Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTGATGGAAACGATATGGAGATCCACACCATGTACAACCATGGGTTTAACATGTCCCAGGATGATGTAAGCACCTTACGACCTGGTTGTGCGTTCAACGATAGGACCAGATCGAATGGATCAAAGCGAAAGAGGGGAGGGCAGCGGGTGGGGGAGATTGAGCTAATTCATGAGGTGATGGAGTATGTGAATGACCAGCTGAGGGCCATTGTCGAGTGGCCTATTGTCATGCTTCATAATGAGACCACAGTTCGCCAGGAAATCCTTCGCAAGTTGCGTGCGATGCTCGAACTAAGTAGGTTGGATAGGGCGAGCTGCTCATGGAGCCTCTTTCACAGTTTAGACGACATGCGCAGTTCCTTGAGAATGACTAATGAGGAGAAGATGGAATTCTGCACGATCCTGCTATGA
mRNA sequence
ATGCCTGATGGAAACGATATGGAGATCCACACCATGTACAACCATGGGTTTAACATGTCCCAGGATGATGTAAGCACCTTACGACCTGGTTGTGCGTTCAACGATAGGACCAGATCGAATGGATCAAAGCGAAAGAGGGGAGGGCAGCGGGTGGGGGAGATTGAGCTAATTCATGAGGTGATGGAGTATGTGAATGACCAGCTGAGGGCCATTGTCGAGTGGCCTATTGTCATGCTTCATAATGAGACCACAGTTCGCCAGGAAATCCTTCGCAAGTTGCGTGCGATGCTCGAACTAAGTAGGTTGGATAGGGCGAGCTGCTCATGGAGCCTCTTTCACAGTTTAGACGACATGCGCAGTTCCTTGAGAATGACTAATGAGGAGAAGATGGAATTCTGCACGATCCTGCTATGA
Coding sequence (CDS)
ATGCCTGATGGAAACGATATGGAGATCCACACCATGTACAACCATGGGTTTAACATGTCCCAGGATGATGTAAGCACCTTACGACCTGGTTGTGCGTTCAACGATAGGACCAGATCGAATGGATCAAAGCGAAAGAGGGGAGGGCAGCGGGTGGGGGAGATTGAGCTAATTCATGAGGTGATGGAGTATGTGAATGACCAGCTGAGGGCCATTGTCGAGTGGCCTATTGTCATGCTTCATAATGAGACCACAGTTCGCCAGGAAATCCTTCGCAAGTTGCGTGCGATGCTCGAACTAAGTAGGTTGGATAGGGCGAGCTGCTCATGGAGCCTCTTTCACAGTTTAGACGACATGCGCAGTTCCTTGAGAATGACTAATGAGGAGAAGATGGAATTCTGCACGATCCTGCTATGA
Protein sequence
MPDGNDMEIHTMYNHGFNMSQDDVSTLRPGCAFNDRTRSNGSKRKRGGQRVGEIELIHEVMEYVNDQLRAIVEWPIVMLHNETTVRQEILRKLRAMLELSRLDRASCSWSLFHSLDDMRSSLRMTNEEKMEFCTILL
Homology
BLAST of MELO3C014919 vs. NCBI nr
Match:
KAA0060299.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22049.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 264.2 bits (674), Expect = 6.1e-67
Identity = 131/137 (95.62%), Postives = 134/137 (97.81%), Query Frame = 0
Query: 1 MPDGNDMEIHTMYNHGFNMSQDDVSTLRPGCAFNDRTRSNGSKRKRGGQRVGEIELIHEV 60
MPDGNDMEIHTMYNHGFNMSQDDVST RPGCAFNDRT S+GSKRKRGGQRVGEIELIHEV
Sbjct: 1 MPDGNDMEIHTMYNHGFNMSQDDVSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEV 60
Query: 61 MEYVNDQLRAIVEWPIVMLHNETTVRQEILRKLRAMLELSRLDRASCSWSLFHSLDDMRS 120
MEYVNDQLRAIVEWPIVMLHNETTVRQE+LRKLRAMLELSRLDRASCSWSLFHSLD+M S
Sbjct: 61 MEYVNDQLRAIVEWPIVMLHNETTVRQEVLRKLRAMLELSRLDRASCSWSLFHSLDNMCS 120
Query: 121 SLRMTNEEKMEFCTILL 138
SLRMTNEEKMEFCTILL
Sbjct: 121 SLRMTNEEKMEFCTILL 137
BLAST of MELO3C014919 vs. NCBI nr
Match:
KAA0033884.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK01268.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 136.7 bits (343), Expect = 1.5e-28
Identity = 71/137 (51.82%), Postives = 92/137 (67.15%), Query Frame = 0
