MELO3C014693 (gene) Melon (DHL92) v4

Overview
NameMELO3C014693
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionATP synthase epsilon chain, chloroplastic
Locationchr05: 348608 .. 348814 (+)
RNA-Seq ExpressionMELO3C014693
SyntenyMELO3C014693
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATGAATGGATGGTTAACGATGGCTCTGATCGGTGGTTTTGCTAGAATAGGCAATAATGAAGTCACTATTTTAGTAAATGATGCGGAGAAGGCTAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTCGAAATAGCGGAAGCCAACTTGAGGAAAGCTCAGGACAAGAGACAAACAATCGAGGCAAATTTAGCTCTCAGATGA

mRNA sequence

ATGATGAATGGATGGTTAACGATGGCTCTGATCGGTGGTTTTGCTAGAATAGGCAATAATGAAGTCACTATTTTAGTAAATGATGCGGAGAAGGCTAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTCGAAATAGCGGAAGCCAACTTGAGGAAAGCTCAGGACAAGAGACAAACAATCGAGGCAAATTTAGCTCTCAGATGA

Coding sequence (CDS)

ATGATGAATGGATGGTTAACGATGGCTCTGATCGGTGGTTTTGCTAGAATAGGCAATAATGAAGTCACTATTTTAGTAAATGATGCGGAGAAGGCTAGTGACATTGATCCACAAGAAGCTCAGCAAACTCTCGAAATAGCGGAAGCCAACTTGAGGAAAGCTCAGGACAAGAGACAAACAATCGAGGCAAATTTAGCTCTCAGATGA

Protein sequence

MMNGWLTMALIGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQDKRQTIEANLALR
Homology
[Close]
BLAST of MELO3C014693 vs. NCBI nr
Match: KAA0040079.1 (ATP synthase CF1 epsilon subunit [Cucumis melo var. makuwa] >TYK21703.1 ATP synthase CF1 epsilon subunit [Cucumis melo var. makuwa])

HSP 1 Score: 124.4 bits (311), Expect = 3.8e-25
Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 0 

Query: 1  MMNGWLTMALIGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQDKRQT 60
          MMNGWLTMAL+GGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI EANLRKAQ KRQT
Sbjct: 1  MMNGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIVEANLRKAQGKRQT 60

Query: 61 IEANLALR 69
          IEANLALR
Sbjct: 61 IEANLALR 68

[Close]
BLAST of MELO3C014693 vs. NCBI nr
Match: YP_009752081.1 (CF1 subunit epsilon [Dendrosicyos socotranus] >YP_009753095.1 CF1 subunit epsilon [Corallocarpus boehmii] >QIT05491.1 CF1 subunit epsilon [Dendrosicyos socotranus] >QIT06167.1 CF1 subunit epsilon [Corallocarpus boehmii])

HSP 1 Score: 120.2 bits (300), Expect = 7.1e-24
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 0 

Query: 3   NGWLTMALIGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQDKRQTIE 62
           +GWLTMAL+GGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQ KRQTIE
Sbjct: 57  DGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIE 116

Query: 63  ANLALR 69
           ANLALR
Sbjct: 117 ANLALR 122

[Close]
BLAST of MELO3C014693 vs. NCBI nr
Match: YP_009752418.1 (CF1 subunit epsilon [Trichosanthes tricuspidata] >YP_009753626.1 CF1 subunit epsilon [Trichosanthes wallichiana] >YP_009753711.1 CF1 subunit epsilon [Trichosanthes nervifolia] >QIT04645.1 CF1 subunit epsilon [Trichosanthes wallichiana] >QIT04814.1 CF1 subunit epsilon [Trichosanthes tricuspidata] >QIT05322.1 CF1 subunit epsilon [Trichosanthes nervifolia])

HSP 1 Score: 120.2 bits (300), Expect = 7.1e-24
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 0 

Query: 3   NGWLTMALIGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQDKRQTIE 62
           +GWLTMAL+GGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQ KRQTIE
Sbjct: 57  DGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIE 116

Query: 63  ANLALR 69
           ANLALR
Sbjct: 117 ANLALR 122

[Close]
BLAST of MELO3C014693 vs. NCBI nr
Match: ASY96329.1 (ATP synthase CF1 epsilon subunit [Cucumis melo subsp. agrestis])

