sbjct: 146 LNQVPRDEKAYDASRVIVSKGNIDADGNIYKVASKTVGVRVQNVVDPEIAALLDDDDLSR 205

[Close]

BLAST of MELO3C014949 vs. NCBI nr
Match: KAA0032612.1 (protein LTV1-like protein [Cucumis melo var. makuwa] >TYK20874.1 protein LTV1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 125.6 bits (314), Expect = 3.6e-25
Identity = 70/102 (68.63%), Postives = 72/102 (70.59%), Query Frame = 0


Query: 41  SMQSRGEAGGTSSPENVRREILELEFPDDGYNYLLYLR---------------------- 100
           SMQSRGE GGTSS +NVRREILELEFPDDGYNYLLYLR                      
Sbjct: 6   SMQSRGEVGGTSSLKNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHV 65

Query: 101 -----AYDASRMIVSKVNFDANENVYEAASKIVGVRIQNVVD 116
                AYDASRMIVSKVNFDAN NVYEAASKIVGVR+QNVVD
Sbjct: 66  PLDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNVVD 107

[Close]

BLAST of MELO3C014949 vs. ExPASy TrEMBL
Match: A0A5A7V3C9 (Protein LTV1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G001120 PE=3 SV=1)

HSP 1 Score: 183.3 bits (464), Expect = 7.0e-43
Identity = 99/130 (76.15%), Postives = 101/130 (77.69%), Query Frame = 0


Query: 42  MQSRGEAGGTSSPENVRREILELEFPDDGYNYLLYLR----------------------- 101
           MQSRGE GGTSSPENVRREILELEFPDDGYNYLLYLR                       
Sbjct: 1   MQSRGEVGGTSSPENVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHVP 60

Query: 102 ----AYDASRMIVSKVNFDANENVYEAASKIVGVRIQNVVDLEIAALLDDDDLLRFGSDV 145
               AYDASRMIVSKVNFDANENVYEA SKIVGVR+QNVVDLEIAALL+DDDLLRFGSDV
Sbjct: 61  LDEKAYDASRMIVSKVNFDANENVYEAVSKIVGVRVQNVVDLEIAALLNDDDLLRFGSDV 120

[Close]

BLAST of MELO3C014949 vs. ExPASy TrEMBL
Match: A0A5D3CI19 (Protein LTV1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G001180 PE=3 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.9e-33
Identity = 86/134 (64.18%), Postives = 95/134 (70.90%), Query Frame = 0


Query: 38  FGSSMQSRGEAGGTSS-PENVRREILELEFPDDGYNYLLYLR------------------ 97
           FGSSMQSRGE GGTSS PENVRREILEL FPDDGYNYLL+LR                  
Sbjct: 86  FGSSMQSRGEVGGTSSLPENVRREILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAK 145

Query: 98  ---------AYDASRMIVSKVNFDANENVYEAASKIVGVRIQNVVDLEIAALLDDDDLLR 144
                    AYDASRM+VSK+N DA+ENVY+ ASKIVG+R+QNVVD EIAALLDDDDL R
Sbjct: 146 LNQVPRDEKAYDASRMVVSKMNVDADENVYKVASKIVGIRVQNVVDPEIAALLDDDDLSR 205

[Close]

BLAST of MELO3C014949 vs. ExPASy TrEMBL
Match: A0A1S3BKZ8 (protein LTV1 homolog OS=Cucumis melo OX=3656 GN=LOC103490738 PE=3 SV=1)

HSP 1 Score: 151.4 bits (381), Expect = 2.9e-33
Identity = 86/134 (64.18%), Postives = 95/134 (70.90%), Query Frame = 0


Query: 38  FGSSMQSRGEAGGTSS-PENVRREILELEFPDDGYNYLLYLR------------------ 97
           FGSSMQSRGE GGTSS PENVRREILEL FPDDGYNYLL+LR                  
Sbjct: 86  FGSSMQSRGEVGGTSSLPENVRREILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAK 145

Query: 98  ---------AYDASRMIVSKVNFDANENVYEAASKIVGVRIQNVVDLEIAALLDDDDLLR 144
                    AYDASRM+VSK+N DA+ENVY+ ASKIVG+R+QNVVD EIAALLDDDDL R
Sbjct: 146 LNQVPRDEKAYDASRMVVSKMNVDADENVYKVASKIVGIRVQNVVDPEIAALLDDDDLSR 205

[Close]

BLAST of MELO3C014949 vs. ExPASy TrEMBL
Match: A0A0A0L517 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G006680 PE=3 SV=1)

HSP 1 Score: 142.5 bits (358), Expect = 1.4e-30
Identity = 82/134 (61.19%), Postives = 92/134 (68.66%), Query Frame = 0


Query: 38  FGSSMQSRGEAGGTSS-PENVRREILELEFPDDGYNYLLYLR------------------ 97
           FGSSMQ  G+ GGTSS PENVR++ILEL FPDDGYNYLL+LR                  
Sbjct: 86  FGSSMQFSGDVGGTSSLPENVRKDILELGFPDDGYNYLLHLREIKNTGGGSTFYQNPKAK 145

