MELO3C014449 (gene) Melon (DHL92) v4

Overview


Name	MELO3C014449
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Transcription factor GTE9 isoform X4
Location	chr05: 2333345 .. 2333938 (-)
RNA-Seq Expression	MELO3C014449
Synteny	MELO3C014449

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTGTGTGGTTCCTCGACTTCCATCAAACCATTGAAGGCGAAGGTAACGACGATAGTGAAGCCGAAGAAAGCAAAACCAACGCCGACGATGGGAACTACTCCATTAACAGCGATCAGATATAACGATAACCATAATAATCGAGTGAGTATGCTGAAGAGAAGATTCGCGGGTACCATCTTGAAAGCACAGCAGCAACTTTCTGAAAGGGAAAGGATTATGTGCAATGTGGAGAAGAAACAACCTCCAACTCTAGCTTCGACTCCGACGACTATGATGGATGAACGGAGAGAAGCCACTCGAGAGGCTTTGTGGAGGAAGAAAGAACCTACGACTACTCCAACAAAGAATTCTAATGAAGAACTAAGAAAAGTTGTCCAAAGGGCGTTCTCTCCGACTCCAATTCCGAGTTCAACTGAAGAAATAAGAAAAGCGGCTCGAAGAGCTTTGGAGGAGTTGGAGCGGAGCGTTGATATTGAGGACAGCCACAAATCGGTGAAGGATTTGGAGAGACTTTGCGGTTGGCCTATCCCTTACGTTGGTGGTTTCAAGAACAGGATGGAATATTATGGTTTATATTTGAAGAATTATTAG

mRNA sequence

ATGGTGTGTGGTTCCTCGACTTCCATCAAACCATTGAAGGCGAAGGTAACGACGATAGTGAAGCCGAAGAAAGCAAAACCAACGCCGACGATGGGAACTACTCCATTAACAGCGATCAGATATAACGATAACCATAATAATCGAGTGAGTATGCTGAAGAGAAGATTCGCGGGTACCATCTTGAAAGCACAGCAGCAACTTTCTGAAAGGGAAAGGATTATGTGCAATGTGGAGAAGAAACAACCTCCAACTCTAGCTTCGACTCCGACGACTATGATGGATGAACGGAGAGAAGCCACTCGAGAGGCTTTGTGGAGGAAGAAAGAACCTACGACTACTCCAACAAAGAATTCTAATGAAGAACTAAGAAAAGTTGTCCAAAGGGCGTTCTCTCCGACTCCAATTCCGAGTTCAACTGAAGAAATAAGAAAAGCGGCTCGAAGAGCTTTGGAGGAGTTGGAGCGGAGCGTTGATATTGAGGACAGCCACAAATCGGTGAAGGATTTGGAGAGACTTTGCGGTTGGCCTATCCCTTACGTTGGTGGTTTCAAGAACAGGATGGAATATTATGGTTTATATTTGAAGAATTATTAG

Coding sequence (CDS)

ATGGTGTGTGGTTCCTCGACTTCCATCAAACCATTGAAGGCGAAGGTAACGACGATAGTGAAGCCGAAGAAAGCAAAACCAACGCCGACGATGGGAACTACTCCATTAACAGCGATCAGATATAACGATAACCATAATAATCGAGTGAGTATGCTGAAGAGAAGATTCGCGGGTACCATCTTGAAAGCACAGCAGCAACTTTCTGAAAGGGAAAGGATTATGTGCAATGTGGAGAAGAAACAACCTCCAACTCTAGCTTCGACTCCGACGACTATGATGGATGAACGGAGAGAAGCCACTCGAGAGGCTTTGTGGAGGAAGAAAGAACCTACGACTACTCCAACAAAGAATTCTAATGAAGAACTAAGAAAAGTTGTCCAAAGGGCGTTCTCTCCGACTCCAATTCCGAGTTCAACTGAAGAAATAAGAAAAGCGGCTCGAAGAGCTTTGGAGGAGTTGGAGCGGAGCGTTGATATTGAGGACAGCCACAAATCGGTGAAGGATTTGGAGAGACTTTGCGGTTGGCCTATCCCTTACGTTGGTGGTTTCAAGAACAGGATGGAATATTATGGTTTATATTTGAAGAATTATTAG

Protein sequence

MVCGSSTSIKPLKAKVTTIVKPKKAKPTPTMGTTPLTAIRYNDNHNNRVSMLKRRFAGTILKAQQQLSERERIMCNVEKKQPPTLASTPTTMMDERREATREALWRKKEPTTTPTKNSNEELRKVVQRAFSPTPIPSSTEEIRKAARRALEELERSVDIEDSHKSVKDLERLCGWPIPYVGGFKNRMEYYGLYLKNY