HSP 1 Score: 120.2 bits (300), Expect = 7.1e-24
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 0 

Query: 3   NGWLTMALIGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQDKRQTIE 62
           +GWLTMAL+GGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQ KRQTIE
Sbjct: 57  DGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIE 116

Query: 63  ANLALR 69
           ANLALR
Sbjct: 117 ANLALR 122

[Close]
BLAST of MELO3C014693 vs. NCBI nr
Match: ALO22128.1 (AtpE [Cucurbita ficifolia] >QWV60846.1 ATP synthase CF1 epsilon subunit [Cucurbita ficifolia] >QZL38791.1 ATP synthase CF1 epsilon subunit [Cucurbita ficifolia])

HSP 1 Score: 120.2 bits (300), Expect = 7.1e-24
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 0 

Query: 3   NGWLTMALIGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQDKRQTIE 62
           +GWLTMAL+GGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQ KRQTIE
Sbjct: 59  DGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIE 118

Query: 63  ANLALR 69
           ANLALR
Sbjct: 119 ANLALR 124

[Close]
BLAST of MELO3C014693 vs. ExPASy Swiss-Prot
Match: Q4VZG9 (ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus OX=3659 GN=atpE PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 9.3e-27
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 0 

Query: 3   NGWLTMALIGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQDKRQTIE 62
           +GWLTMAL+GGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQ KRQTIE
Sbjct: 57  DGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIE 116

Query: 63  ANLALR 69
           ANLALR
Sbjct: 117 ANLALR 122

[Close]
BLAST of MELO3C014693 vs. ExPASy Swiss-Prot
Match: P09468 (ATP synthase epsilon chain, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=atpE PE=1 SV=2)

HSP 1 Score: 115.5 bits (288), Expect = 2.3e-25
Identity = 60/68 (88.24%), Postives = 64/68 (94.12%), Query Frame = 0 

Query: 1   MMNGWLTMALIGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQDKRQT 60
           + N WLTMAL+GGFARIGNNE+TILVNDAEK SDIDPQEAQQTLEIAEANLRKA+ KRQT
Sbjct: 53  LANQWLTMALMGGFARIGNNEITILVNDAEKNSDIDPQEAQQTLEIAEANLRKAEGKRQT 112

Query: 61  IEANLALR 69
           IEANLALR
Sbjct: 113 IEANLALR 120

[Close]
BLAST of MELO3C014693 vs. ExPASy Swiss-Prot
Match: Q09MH2 (ATP synthase epsilon chain, chloroplastic OS=Citrus sinensis OX=2711 GN=atpE PE=3 SV=1)

HSP 1 Score: 115.2 bits (287), Expect = 3.0e-25
Identity = 59/64 (92.19%), Postives = 63/64 (98.44%), Query Frame = 0 

Query: 5   WLTMALIGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQDKRQTIEAN 64
           WLTMAL+GGFARIGNNE+TILVNDAEK+SDIDPQEAQQTLEIAEANLRKA+ KRQTIEAN
Sbjct: 57  WLTMALMGGFARIGNNEITILVNDAEKSSDIDPQEAQQTLEIAEANLRKAESKRQTIEAN 116

Query: 65  LALR 69
           LALR
Sbjct: 117 LALR 120

[Close]
BLAST of MELO3C014693 vs. ExPASy Swiss-Prot
Match: Q49KZ2 (ATP synthase epsilon chain, chloroplastic OS=Eucalyptus globulus subsp. globulus OX=71271 GN=atpE PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.9e-24
Identity = 57/64 (89.06%), Postives = 62/64 (96.88%), Query Frame = 0 

Query: 5   WLTMALIGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQDKRQTIEAN 64
           WLTMAL+GGFARIGNNE+TILVNDAEK SDIDPQEAQ+TLE+AEANLRKA+ KRQTIEAN
Sbjct: 57  WLTMALMGGFARIGNNEITILVNDAEKGSDIDPQEAQETLELAEANLRKAEGKRQTIEAN 116

