MELO3C014426 (gene) Melon (DHL92) v4

Overview


Name	MELO3C014426
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Transcription factor like
Location	chr05: 2513719 .. 2513904 (-)
RNA-Seq Expression	MELO3C014426
Synteny	MELO3C014426

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAAGACCAACACCTACGACGAGATTGTTTTAGTTCAAGACAGCCATATCCTCTATTCCACTGCCAGAAAATACCATTGCAGTAAGGTCTTCACTGCCAAAGGCCCTCTCGACCACGATGTCAAATTGTTAGCTCACACTGCCATCCGATTCTATGATGTGCAAGATCGATTGGGTTACAAATAG

mRNA sequence

ATGAAGACCAACACCTACGACGAGATTGTTTTAGTTCAAGACAGCCATATCCTCTATTCCACTGCCAGAAAATACCATTGCAGTAAGGTCTTCACTGCCAAAGGCCCTCTCGACCACGATGTCAAATTGTTAGCTCACACTGCCATCCGATTCTATGATGTGCAAGATCGATTGGGTTACAAATAG

Coding sequence (CDS)

ATGAAGACCAACACCTACGACGAGATTGTTTTAGTTCAAGACAGCCATATCCTCTATTCCACTGCCAGAAAATACCATTGCAGTAAGGTCTTCACTGCCAAAGGCCCTCTCGACCACGATGTCAAATTGTTAGCTCACACTGCCATCCGATTCTATGATGTGCAAGATCGATTGGGTTACAAATAG

Protein sequence

MKTNTYDEIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGYK

Homology

[Close]

BLAST of MELO3C014426 vs. NCBI nr
Match: XP_038877605.1 (transcription factor TCP10-like [Benincasa hispida])

HSP 1 Score: 84.7 bits (208), Expect = 3.0e-13
Identity = 44/60 (73.33%), Postives = 46/60 (76.67%), Query Frame = 0


Query: 1  MKTNTYDEIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 60
          MKT+T  EIV VQ  HIL ST RK   SKVFTAKGP D  V+L AHTAIRFYDVQDRLGY
Sbjct: 1  MKTSTGGEIVPVQGGHILRSTGRKDRHSKVFTAKGPRDRRVRLSAHTAIRFYDVQDRLGY 60

[Close]

BLAST of MELO3C014426 vs. NCBI nr
Match: XP_022989259.1 (transcription factor TCP10-like [Cucurbita maxima])

HSP 1 Score: 82.0 bits (201), Expect = 1.9e-12
Identity = 42/60 (70.00%), Postives = 46/60 (76.67%), Query Frame = 0


Query: 1  MKTNTYDEIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 60
          MKT+   EIV VQ  HI+ STARK   SKVFTAKGP D  V+L AHTAIRFYDVQD+LGY
Sbjct: 1  MKTSAAAEIVPVQGGHIIRSTARKDRHSKVFTAKGPRDRRVRLSAHTAIRFYDVQDQLGY 60

[Close]

BLAST of MELO3C014426 vs. NCBI nr
Match: KAG6589264.1 (Transcription factor TCP10, partial [Cucurbita argyrosperma subsp. sororia] >KAG7022963.1 Transcription factor TCP10, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 80.5 bits (197), Expect = 5.6e-12
Identity = 41/60 (68.33%), Postives = 46/60 (76.67%), Query Frame = 0


Query: 1  MKTNTYDEIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 60
          MK++   EIV VQ  HI+ STARK   SKVFTAKGP D  V+L AHTAIRFYDVQD+LGY
Sbjct: 1  MKSSAAAEIVPVQGGHIIRSTARKDRHSKVFTAKGPRDRRVRLSAHTAIRFYDVQDQLGY 60

[Close]

BLAST of MELO3C014426 vs. NCBI nr
Match: XP_023529225.1 (transcription factor TCP10-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 80.5 bits (197), Expect = 5.6e-12
Identity = 41/60 (68.33%), Postives = 46/60 (76.67%), Query Frame = 0


Query: 1  MKTNTYDEIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 60
          MK++   EIV VQ  HI+ STARK   SKVFTAKGP D  V+L AHTAIRFYDVQD+LGY
Sbjct: 1  MKSSAAAEIVPVQGGHIIRSTARKDRHSKVFTAKGPRDRRVRLSAHTAIRFYDVQDQLGY 60

[Close]

BLAST of MELO3C014426 vs. NCBI nr
Match: XP_022930891.1 (transcription factor TCP10-like [Cucurbita moschata])

HSP 1 Score: 79.3 bits (194), Expect = 1.2e-11
Identity = 40/60 (66.67%), Postives = 46/60 (76.67%), Query Frame = 0


Query: 1  MKTNTYDEIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 60
          MK++   EIV VQ  HI+ STARK   SKVFT+KGP D  V+L AHTAIRFYDVQD+LGY
Sbjct: 1  MKSSAAAEIVPVQGGHIIRSTARKDRHSKVFTSKGPRDRRVRLSAHTAIRFYDVQDQLGY 60