Homology

[Close]

BLAST of MELO3C014449 vs. NCBI nr
Match: KAA0061663.1 (transcription factor GTE9 isoform X4 [Cucumis melo var. makuwa] >TYK21138.1 transcription factor GTE9 isoform X4 [Cucumis melo var. makuwa])

HSP 1 Score: 384.8 bits (987), Expect = 4.5e-103
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MVCGSSTSIKPLKAKVTTIVKPKKAKPTPTMGTTPLTAIRYNDNHNNRVSMLKRRFAGTI 60
           MVCGSSTSIKPLKAKVTTIVKPKKAKPTPTMGTTPLTAIRYNDNHNNRVSMLKRRFAGTI
Sbjct: 1   MVCGSSTSIKPLKAKVTTIVKPKKAKPTPTMGTTPLTAIRYNDNHNNRVSMLKRRFAGTI 60

Query: 61  LKAQQQLSERERIMCNVEKKQPPTLASTPTTMMDERREATREALWRKKEPTTTPTKNSNE 120
           LKAQQQLSERERIMCNVEKKQPPTLASTPTTMMDERREATREALWRKKEPTTTPTKNSNE
Sbjct: 61  LKAQQQLSERERIMCNVEKKQPPTLASTPTTMMDERREATREALWRKKEPTTTPTKNSNE 120

Query: 121 ELRKVVQRAFSPTPIPSSTEEIRKAARRALEELERSVDIEDSHKSVKDLERLCGWPIPYV 180
           ELRKVVQRAFSPTPIPSSTEEIRKAARRALEELERSVDIEDSHKSVKDLERLCGWPIPYV
Sbjct: 121 ELRKVVQRAFSPTPIPSSTEEIRKAARRALEELERSVDIEDSHKSVKDLERLCGWPIPYV 180

Query: 181 GGFKNRMEYYGLYLKNY 198
           GGFKNRMEYYGLYLKNY
Sbjct: 181 GGFKNRMEYYGLYLKNY 197

[Close]

BLAST of MELO3C014449 vs. NCBI nr
Match: KAG6571342.1 (hypothetical protein SDJN03_30257, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 101.7 bits (252), Expect = 7.5e-18
Identity = 73/192 (38.02%), Postives = 105/192 (54.69%), Query Frame = 0


Query: 6   STSIKP-LKAKVTTIVKPKKAKPTPTMGTTPLTAIRYNDNHNNRVSMLKRRFAGTILKAQ 65
           S + KP L    T++ K K   PT  +   P      +   +NR  +LK++FAGTI KAQ
Sbjct: 18  SKAKKPSLSLPPTSLTKAKTLAPTTIV---PRPTPSSSSGEDNRAKILKKKFAGTIWKAQ 77

Query: 66  QQLSERERIMCNVEKKQPPTLASTPTTMMDERREATREALWRKKEPTTTPTKNSNEELRK 125
           + LS+  + + + ++++     S     +D+RR            P   P+   +E    
Sbjct: 78  RHLSKNRKKVRSEKRREADGKGS---EAVDDRRVV----------PPLAPSLEDDEITML 137

Query: 126 VVQRAFSPTPIPSSTEEIRKAARRALEELERSVDIEDSHKSVKDLERLCGWPIPYVGGFK 185
            V+R           EE+R AARR LEE+ER V ++DSH S+++ ERLCG+PIPYVGGF 
Sbjct: 138 KVRR-----------EEMRAAARRDLEEVERRVVVDDSHASLREYERLCGFPIPYVGGFL 182

Query: 186 NRMEYYGLYLKN 197
           NRM YYGLYLK+
Sbjct: 198 NRMHYYGLYLKD 182

[Close]

BLAST of MELO3C014449 vs. NCBI nr
Match: CAD6266490.1 (unnamed protein product [Miscanthus lutarioriparius])

HSP 1 Score: 55.1 bits (131), Expect = 8.1e-04
Identity = 55/169 (32.54%), Postives = 82/169 (48.52%), Query Frame = 0


Query: 42  NDNHNNRVSMLKRRFAGTILKAQQQLSERERIMCNVEKKQPPTLASTPTTMMDERREATR 101
           N +   R ++L+ RFA TILKA      RE+ +    KK P  L          R     
Sbjct: 496 NPDKQIRAALLRSRFADTILKA------REKALDQTTKKDPEKL---------RREREEL 555

