MELO3C014919 (gene) Melon (DHL92) v4

Overview
NameMELO3C014919
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Locationchr06: 20107178 .. 20107591 (-)
RNA-Seq ExpressionMELO3C014919
SyntenyMELO3C014919
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTGATGGAAACGATATGGAGATCCACACCATGTACAACCATGGGTTTAACATGTCCCAGGATGATGTAAGCACCTTACGACCTGGTTGTGCGTTCAACGATAGGACCAGATCGAATGGATCAAAGCGAAAGAGGGGAGGGCAGCGGGTGGGGGAGATTGAGCTAATTCATGAGGTGATGGAGTATGTGAATGACCAGCTGAGGGCCATTGTCGAGTGGCCTATTGTCATGCTTCATAATGAGACCACAGTTCGCCAGGAAATCCTTCGCAAGTTGCGTGCGATGCTCGAACTAAGTAGGTTGGATAGGGCGAGCTGCTCATGGAGCCTCTTTCACAGTTTAGACGACATGCGCAGTTCCTTGAGAATGACTAATGAGGAGAAGATGGAATTCTGCACGATCCTGCTATGA

mRNA sequence

ATGCCTGATGGAAACGATATGGAGATCCACACCATGTACAACCATGGGTTTAACATGTCCCAGGATGATGTAAGCACCTTACGACCTGGTTGTGCGTTCAACGATAGGACCAGATCGAATGGATCAAAGCGAAAGAGGGGAGGGCAGCGGGTGGGGGAGATTGAGCTAATTCATGAGGTGATGGAGTATGTGAATGACCAGCTGAGGGCCATTGTCGAGTGGCCTATTGTCATGCTTCATAATGAGACCACAGTTCGCCAGGAAATCCTTCGCAAGTTGCGTGCGATGCTCGAACTAAGTAGGTTGGATAGGGCGAGCTGCTCATGGAGCCTCTTTCACAGTTTAGACGACATGCGCAGTTCCTTGAGAATGACTAATGAGGAGAAGATGGAATTCTGCACGATCCTGCTATGA

Coding sequence (CDS)

ATGCCTGATGGAAACGATATGGAGATCCACACCATGTACAACCATGGGTTTAACATGTCCCAGGATGATGTAAGCACCTTACGACCTGGTTGTGCGTTCAACGATAGGACCAGATCGAATGGATCAAAGCGAAAGAGGGGAGGGCAGCGGGTGGGGGAGATTGAGCTAATTCATGAGGTGATGGAGTATGTGAATGACCAGCTGAGGGCCATTGTCGAGTGGCCTATTGTCATGCTTCATAATGAGACCACAGTTCGCCAGGAAATCCTTCGCAAGTTGCGTGCGATGCTCGAACTAAGTAGGTTGGATAGGGCGAGCTGCTCATGGAGCCTCTTTCACAGTTTAGACGACATGCGCAGTTCCTTGAGAATGACTAATGAGGAGAAGATGGAATTCTGCACGATCCTGCTATGA

Protein sequence

MPDGNDMEIHTMYNHGFNMSQDDVSTLRPGCAFNDRTRSNGSKRKRGGQRVGEIELIHEVMEYVNDQLRAIVEWPIVMLHNETTVRQEILRKLRAMLELSRLDRASCSWSLFHSLDDMRSSLRMTNEEKMEFCTILL
Homology
BLAST of MELO3C014919 vs. NCBI nr
Match: KAA0060299.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22049.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 264.2 bits (674), Expect = 6.1e-67
Identity = 131/137 (95.62%), Postives = 134/137 (97.81%), Query Frame = 0

Query: 1   MPDGNDMEIHTMYNHGFNMSQDDVSTLRPGCAFNDRTRSNGSKRKRGGQRVGEIELIHEV 60
           MPDGNDMEIHTMYNHGFNMSQDDVST RPGCAFNDRT S+GSKRKRGGQRVGEIELIHEV
Sbjct: 1   MPDGNDMEIHTMYNHGFNMSQDDVSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEV 60

Query: 61  MEYVNDQLRAIVEWPIVMLHNETTVRQEILRKLRAMLELSRLDRASCSWSLFHSLDDMRS 120
           MEYVNDQLRAIVEWPIVMLHNETTVRQE+LRKLRAMLELSRLDRASCSWSLFHSLD+M S
Sbjct: 61  MEYVNDQLRAIVEWPIVMLHNETTVRQEVLRKLRAMLELSRLDRASCSWSLFHSLDNMCS 120