Query: 1 MPDGNDMEIHTMYNHGFNMSQDDVSTLRPGCAFNDRTRSNGSKRKRGGQRVGEIELIHEV 60
M DGND+E MY+ G ++SQDDV T +P C + R RS+ SKRKRG QR GE+++I+
Sbjct: 231 MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMA 290
Query: 61 MEYVNDQLRAIVEWPIVMLHNETTVRQEILRKLRAMLELSRLDRASCSWSLFHSLDDMRS 120
++ +NDQLR I+EWP NET VRQE LR L M +LS LDR C L S+DDMRS
Sbjct: 291 LKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLSSLDRELCQRQLMCSIDDMRS 350
Query: 121 SLRMTNEEKMEFCTILL 138
+ MT+EE+ FC + L
Sbjct: 351 FVEMTDEERKNFCRVFL 367
BLAST of MELO3C014919 vs. NCBI nr
Match:
KAA0050190.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ98219.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 127.5 bits (319), Expect = 8.9e-26
Identity = 69/137 (50.36%), Postives = 88/137 (64.23%), Query Frame = 0
Query: 1 MPDGNDMEIHTMYNHGFNMSQDDVSTLRPGCAFNDRTRSNGSKRKRGGQRVGEIELIHEV 60
M DGN+ E +MY+ G +MSQ+DV RP R RS+GSKRKR Q+ GEIE+IH
Sbjct: 79 MLDGNE-EFPSMYSQGIDMSQEDVRASRPSHTSKGRIRSSGSKRKRESQQKGEIEVIHMA 138
Query: 61 MEYVNDQLRAIVEWPIVMLHNETTVRQEILRKLRAMLELSRLDRASCSWSLFHSLDDMRS 120
+E NDQLR I EWP L N+T VRQE+LR L M EL+ LDR C L +DDMR
Sbjct: 139 IECTNDQLRTIAEWPARALANDTHVRQELLRLLHVMPELTSLDRVLCQRHLLSRMDDMRG 198
Query: 121 SLRMTNEEKMEFCTILL 138
++M ++E+ FC +LL
Sbjct: 199 FIQMIDDERQNFCRVLL 214
BLAST of MELO3C014919 vs. NCBI nr
Match:
XP_031744343.1 (uncharacterized protein LOC116404989 [Cucumis sativus] >XP_031744344.1 uncharacterized protein LOC116404989 [Cucumis sativus])
HSP 1 Score: 126.3 bits (316), Expect = 2.0e-25
Identity = 65/135 (48.15%), Postives = 95/135 (70.37%), Query Frame = 0
Query: 3 DGNDMEIHTMYNHGFNMSQDDVSTLRPGCAFNDRTRSNGSKRKRGGQRVGEIELIHEVME 62
D NDME +M +H FNMSQDD++ RP + RT S+GSKR+RGGQ + ++I + M
Sbjct: 117 DLNDMEFPSMSSHRFNMSQDDIA--RPSRGTDSRTTSSGSKRRRGGQTLETADVIKDAMA 176
Query: 63 YVNDQLRAIVEWPIVMLHNETTVRQEILRKLRAMLELSRLDRASCSWSLFHSLDDMRSSL 122
D+LR I EWP + L +E+ VR+E++R LRA+ ELSRLD A C+ L ++L DM+ L
Sbjct: 177 LQTDELRLIAEWPRLALEDESRVRREVVRALRAIPELSRLDMAQCNRILMNNLTDMKGFL 236
Query: 123 RMTNEEKMEFCTILL 138
++NEEK+++CT+L+
Sbjct: 237 ELSNEEKLDYCTVLI 249
BLAST of MELO3C014919 vs. NCBI nr
Match:
KAA0056139.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 122.5 bits (306), Expect = 2.9e-24
Identity = 73/141 (51.77%), Postives = 91/141 (64.54%), Query Frame = 0
Query: 3 DGNDMEIHTMYNHGFNMSQ------DDVSTLRPGCAFNDRTRSNGSKRKRGGQRVGEIEL 62
D ND+EI TMYN GFNMS+ D V G +D++ +K GGQRV ++L
Sbjct: 92 DRNDIEIPTMYNQGFNMSRRIYGPHDLVEHPMVGLDQSDQS------KKGGGQRVEHVDL 151
Query: 63 IHEVMEYVNDQLRAIVEWPIVMLHNETTVRQEILRKLRAMLELSRLDRASCSWSLFHSLD 122