Query: 102 EALWRKKEPTTTPTKNSNEELRKVVQRAFSPTPIPSSTEEI---RKAARRALEELERSVD 161
           E + R++         + E++RK  + A +      +  +I   R+AAR+AL+E+E++VD
Sbjct: 556 ERVQREERARLQAEAKAAEDVRKRAEAAAAAEAAAEAKRQIELEREAARKALQEMEKTVD 615

Query: 162 IEDSHKSVKDLERL---CGWPIP-YVG----GFK---NRMEYYGLYLKN 197
           I +    +KDLE L    G  IP  VG    GF+   N +E  GLY+KN
Sbjct: 616 INEGSHFLKDLEMLGSVTGEQIPNLVGETSPGFQMGSNTLEKLGLYMKN 649

[Close]

BLAST of MELO3C014449 vs. ExPASy TrEMBL
Match: A0A5D3DC97 (Transcription factor GTE9 isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold75860G00060 PE=4 SV=1)

HSP 1 Score: 384.8 bits (987), Expect = 2.2e-103
Identity = 197/197 (100.00%), Postives = 197/197 (100.00%), Query Frame = 0


Query: 1   MVCGSSTSIKPLKAKVTTIVKPKKAKPTPTMGTTPLTAIRYNDNHNNRVSMLKRRFAGTI 60
           MVCGSSTSIKPLKAKVTTIVKPKKAKPTPTMGTTPLTAIRYNDNHNNRVSMLKRRFAGTI
Sbjct: 1   MVCGSSTSIKPLKAKVTTIVKPKKAKPTPTMGTTPLTAIRYNDNHNNRVSMLKRRFAGTI 60

Query: 61  LKAQQQLSERERIMCNVEKKQPPTLASTPTTMMDERREATREALWRKKEPTTTPTKNSNE 120
           LKAQQQLSERERIMCNVEKKQPPTLASTPTTMMDERREATREALWRKKEPTTTPTKNSNE
Sbjct: 61  LKAQQQLSERERIMCNVEKKQPPTLASTPTTMMDERREATREALWRKKEPTTTPTKNSNE 120

Query: 121 ELRKVVQRAFSPTPIPSSTEEIRKAARRALEELERSVDIEDSHKSVKDLERLCGWPIPYV 180
           ELRKVVQRAFSPTPIPSSTEEIRKAARRALEELERSVDIEDSHKSVKDLERLCGWPIPYV
Sbjct: 121 ELRKVVQRAFSPTPIPSSTEEIRKAARRALEELERSVDIEDSHKSVKDLERLCGWPIPYV 180

Query: 181 GGFKNRMEYYGLYLKNY 198
           GGFKNRMEYYGLYLKNY
Sbjct: 181 GGFKNRMEYYGLYLKNY 197

[Close]

BLAST of MELO3C014449 vs. ExPASy TrEMBL
Match: A0A0A0KGL2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G421730 PE=4 SV=1)

HSP 1 Score: 270.8 bits (691), Expect = 4.5e-69
Identity = 159/213 (74.65%), Postives = 172/213 (80.75%), Query Frame = 0


Query: 1   MVCGSSTSIKPLKAKVTTIVK-PKKAKPTPTMGTTPLTAIRYNDNHNNRVSMLKRRFAGT 60
           MVC SSTSIKPLK KVTTI+K PKKAKPTPTM TTPLTAI ++D H  RVSMLK RFA T
Sbjct: 7   MVCNSSTSIKPLKVKVTTIMKQPKKAKPTPTMETTPLTAITFDDKH-YRVSMLKSRFAST 66

Query: 61  ILKAQQQLSERERIMCNVEKKQPPTLASTPTTMMDERREATREALWRKKEP--------T 120
           ILKAQQQLSE +R +CNVEKK PPT A TP   M+ERREATREA WR K+P        T
Sbjct: 67  ILKAQQQLSESKRKVCNVEKK-PPTPALTP---MEERREATREASWRNKKPTATATATAT 126

Query: 121 TTPTKNSNEE-LRKVVQRA------FSPTPIPSSTEEIRKAARRALEELERSVDIEDSHK 180
           TTPT NSNEE  R+VVQRA        PTPI +STEEIR+AAR+ALE+LERSVD+EDSHK
Sbjct: 127 TTPTTNSNEEPTREVVQRALWRKMKLPPTPILTSTEEIRRAARQALEDLERSVDVEDSHK 186