Query: 121 SLRMTNEEKMEFCTILL 138
           SLRMTNEEKMEFCTILL
Sbjct: 121 SLRMTNEEKMEFCTILL 137

BLAST of MELO3C014919 vs. NCBI nr
Match: KAA0033884.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK01268.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 136.7 bits (343), Expect = 1.5e-28
Identity = 71/137 (51.82%), Postives = 92/137 (67.15%), Query Frame = 0

Query: 1   MPDGNDMEIHTMYNHGFNMSQDDVSTLRPGCAFNDRTRSNGSKRKRGGQRVGEIELIHEV 60
           M DGND+E   MY+ G ++SQDDV T +P C  + R RS+ SKRKRG QR GE+++I+  
Sbjct: 231 MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMA 290

Query: 61  MEYVNDQLRAIVEWPIVMLHNETTVRQEILRKLRAMLELSRLDRASCSWSLFHSLDDMRS 120
           ++ +NDQLR I+EWP     NET VRQE LR L  M +LS LDR  C   L  S+DDMRS
Sbjct: 291 LKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLSSLDRELCQRQLMCSIDDMRS 350

Query: 121 SLRMTNEEKMEFCTILL 138
            + MT+EE+  FC + L
Sbjct: 351 FVEMTDEERKNFCRVFL 367

BLAST of MELO3C014919 vs. NCBI nr
Match: KAA0050190.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ98219.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 127.5 bits (319), Expect = 8.9e-26
Identity = 69/137 (50.36%), Postives = 88/137 (64.23%), Query Frame = 0

Query: 1   MPDGNDMEIHTMYNHGFNMSQDDVSTLRPGCAFNDRTRSNGSKRKRGGQRVGEIELIHEV 60
           M DGN+ E  +MY+ G +MSQ+DV   RP      R RS+GSKRKR  Q+ GEIE+IH  
Sbjct: 79  MLDGNE-EFPSMYSQGIDMSQEDVRASRPSHTSKGRIRSSGSKRKRESQQKGEIEVIHMA 138

Query: 61  MEYVNDQLRAIVEWPIVMLHNETTVRQEILRKLRAMLELSRLDRASCSWSLFHSLDDMRS 120
           +E  NDQLR I EWP   L N+T VRQE+LR L  M EL+ LDR  C   L   +DDMR 
Sbjct: 139 IECTNDQLRTIAEWPARALANDTHVRQELLRLLHVMPELTSLDRVLCQRHLLSRMDDMRG 198

Query: 121 SLRMTNEEKMEFCTILL 138
            ++M ++E+  FC +LL
Sbjct: 199 FIQMIDDERQNFCRVLL 214

BLAST of MELO3C014919 vs. NCBI nr
Match: XP_031744343.1 (uncharacterized protein LOC116404989 [Cucumis sativus] >XP_031744344.1 uncharacterized protein LOC116404989 [Cucumis sativus])

HSP 1 Score: 126.3 bits (316), Expect = 2.0e-25
Identity = 65/135 (48.15%), Postives = 95/135 (70.37%), Query Frame = 0

Query: 3   DGNDMEIHTMYNHGFNMSQDDVSTLRPGCAFNDRTRSNGSKRKRGGQRVGEIELIHEVME 62
           D NDME  +M +H FNMSQDD++  RP    + RT S+GSKR+RGGQ +   ++I + M 
Sbjct: 117 DLNDMEFPSMSSHRFNMSQDDIA--RPSRGTDSRTTSSGSKRRRGGQTLETADVIKDAMA 176

Query: 63  YVNDQLRAIVEWPIVMLHNETTVRQEILRKLRAMLELSRLDRASCSWSLFHSLDDMRSSL 122
              D+LR I EWP + L +E+ VR+E++R LRA+ ELSRLD A C+  L ++L DM+  L
Sbjct: 177 LQTDELRLIAEWPRLALEDESRVRREVVRALRAIPELSRLDMAQCNRILMNNLTDMKGFL 236

Query: 123 RMTNEEKMEFCTILL 138
            ++NEEK+++CT+L+
Sbjct: 237 ELSNEEKLDYCTVLI 249

BLAST of MELO3C014919 vs. NCBI nr
Match: KAA0056139.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 122.5 bits (306), Expect = 2.9e-24
Identity = 73/141 (51.77%), Postives = 91/141 (64.54%), Query Frame = 0