Query: 65  LALR 69
           LALR
Sbjct: 117 LALR 120

[Close]
BLAST of MELO3C014693 vs. ExPASy Swiss-Prot
Match: A0ZZ41 (ATP synthase epsilon chain, chloroplastic OS=Gossypium barbadense OX=3634 GN=atpE PE=3 SV=1)

HSP 1 Score: 112.5 bits (280), Expect = 1.9e-24
Identity = 58/64 (90.62%), Postives = 61/64 (95.31%), Query Frame = 0 

Query: 5   WLTMALIGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQDKRQTIEAN 64
           WLTMAL+GGFARIGNNE+TILVNDAEK SDIDPQEAQQ LEIAEANLRKA+ KRQTIEAN
Sbjct: 57  WLTMALMGGFARIGNNEITILVNDAEKGSDIDPQEAQQALEIAEANLRKAEGKRQTIEAN 116

Query: 65  LALR 69
           LALR
Sbjct: 117 LALR 120

[Close]
BLAST of MELO3C014693 vs. ExPASy TrEMBL
Match: A0A5D3DDV0 (ATP synthase CF1 epsilon subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold859G00700 PE=4 SV=1)

HSP 1 Score: 124.4 bits (311), Expect = 1.8e-25
Identity = 65/68 (95.59%), Postives = 66/68 (97.06%), Query Frame = 0 

Query: 1  MMNGWLTMALIGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQDKRQT 60
          MMNGWLTMAL+GGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEI EANLRKAQ KRQT
Sbjct: 1  MMNGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIVEANLRKAQGKRQT 60

Query: 61 IEANLALR 69
          IEANLALR
Sbjct: 61 IEANLALR 68

[Close]
BLAST of MELO3C014693 vs. ExPASy TrEMBL
Match: A0A218KG49 (ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus var. hardwickii OX=319220 GN=atpE PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.4e-24
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 0 

Query: 3   NGWLTMALIGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQDKRQTIE 62
           +GWLTMAL+GGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQ KRQTIE
Sbjct: 57  DGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIE 116

Query: 63  ANLALR 69
           ANLALR
Sbjct: 117 ANLALR 122

[Close]
BLAST of MELO3C014693 vs. ExPASy TrEMBL
Match: G3ETZ1 (ATP synthase epsilon chain, chloroplastic OS=Cucumis melo subsp. melo OX=412675 GN=atpE PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.4e-24
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 0 

Query: 3   NGWLTMALIGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQDKRQTIE 62
           +GWLTMAL+GGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQ KRQTIE
Sbjct: 57  DGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIE 116

Query: 63  ANLALR 69
           ANLALR
Sbjct: 117 ANLALR 122

[Close]
BLAST of MELO3C014693 vs. ExPASy TrEMBL
Match: A0A1X9Q1L0 (ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus OX=3659 GN=atpE PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.4e-24
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 0 

Query: 3   NGWLTMALIGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQDKRQTIE 62
           +GWLTMAL+GGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQ KRQTIE
Sbjct: 57  DGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIE 116

Query: 63  ANLALR 69
           ANLALR
Sbjct: 117 ANLALR 122

[Close]
BLAST of MELO3C014693 vs. ExPASy TrEMBL
Match: A0A249RZA2 (ATP synthase epsilon chain, chloroplastic OS=Cucumis melo var. cantalupensis OX=3658 GN=atpE PE=3 SV=1)

HSP 1 Score: 120.2 bits (300), Expect = 3.4e-24
Identity = 63/66 (95.45%), Postives = 65/66 (98.48%), Query Frame = 0 

Query: 3   NGWLTMALIGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQDKRQTIE 62
           +GWLTMAL+GGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQ KRQTIE
Sbjct: 57  DGWLTMALMGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQGKRQTIE 116

Query: 63  ANLALR 69
           ANLALR
Sbjct: 117 ANLALR 122

[Close]
BLAST of MELO3C014693 vs. TAIR 10
Match: ATCG00470.1 (ATP synthase epsilon chain )

HSP 1 Score: 115.5 bits (288), Expect = 1.6e-26
Identity = 60/68 (88.24%), Postives = 64/68 (94.12%), Query Frame = 0 