IH+ M+ NDQLR IVEW V L NETTV QE+L +L A+ ELSRLDR S LF +LD
Sbjct: 152 IHKAMKCANDQLRVIVEWTSVALQNETTVHQEVLCQLHAIPELSRLDRVHYSRILFCNLD 211
Query: 123 DMRSSLRMTNEEKMEFCTILL 138
DMR L + +EKM+FCT+LL
Sbjct: 212 DMRGFLEILEDEKMDFCTVLL 226
BLAST of MELO3C014919 vs. ExPASy TrEMBL
Match:
A0A5A7V3G0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G00270 PE=4 SV=1)
HSP 1 Score: 264.2 bits (674), Expect = 3.0e-67
Identity = 131/137 (95.62%), Postives = 134/137 (97.81%), Query Frame = 0
Query: 1 MPDGNDMEIHTMYNHGFNMSQDDVSTLRPGCAFNDRTRSNGSKRKRGGQRVGEIELIHEV 60
MPDGNDMEIHTMYNHGFNMSQDDVST RPGCAFNDRT S+GSKRKRGGQRVGEIELIHEV
Sbjct: 1 MPDGNDMEIHTMYNHGFNMSQDDVSTSRPGCAFNDRTGSSGSKRKRGGQRVGEIELIHEV 60
Query: 61 MEYVNDQLRAIVEWPIVMLHNETTVRQEILRKLRAMLELSRLDRASCSWSLFHSLDDMRS 120
MEYVNDQLRAIVEWPIVMLHNETTVRQE+LRKLRAMLELSRLDRASCSWSLFHSLD+M S
Sbjct: 61 MEYVNDQLRAIVEWPIVMLHNETTVRQEVLRKLRAMLELSRLDRASCSWSLFHSLDNMCS 120
Query: 121 SLRMTNEEKMEFCTILL 138
SLRMTNEEKMEFCTILL
Sbjct: 121 SLRMTNEEKMEFCTILL 137
BLAST of MELO3C014919 vs. ExPASy TrEMBL
Match:
A0A5D3BQI7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00550 PE=3 SV=1)
HSP 1 Score: 136.7 bits (343), Expect = 7.1e-29
Identity = 71/137 (51.82%), Postives = 92/137 (67.15%), Query Frame = 0
Query: 1 MPDGNDMEIHTMYNHGFNMSQDDVSTLRPGCAFNDRTRSNGSKRKRGGQRVGEIELIHEV 60
M DGND+E MY+ G ++SQDDV T +P C + R RS+ SKRKRG QR GE+++I+
Sbjct: 231 MSDGNDIEFPFMYSQGIDISQDDVRTSQPACTSDGRIRSSESKRKRGSQREGELDVINMA 290
Query: 61 MEYVNDQLRAIVEWPIVMLHNETTVRQEILRKLRAMLELSRLDRASCSWSLFHSLDDMRS 120
++ +NDQLR I+EWP NET VRQE LR L M +LS LDR C L S+DDMRS
Sbjct: 291 LKCMNDQLRTIIEWPTRPFANETFVRQEFLRLLCEMPDLSSLDRELCQRQLMCSIDDMRS 350
Query: 121 SLRMTNEEKMEFCTILL 138
+ MT+EE+ FC + L
Sbjct: 351 FVEMTDEERKNFCRVFL 367
BLAST of MELO3C014919 vs. ExPASy TrEMBL
Match:
A0A5A7U4I8 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold180G001180 PE=4 SV=1)
HSP 1 Score: 127.5 bits (319), Expect = 4.3e-26
Identity = 69/137 (50.36%), Postives = 88/137 (64.23%), Query Frame = 0
Query: 1 MPDGNDMEIHTMYNHGFNMSQDDVSTLRPGCAFNDRTRSNGSKRKRGGQRVGEIELIHEV 60
M DGN+ E +MY+ G +MSQ+DV RP R RS+GSKRKR Q+ GEIE+IH
Sbjct: 79 MLDGNE-EFPSMYSQGIDMSQEDVRASRPSHTSKGRIRSSGSKRKRESQQKGEIEVIHMA 138
Query: 61 MEYVNDQLRAIVEWPIVMLHNETTVRQEILRKLRAMLELSRLDRASCSWSLFHSLDDMRS 120
+E NDQLR I EWP L N+T VRQE+LR L M EL+ LDR C L +DDMR
Sbjct: 139 IECTNDQLRTIAEWPARALANDTHVRQELLRLLHVMPELTSLDRVLCQRHLLSRMDDMRG 198
Query: 121 SLRMTNEEKMEFCTILL 138
++M ++E+ FC +LL
Sbjct: 199 FIQMIDDERQNFCRVLL 214
BLAST of MELO3C014919 vs. ExPASy TrEMBL