Query: 3   DGNDMEIHTMYNHGFNMSQ------DDVSTLRPGCAFNDRTRSNGSKRKRGGQRVGEIEL 62
           D ND+EI TMYN GFNMS+      D V     G   +D++      +K GGQRV  ++L
Sbjct: 92  DRNDIEIPTMYNQGFNMSRRIYGPHDLVEHPMVGLDQSDQS------KKGGGQRVEHVDL 151

Query: 63  IHEVMEYVNDQLRAIVEWPIVMLHNETTVRQEILRKLRAMLELSRLDRASCSWSLFHSLD 122
           IH+ M+  NDQLR IVEW  V L NETTV QE+L +L A+ ELSRLDR   S  LF +LD
Sbjct: 152 IHKAMKCANDQLRVIVEWTSVALQNETTVHQEVLCQLHAIPELSRLDRVHYSRILFCNLD 211

Query: 123 DMRSSLRMTNEEKMEFCTILL 138
           DMR  L +  +EKM+FCT+LL
Sbjct: 212 DMRGFLEILEDEKMDFCTVLL 226

BLAST of MELO3C014919 vs. ExPASy TrEMBL
Match: A0A5A7V3G0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G00270 PE=4 SV=1)

HSP 1 Score: 264.2 bits (674), Expect = 3.0e-67
Identity = 131/137 (95.62%), Postives = 134/137 (97.81%), Query Frame = 0

Query: 1   MPDGNDMEIHTMYNHGFNMSQDDVSTLRPGCAFNDRTRSNGSKRKRGGQRVGEIELIHEV 60
           MPDGNDMEIHTMYNHGFNMSQDDVST RPGCAFNDRT S+GSKRKRGGQRVGEIELIHEV
Sbjct: 1   MPDGNDMEIHTMYNHGFNMSQDDVSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEV 60

Query: 61  MEYVNDQLRAIVEWPIVMLHNETTVRQEILRKLRAMLELSRLDRASCSWSLFHSLDDMRS 120
           MEYVNDQLRAIVEWPIVMLHNETTVRQE+LRKLRAMLELSRLDRASCSWSLFHSLD+M S
Sbjct: 61  MEYVNDQLRAIVEWPIVMLHNETTVRQEVLRKLRAMLELSRLDRASCSWSLFHSLDNMCS 120

Query: 121 SLRMTNEEKMEFCTILL 138
           SLRMTNEEKMEFCTILL
Sbjct: 121 SLRMTNEEKMEFCTILL 137

BLAST of MELO3C014919 vs. ExPASy TrEMBL
Match: A0A5D3BQI7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00550 PE=3 SV=1)

HSP 1 Score: 136.7 bits (343), Expect = 7.1e-29
Identity = 71/137 (51.82%), Postives = 92/137 (67.15%), Query Frame = 0

Query: 1   MPDGNDMEIHTMYNHGFNMSQDDVSTLRPGCAFNDRTRSNGSKRKRGGQRVGEIELIHEV 60
           M DGND+E   MY+ G ++SQDDV T +P C  + R RS+ SKRKRG QR GE+++I+  
Sbjct: 231 MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMA 290

Query: 61  MEYVNDQLRAIVEWPIVMLHNETTVRQEILRKLRAMLELSRLDRASCSWSLFHSLDDMRS 120
           ++ +NDQLR I+EWP     NET VRQE LR L  M +LS LDR  C   L  S+DDMRS
Sbjct: 291 LKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLSSLDRELCQRQLMCSIDDMRS 350

Query: 121 SLRMTNEEKMEFCTILL 138
            + MT+EE+  FC + L
Sbjct: 351 FVEMTDEERKNFCRVFL 367

BLAST of MELO3C014919 vs. ExPASy TrEMBL
Match: A0A5A7U4I8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G001180 PE=4 SV=1)

HSP 1 Score: 127.5 bits (319), Expect = 4.3e-26
Identity = 69/137 (50.36%), Postives = 88/137 (64.23%), Query Frame = 0