Query: 1   MMNGWLTMALIGGFARIGNNEVTILVNDAEKASDIDPQEAQQTLEIAEANLRKAQDKRQT 60
           + N WLTMAL+GGFARIGNNE+TILVNDAEK SDIDPQEAQQTLEIAEANLRKA+ KRQT
Sbjct: 53  LANQWLTMALMGGFARIGNNEITILVNDAEKNSDIDPQEAQQTLEIAEANLRKAEGKRQT 112

Query: 61  IEANLALR 69
           IEANLALR
Sbjct: 113 IEANLALR 120

The following BLAST results are available for this feature:
BLAST of MELO3C014693 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0040079.13.8e-2595.59ATP synthase CF1 epsilon subunit [Cucumis melo var. makuwa] >TYK21703.1 ATP synt... [more]
YP_009752081.17.1e-2495.45CF1 subunit epsilon [Dendrosicyos socotranus] >YP_009753095.1 CF1 subunit epsilo... [more]
YP_009752418.17.1e-2495.45CF1 subunit epsilon [Trichosanthes tricuspidata] >YP_009753626.1 CF1 subunit eps... [more]
ASY96329.17.1e-2495.45ATP synthase CF1 epsilon subunit [Cucumis melo subsp. agrestis][more]
ALO22128.17.1e-2495.45AtpE [Cucurbita ficifolia] >QWV60846.1 ATP synthase CF1 epsilon subunit [Cucurbi... [more]
BLAST of MELO3C014693 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q4VZG99.3e-2795.45ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus OX=3659 GN=atpE PE=... [more]
P094682.3e-2588.24ATP synthase epsilon chain, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=atp... [more]
Q09MH23.0e-2592.19ATP synthase epsilon chain, chloroplastic OS=Citrus sinensis OX=2711 GN=atpE PE=... [more]
Q49KZ21.9e-2489.06ATP synthase epsilon chain, chloroplastic OS=Eucalyptus globulus subsp. globulus... [more]
A0ZZ411.9e-2490.63ATP synthase epsilon chain, chloroplastic OS=Gossypium barbadense OX=3634 GN=atp... [more]
BLAST of MELO3C014693 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3DDV01.8e-2595.59ATP synthase CF1 epsilon subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676... [more]
A0A218KG493.4e-2495.45ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus var. hardwickii OX=... [more]
G3ETZ13.4e-2495.45ATP synthase epsilon chain, chloroplastic OS=Cucumis melo subsp. melo OX=412675 ... [more]
A0A1X9Q1L03.4e-2495.45ATP synthase epsilon chain, chloroplastic OS=Cucumis sativus OX=3659 GN=atpE PE=... [more]
A0A249RZA23.4e-2495.45ATP synthase epsilon chain, chloroplastic OS=Cucumis melo var. cantalupensis OX=... [more]
BLAST of MELO3C014693 vs. TAIR 10
Match NameE-valueIdentityDescription
ATCG00470.11.6e-2688.24ATP synthase epsilon chain [more]
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableCOILSCoilCoilcoord: 37..64
NoneNo IPR availableGENE3D6.10.140.480coord: 37..68
e-value: 4.6E-16
score: 60.1
NoneNo IPR availablePANTHERPTHR13822:SF10ATP SYNTHASE EPSILON CHAIN, CHLOROPLASTICcoord: 3..68
IPR036771F0F1 ATP synthase delta/epsilon subunit, N-terminalGENE3D2.60.15.10coord: 2..36
e-value: 4.0E-5
score: 25.6
IPR001469ATP synthase, F1 complex, delta/epsilon subunitPANTHERPTHR13822ATP SYNTHASE DELTA/EPSILON CHAINcoord: 3..68
IPR001469ATP synthase, F1 complex, delta/epsilon subunitCDDcd12152F1-ATPase_deltacoord: 3..68
e-value: 3.21956E-16
score: 65.2256

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C014693.1MELO3C014693.1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
biological_process GO:0015986 ATP synthesis coupled proton transport
cellular_component GO:0045261 proton-transporting ATP synthase complex, catalytic core F(1)
molecular_function GO:0046933 proton-transporting ATP synthase activity, rotational mechanism