Query: 181 SVKDLERLCGWPIPYVGGFKNRMEYYGLYLKNY 198
           SVKDLERLCGWPIP VGGFKNRMEYYGLYLKNY
Sbjct: 187 SVKDLERLCGWPIPSVGGFKNRMEYYGLYLKNY 214

[Close]

BLAST of MELO3C014449 vs. ExPASy TrEMBL
Match: A0A438D285 (Transcription factor GTE11 OS=Vitis vinifera OX=29760 GN=GTE11_3 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 8.7e-04
Identity = 51/182 (28.02%), Postives = 83/182 (45.60%), Query Frame = 0


Query: 34  TPLTAIRYNDNHNNRVSMLKRRFAGTILKAQQQLSERERIMCNVEKKQPPTLASTPTTMM 93
           TP+  ++ +     R +MLK RFA TILKAQQ+                        T++
Sbjct: 456 TPIFDVQLSPKKALRAAMLKSRFADTILKAQQK------------------------TLL 515

Query: 94  DERREATREALWRKKEPTTTPTKNSNEELRKVVQRAFSPTPIPSST------EEIRKAAR 153
           D   +A R  + +KKE            L   V+ A + + + + T      E+ R+AAR
Sbjct: 516 DHGNKADRVKMQQKKERLEKKQLEEKGRLEAQVRAAEAASRMKAETESKLQREKEREAAR 575

Query: 154 RALEELERSVDIEDSHKSVKDLERLCGWPIPY-------------VGGFKNRMEYYGLYL 197
            AL+++ R+V+ E++ + VK+LE+L G  + Y                F N +E  GLY+
Sbjct: 576 VALQKMARTVEFENNVQIVKELEKLSGCVLTYQYYRQRDSKVQLRAFNFGNPLERLGLYI 613

[Close]

BLAST of MELO3C014449 vs. ExPASy TrEMBL
Match: A5C0I5 (Bromo domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_007433 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 8.7e-04
Identity = 51/182 (28.02%), Postives = 83/182 (45.60%), Query Frame = 0


Query: 34  TPLTAIRYNDNHNNRVSMLKRRFAGTILKAQQQLSERERIMCNVEKKQPPTLASTPTTMM 93
           TP+  ++ +     R +MLK RFA TILKAQQ+                        T++
Sbjct: 408 TPIFDVQLSPKKALRAAMLKSRFADTILKAQQK------------------------TLL 467

Query: 94  DERREATREALWRKKEPTTTPTKNSNEELRKVVQRAFSPTPIPSST------EEIRKAAR 153
           D   +A R  + +KKE            L   V+ A + + + + T      E+ R+AAR
Sbjct: 468 DHGNKADRVKMQQKKERLEKKQLEEKGRLEAQVRAAEAASRMKAETESKLQREKEREAAR 527

Query: 154 RALEELERSVDIEDSHKSVKDLERLCGWPIPY-------------VGGFKNRMEYYGLYL 197
            AL+++ R+V+ E++ + VK+LE+L G  + Y                F N +E  GLY+
Sbjct: 528 VALQKMARTVEFENNVQIVKELEKLSGCVLTYQYYRQRDSKVQLRAFNFGNPLERLGLYI 565

[Close]

BLAST of MELO3C014449 vs. ExPASy TrEMBL
Match: A0A438H372 (Transcription factor GTE11 OS=Vitis vinifera OX=29760 GN=GTE11_1 PE=4 SV=1)

HSP 1 Score: 53.9 bits (128), Expect = 8.7e-04
Identity = 51/182 (28.02%), Postives = 83/182 (45.60%), Query Frame = 0


Query: 34  TPLTAIRYNDNHNNRVSMLKRRFAGTILKAQQQLSERERIMCNVEKKQPPTLASTPTTMM 93
           TP+  ++ +     R +MLK RFA TILKAQQ+                        T++
Sbjct: 452 TPIFDVQLSPKKALRAAMLKSRFADTILKAQQK------------------------TLL 511

Query: 94  DERREATREALWRKKEPTTTPTKNSNEELRKVVQRAFSPTPIPSST------EEIRKAAR 153
           D   +A R  + +KKE            L   V+ A + + + + T      E+ R+AAR
Sbjct: 512 DHGNKADRVKMQQKKERLEKKQLEEKGRLEAQVRAAEAASRMKAETESKLQREKEREAAR 571