Query: 1   MPDGNDMEIHTMYNHGFNMSQDDVSTLRPGCAFNDRTRSNGSKRKRGGQRVGEIELIHEV 60
           M DGN+ E  +MY+ G +MSQ+DV   RP      R RS+GSKRKR  Q+ GEIE+IH  
Sbjct: 79  MLDGNE-EFPSMYSQGIDMSQEDVRASRPSHTSKGRIRSSGSKRKRESQQKGEIEVIHMA 138

Query: 61  MEYVNDQLRAIVEWPIVMLHNETTVRQEILRKLRAMLELSRLDRASCSWSLFHSLDDMRS 120
           +E  NDQLR I EWP   L N+T VRQE+LR L  M EL+ LDR  C   L   +DDMR 
Sbjct: 139 IECTNDQLRTIAEWPARALANDTHVRQELLRLLHVMPELTSLDRVLCQRHLLSRMDDMRG 198

Query: 121 SLRMTNEEKMEFCTILL 138
            ++M ++E+  FC +LL
Sbjct: 199 FIQMIDDERQNFCRVLL 214

BLAST of MELO3C014919 vs. ExPASy TrEMBL
Match: A0A5A7URM1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold697G00200 PE=4 SV=1)

HSP 1 Score: 122.5 bits (306), Expect = 1.4e-24
Identity = 73/141 (51.77%), Postives = 91/141 (64.54%), Query Frame = 0

Query: 3   DGNDMEIHTMYNHGFNMSQ------DDVSTLRPGCAFNDRTRSNGSKRKRGGQRVGEIEL 62
           D ND+EI TMYN GFNMS+      D V     G   +D++      +K GGQRV  ++L
Sbjct: 92  DRNDIEIPTMYNQGFNMSRRIYGPHDLVEHPMVGLDQSDQS------KKGGGQRVEHVDL 151

Query: 63  IHEVMEYVNDQLRAIVEWPIVMLHNETTVRQEILRKLRAMLELSRLDRASCSWSLFHSLD 122
           IH+ M+  NDQLR IVEW  V L NETTV QE+L +L A+ ELSRLDR   S  LF +LD
Sbjct: 152 IHKAMKCANDQLRVIVEWTSVALQNETTVHQEVLCQLHAIPELSRLDRVHYSRILFCNLD 211

Query: 123 DMRSSLRMTNEEKMEFCTILL 138
           DMR  L +  +EKM+FCT+LL
Sbjct: 212 DMRGFLEILEDEKMDFCTVLL 226

BLAST of MELO3C014919 vs. ExPASy TrEMBL
Match: A0A5A7U9D5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold323G00780 PE=4 SV=1)

HSP 1 Score: 122.1 bits (305), Expect = 1.8e-24
Identity = 66/137 (48.18%), Postives = 88/137 (64.23%), Query Frame = 0

Query: 1   MPDGNDMEIHTMYNHGFNMSQDDVSTLRPGCAFNDRTRSNGSKRKRGGQRVGEIELIHEV 60
           M DGN+ E  ++Y+ G +MSQ+DV   +P    N R RS+  KRKRG Q+ GEI++IH  
Sbjct: 54  MSDGNE-EFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMA 113

Query: 61  MEYVNDQLRAIVEWPIVMLHNETTVRQEILRKLRAMLELSRLDRASCSWSLFHSLDDMRS 120
           ++ +NDQL+ IVEW    L N T V QE +R LR M ELS LDRA C   L   +DDM  
Sbjct: 114 LKCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSNLDRALCQRHLMSHMDDMWG 173

Query: 121 SLRMTNEEKMEFCTILL 138
            ++MTN+E+  FC +LL
Sbjct: 174 FVQMTNDERQNFCRVLL 189

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0060299.16.1e-6795.62retrotransposon protein [Cucumis melo var. makuwa] >TYK22049.1 retrotransposon p... [more]
KAA0033884.11.5e-2851.82retrotransposon protein [Cucumis melo var. makuwa] >TYK01268.1 retrotransposon p... [more]
KAA0050190.18.9e-2650.36retrotransposon protein [Cucumis melo var. makuwa] >TYJ98219.1 retrotransposon p... [more]
XP_031744343.12.0e-2548.15uncharacterized protein LOC116404989 [Cucumis sativus] >XP_031744344.1 uncharact... [more]
KAA0056139.12.9e-2451.77retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V3G03.0e-6795.62Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BQI77.1e-2951.82Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U4I84.3e-2650.36Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7URM11.4e-2451.77Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7U9D51.8e-2448.18Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C014919.1MELO3C014919.1mRNA