Query: 98  ---------AYDASRMIVSKVNFDANENVYEAASKIVGVRIQNVVDLEIAALLDDDDLLR 144
                    AYDASRMIVSK+N DA+EN Y+ ASKIVGVR+QNVVD EIAALLDDDDL R
Sbjct: 146 LNQVPRDEKAYDASRMIVSKMNVDADENAYKVASKIVGVRVQNVVDPEIAALLDDDDLSR 205

[Close]

BLAST of MELO3C014949 vs. ExPASy TrEMBL
Match: A0A5A7SNI8 (Protein LTV1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold284G00010 PE=3 SV=1)

HSP 1 Score: 125.6 bits (314), Expect = 1.7e-25
Identity = 70/102 (68.63%), Postives = 72/102 (70.59%), Query Frame = 0


Query: 41  SMQSRGEAGGTSSPENVRREILELEFPDDGYNYLLYLR---------------------- 100
           SMQSRGE GGTSS +NVRREILELEFPDDGYNYLLYLR                      
Sbjct: 6   SMQSRGEVGGTSSLKNVRREILELEFPDDGYNYLLYLRVIRNTGNGSTSYQNPKAKLNHV 65

Query: 101 -----AYDASRMIVSKVNFDANENVYEAASKIVGVRIQNVVD 116
                AYDASRMIVSKVNFDAN NVYEAASKIVGVR+QNVVD
Sbjct: 66  PLDEKAYDASRMIVSKVNFDANVNVYEAASKIVGVRVQNVVD 107

[Close]

BLAST of MELO3C014949 vs. TAIR 10
Match: AT3G49990.1 (unknown protein; Has 1524 Blast hits to 1298 proteins in 225 species: Archae - 9; Bacteria - 84; Metazoa - 474; Fungi - 184; Plants - 98; Viruses - 17; Other Eukaryotes - 658 (source: NCBI BLink). )

HSP 1 Score: 79.0 bits (193), Expect = 3.6e-15
Identity = 51/123 (41.46%), Postives = 69/123 (56.10%), Query Frame = 0


Query: 51  TSSPENVRREILELEFPDDGYNYLLYLR---------------------------AYDAS 110
           +S P +VR+EILEL +PDDGYNYL +LR                           AYDAS
Sbjct: 83  SSLPAHVRKEILELGYPDDGYNYLEHLREIKNTGGGSNFYVNPKYEVAQLPRDVKAYDAS 142

Query: 111 RMIVS-KVNFDANEN--VYEAASKIVGVRIQNVVDLEIAALLDDDDLLRFGSDVTMIYCD 144
           R+ +S  VN + N+N  +Y  ASK V V++Q  +D E+AALL++ D   FGSDV  +  D
Sbjct: 143 RVKISGMVNEEGNDNKLMYSVASKTVNVKVQKAIDPEVAALLENSDGSEFGSDVEDLEED 202

The following BLAST results are available for this feature:

BLAST of MELO3C014949 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0060375.1	1.4e-42	76.15	protein LTV1-like protein [Cucumis melo var. makuwa] >TYK22115.1 protein LTV1-li...	[more]
XP_008448616.1	6.1e-33	64.18	PREDICTED: protein LTV1 homolog [Cucumis melo] >KAA0053005.1 protein LTV1-like p...	[more]
XP_011650323.1	2.8e-30	61.19	protein LTV1 homolog [Cucumis sativus] >KGN55707.1 hypothetical protein Csa_0099...	[more]
XP_038898842.1	6.5e-27	57.46	protein LTV1 homolog [Benincasa hispida]	[more]
KAA0032612.1	3.6e-25	68.63	protein LTV1-like protein [Cucumis melo var. makuwa] >TYK20874.1 protein LTV1-li...	[more]

BLAST of MELO3C014949 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C014949 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V3C9	7.0e-43	76.15	Protein LTV1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A5D3CI19	2.9e-33	64.18	Protein LTV1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]
A0A1S3BKZ8	2.9e-33	64.18	protein LTV1 homolog OS=Cucumis melo OX=3656 GN=LOC103490738 PE=3 SV=1	[more]
A0A0A0L517	1.4e-30	61.19	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G006680 PE=3 SV=1	[more]
A0A5A7SNI8	1.7e-25	68.63	Protein LTV1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffo...	[more]

BLAST of MELO3C014949 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G49990.1	3.6e-15	41.46	unknown protein; Has 1524 Blast hits to 1298 proteins in 225 species: Archae - 9...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR007307	Low temperature viability protein Ltv1	PANTHER	PTHR21531	LOW-TEMPERATURE VIABILITY PROTEIN LTV1-RELATED	coord: 47..134

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C014949.1	MELO3C014949.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0042274	ribosomal small subunit biogenesis