[Close]

BLAST of MELO3C014426 vs. ExPASy Swiss-Prot
Match: O82277 (Transcription factor TCP10 OS=Arabidopsis thaliana OX=3702 GN=TCP10 PE=1 SV=1)

HSP 1 Score: 73.6 bits (179), Expect = 8.9e-13
Identity = 36/53 (67.92%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 8  EIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
          EIV VQ  HI+ +T RK   SKVFT+KGP D  V+L AHTAI+FYDVQDRLGY
Sbjct: 14 EIVEVQGGHIIRATGRKDRHSKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGY 66

[Close]

BLAST of MELO3C014426 vs. ExPASy Swiss-Prot
Match: A2WM14 (Transcription factor PCF5 OS=Oryza sativa subsp. indica OX=39946 GN=PCF5 PE=4 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.6e-12
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 8   EIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
           EIV VQ  HI+ ST RK   SKV TA+GP D  V+L AHTAI+FYDVQDRLGY
Sbjct: 198 EIVAVQGGHIVRSTGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGY 250

[Close]

BLAST of MELO3C014426 vs. ExPASy Swiss-Prot
Match: Q8LT07 (Transcription factor PCF5 OS=Oryza sativa subsp. japonica OX=39947 GN=PCF5 PE=2 SV=1)

HSP 1 Score: 72.0 bits (175), Expect = 2.6e-12
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 8   EIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
           EIV VQ  HI+ ST RK   SKV TA+GP D  V+L AHTAI+FYDVQDRLGY
Sbjct: 74  EIVAVQGGHIVRSTGRKDRHSKVCTARGPRDRRVRLSAHTAIQFYDVQDRLGY 126

[Close]

BLAST of MELO3C014426 vs. ExPASy Swiss-Prot
Match: Q8LPR5 (Transcription factor TCP4 OS=Arabidopsis thaliana OX=3702 GN=TCP4 PE=1 SV=1)

HSP 1 Score: 70.9 bits (172), Expect = 5.8e-12
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 8  EIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
          EIV VQ  HI+ ST RK   SKV TAKGP D  V+L AHTAI+FYDVQDRLG+
Sbjct: 30 EIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGF 82

[Close]

BLAST of MELO3C014426 vs. ExPASy Swiss-Prot
Match: Q9MAH8 (Transcription factor TCP3 OS=Arabidopsis thaliana OX=3702 GN=TCP3 PE=1 SV=1)

HSP 1 Score: 67.0 bits (162), Expect = 8.4e-11
Identity = 35/53 (66.04%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 8  EIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
          EIV VQ  HI+ ST RK   SKV TAKGP D  V+L A TAI+FYDVQDRLG+
Sbjct: 34 EIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGF 86

[Close]

BLAST of MELO3C014426 vs. ExPASy TrEMBL
Match: A0A6J1JNV1 (transcription factor TCP10-like OS=Cucurbita maxima OX=3661 GN=LOC111486387 PE=4 SV=1)

HSP 1 Score: 82.0 bits (201), Expect = 9.3e-13
Identity = 42/60 (70.00%), Postives = 46/60 (76.67%), Query Frame = 0


Query: 1  MKTNTYDEIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 60
          MKT+   EIV VQ  HI+ STARK   SKVFTAKGP D  V+L AHTAIRFYDVQD+LGY
Sbjct: 1  MKTSAAAEIVPVQGGHIIRSTARKDRHSKVFTAKGPRDRRVRLSAHTAIRFYDVQDQLGY 60

[Close]

BLAST of MELO3C014426 vs. ExPASy TrEMBL
Match: A0A6J1ES58 (transcription factor TCP10-like OS=Cucurbita moschata OX=3662 GN=LOC111437241 PE=4 SV=1)

HSP 1 Score: 79.3 bits (194), Expect = 6.0e-12
Identity = 40/60 (66.67%), Postives = 46/60 (76.67%), Query Frame = 0


Query: 1  MKTNTYDEIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 60
          MK++   EIV VQ  HI+ STARK   SKVFT+KGP D  V+L AHTAIRFYDVQD+LGY
Sbjct: 1  MKSSAAAEIVPVQGGHIIRSTARKDRHSKVFTSKGPRDRRVRLSAHTAIRFYDVQDQLGY 60

[Close]

BLAST of MELO3C014426 vs. ExPASy TrEMBL
Match: A0A803NBK0 (Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1)

HSP 1 Score: 78.6 bits (192), Expect = 1.0e-11
Identity = 39/60 (65.00%), Postives = 45/60 (75.00%), Query Frame = 0


Query: 1  MKTNTYDEIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 60
          +K+ T  EIV VQ  HI+ +T RK   SKVFTAKGP D  V+L AHTAI+FYDVQDRLGY
Sbjct: 3  LKSTTGGEIVQVQGGHIIRATGRKDRHSKVFTAKGPRDRRVRLSAHTAIQFYDVQDRLGY 62

[Close]