Query: 154 RALEELERSVDIEDSHKSVKDLERLCGWPIPY-------------VGGFKNRMEYYGLYL 197
            AL+++ R+V+ E++ + VK+LE+L G  + Y                F N +E  GLY+
Sbjct: 572 VALQKMARTVEFENNVQIVKELEKLSGCVLTYQYYRQRDSKVQLRAFNFGNPLERLGLYI 609

[Close]

BLAST of MELO3C014449 vs. TAIR 10
Match: AT5G63320.1 (nuclear protein X1 )

HSP 1 Score: 43.1 bits (100), Expect = 3.0e-04
Identity = 50/173 (28.90%), Postives = 77/173 (44.51%), Query Frame = 0


Query: 48  RVSMLKRRFAGTILKAQQQLSERERIMCNVEKKQPPTLASTPTTMMDERREATREALWRK 107
           R + LK RFA TI+KA      RE+     EK  P  L           RE   + L  +
Sbjct: 560 RAAFLKNRFADTIMKA------REKAFTKGEKGDPEKLRI--------EREEFEKRLREE 619

Query: 108 KEPTTTPTKNSNEELRKVVQRAFSPTPIPSSTEEIRKAARRALEELERSVDIEDSHKSVK 167
           KE      K + E  RK   +A +        E+ R+AAR+AL+++E++V+I +  + ++
Sbjct: 620 KERLQAEAKAAEEARRKA--KAEAAEKARREREQEREAARQALQKMEKTVEINEGIRFME 679

Query: 168 DLERLC-----GWPIPY---------------VGGFK-----NRMEYYGLYLK 196
           DL+ L      G  +P                +G FK     N +E+ GLY+K
Sbjct: 680 DLQMLRATGTEGDQLPTSMEVMSPKFSEDMLGLGSFKMESNSNPLEHLGLYMK 716

[Close]

BLAST of MELO3C014449 vs. TAIR 10
Match: AT3G01770.1 (bromodomain and extraterminal domain protein 10 )

HSP 1 Score: 41.6 bits (96), Expect = 8.6e-04
Identity = 42/125 (33.60%), Postives = 59/125 (47.20%), Query Frame = 0


Query: 48  RVSMLKRRFAGTILKAQQQLSERERIMCNVEKKQPPTLASTPTTMMDERREATREALWRK 107
           R ++LK RFA  ILKAQ      E  +   EK+ P TL          +RE     L +K
Sbjct: 449 RAALLKNRFADIILKAQ------EITLNQNEKRDPETL----------QREKEELELQKK 508

Query: 108 KEPTTTPTKNSNEELRKVVQRAFSPTPIPSSTEEIRKAARRALEELERSVDIEDSHKSVK 167
           KE      +    E     +R           E  R+AAR+AL E+E+SV+I ++ + +K
Sbjct: 509 KEKARLQAEAKEAE---EARRKAEAQEAKRKLELEREAARQALLEMEKSVEINENTRFLK 554

Query: 168 DLERL 173
           DLE L
Sbjct: 569 DLELL 554

The following BLAST results are available for this feature:

BLAST of MELO3C014449 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0061663.1	4.5e-103	100.00	transcription factor GTE9 isoform X4 [Cucumis melo var. makuwa] >TYK21138.1 tran...	[more]
KAG6571342.1	7.5e-18	38.02	hypothetical protein SDJN03_30257, partial [Cucurbita argyrosperma subsp. sorori...	[more]
CAD6266490.1	8.1e-04	32.54	unnamed protein product [Miscanthus lutarioriparius]	[more]

BLAST of MELO3C014449 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C014449 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DC97	2.2e-103	100.00	Transcription factor GTE9 isoform X4 OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A0A0KGL2	4.5e-69	74.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G421730 PE=4 SV=1	[more]
A0A438D285	8.7e-04	28.02	Transcription factor GTE11 OS=Vitis vinifera OX=29760 GN=GTE11_3 PE=4 SV=1	[more]
A5C0I5	8.7e-04	28.02	Bromo domain-containing protein OS=Vitis vinifera OX=29760 GN=VITISV_007433 PE=4...	[more]
A0A438H372	8.7e-04	28.02	Transcription factor GTE11 OS=Vitis vinifera OX=29760 GN=GTE11_1 PE=4 SV=1	[more]

BLAST of MELO3C014449 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G63320.1	3.0e-04	28.90	nuclear protein X1	[more]
AT3G01770.1	8.6e-04	33.60	bromodomain and extraterminal domain protein 10	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46136	TRANSCRIPTION FACTOR GTE8	coord: 43..196

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C014449.1	MELO3C014449.1	mRNA