Match:
A0A5A7URM1 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold697G00200 PE=4 SV=1)
HSP 1 Score: 122.5 bits (306), Expect = 1.4e-24
Identity = 73/141 (51.77%), Postives = 91/141 (64.54%), Query Frame = 0
Query: 3 DGNDMEIHTMYNHGFNMSQ------DDVSTLRPGCAFNDRTRSNGSKRKRGGQRVGEIEL 62
D ND+EI TMYN GFNMS+ D V G +D++ +K GGQRV ++L
Sbjct: 92 DRNDIEIPTMYNQGFNMSRRIYGPHDLVEHPMVGLDQSDQS------KKGGGQRVEHVDL 151
Query: 63 IHEVMEYVNDQLRAIVEWPIVMLHNETTVRQEILRKLRAMLELSRLDRASCSWSLFHSLD 122
IH+ M+ NDQLR IVEW V L NETTV QE+L +L A+ ELSRLDR S LF +LD
Sbjct: 152 IHKAMKCANDQLRVIVEWTSVALQNETTVHQEVLCQLHAIPELSRLDRVHYSRILFCNLD 211
Query: 123 DMRSSLRMTNEEKMEFCTILL 138
DMR L + +EKM+FCT+LL
Sbjct: 212 DMRGFLEILEDEKMDFCTVLL 226
BLAST of MELO3C014919 vs. ExPASy TrEMBL
Match:
A0A5A7U9D5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold323G00780 PE=4 SV=1)
HSP 1 Score: 122.1 bits (305), Expect = 1.8e-24
Identity = 66/137 (48.18%), Postives = 88/137 (64.23%), Query Frame = 0
Query: 1 MPDGNDMEIHTMYNHGFNMSQDDVSTLRPGCAFNDRTRSNGSKRKRGGQRVGEIELIHEV 60
M DGN+ E ++Y+ G +MSQ+DV +P N R RS+ KRKRG Q+ GEI++IH
Sbjct: 54 MSDGNE-EFSSIYSQGIDMSQEDVHASQPAHTSNSRARSSRLKRKRGSQQKGEIKVIHMA 113
Query: 61 MEYVNDQLRAIVEWPIVMLHNETTVRQEILRKLRAMLELSRLDRASCSWSLFHSLDDMRS 120
++ +NDQL+ IVEW L N T V QE +R LR M ELS LDRA C L +DDM
Sbjct: 114 LKCMNDQLKKIVEWHARALANNTHVHQEFIRLLREMSELSNLDRALCQRHLMSHMDDMWG 173
Query: 121 SLRMTNEEKMEFCTILL 138
++MTN+E+ FC +LL
Sbjct: 174 FVQMTNDERQNFCRVLL 189
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0060299.1 | 6.1e-67 | 95.62 | retrotransposon protein [Cucumis melo var. makuwa] >TYK22049.1 retrotransposon p... | [more] |
KAA0033884.1 | 1.5e-28 | 51.82 | retrotransposon protein [Cucumis melo var. makuwa] >TYK01268.1 retrotransposon p... | [more] |
KAA0050190.1 | 8.9e-26 | 50.36 | retrotransposon protein [Cucumis melo var. makuwa] >TYJ98219.1 retrotransposon p... | [more] |
XP_031744343.1 | 2.0e-25 | 48.15 | uncharacterized protein LOC116404989 [Cucumis sativus] >XP_031744344.1 uncharact... | [more] |
KAA0056139.1 | 2.9e-24 | 51.77 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7V3G0 | 3.0e-67 | 95.62 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3BQI7 | 7.1e-29 | 51.82 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7U4I8 | 4.3e-26 | 50.36 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7URM1 | 1.4e-24 | 51.77 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5A7U9D5 | 1.8e-24 | 48.18 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
Match Name | E-value | Identity | Description | |