BLAST of MELO3C014426 vs. ExPASy TrEMBL
Match: A0A4D6FEA3 (TCP12 OS=Petunia hybrida OX=4102 PE=2 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.3e-11
Identity = 39/60 (65.00%), Postives = 46/60 (76.67%), Query Frame = 0


Query: 1  MKTNTYDEIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 60
          MK  T +EIV V+  HIL ST+RK   SKV+TAKGP D  V+L AHTAI+FYD+QDRLGY
Sbjct: 1  MKRATGEEIVQVEGGHILRSTSRKDRHSKVYTAKGPRDRRVRLSAHTAIQFYDMQDRLGY 60

[Close]

BLAST of MELO3C014426 vs. ExPASy TrEMBL
Match: A0A7J0DYU1 (TCP domain protein 10 OS=Actinidia rufa OX=165716 GN=Acr_00g0097100 PE=4 SV=1)

HSP 1 Score: 78.2 bits (191), Expect = 1.3e-11
Identity = 39/60 (65.00%), Postives = 45/60 (75.00%), Query Frame = 0


Query: 1  MKTNTYDEIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 60
          MK +   EIV VQ  HIL ST+RK   SKVFTAKGP D  +++ AHTAI+FYDVQDRLGY
Sbjct: 3  MKNSGGGEIVQVQGGHILRSTSRKDRHSKVFTAKGPRDRRIRISAHTAIQFYDVQDRLGY 62

[Close]

BLAST of MELO3C014426 vs. TAIR 10
Match: AT2G31070.1 (TCP domain protein 10 )

HSP 1 Score: 73.6 bits (179), Expect = 6.3e-14
Identity = 36/53 (67.92%), Postives = 41/53 (77.36%), Query Frame = 0


Query: 8  EIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
          EIV VQ  HI+ +T RK   SKVFT+KGP D  V+L AHTAI+FYDVQDRLGY
Sbjct: 14 EIVEVQGGHIIRATGRKDRHSKVFTSKGPRDRRVRLSAHTAIQFYDVQDRLGY 66

[Close]

BLAST of MELO3C014426 vs. TAIR 10
Match: AT3G15030.1 (TCP family transcription factor 4 )

HSP 1 Score: 70.9 bits (172), Expect = 4.1e-13
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 8  EIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
          EIV VQ  HI+ ST RK   SKV TAKGP D  V+L AHTAI+FYDVQDRLG+
Sbjct: 30 EIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGF 82

[Close]

BLAST of MELO3C014426 vs. TAIR 10
Match: AT3G15030.2 (TCP family transcription factor 4 )

HSP 1 Score: 70.9 bits (172), Expect = 4.1e-13
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 8  EIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
          EIV VQ  HI+ ST RK   SKV TAKGP D  V+L AHTAI+FYDVQDRLG+
Sbjct: 30 EIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGF 82

[Close]

BLAST of MELO3C014426 vs. TAIR 10
Match: AT3G15030.3 (TCP family transcription factor 4 )

HSP 1 Score: 70.9 bits (172), Expect = 4.1e-13
Identity = 36/53 (67.92%), Postives = 40/53 (75.47%), Query Frame = 0


Query: 8  EIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
          EIV VQ  HI+ ST RK   SKV TAKGP D  V+L AHTAI+FYDVQDRLG+
Sbjct: 30 EIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAHTAIQFYDVQDRLGF 82

[Close]

BLAST of MELO3C014426 vs. TAIR 10
Match: AT1G53230.1 (TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3 )

HSP 1 Score: 67.0 bits (162), Expect = 5.9e-12
Identity = 35/53 (66.04%), Postives = 39/53 (73.58%), Query Frame = 0


Query: 8  EIVLVQDSHILYSTARKYHCSKVFTAKGPLDHDVKLLAHTAIRFYDVQDRLGY 61
          EIV VQ  HI+ ST RK   SKV TAKGP D  V+L A TAI+FYDVQDRLG+
Sbjct: 34 EIVEVQGGHIVRSTGRKDRHSKVCTAKGPRDRRVRLSAPTAIQFYDVQDRLGF 86

The following BLAST results are available for this feature:

BLAST of MELO3C014426 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_038877605.1	3.0e-13	73.33	transcription factor TCP10-like [Benincasa hispida]	[more]
XP_022989259.1	1.9e-12	70.00	transcription factor TCP10-like [Cucurbita maxima]	[more]
KAG6589264.1	5.6e-12	68.33	Transcription factor TCP10, partial [Cucurbita argyrosperma subsp. sororia] >KAG...	[more]
XP_023529225.1	5.6e-12	68.33	transcription factor TCP10-like [Cucurbita pepo subsp. pepo]	[more]
XP_022930891.1	1.2e-11	66.67	transcription factor TCP10-like [Cucurbita moschata]	[more]

BLAST of MELO3C014426 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82277	8.9e-13	67.92	Transcription factor TCP10 OS=Arabidopsis thaliana OX=3702 GN=TCP10 PE=1 SV=1	[more]
A2WM14	2.6e-12	67.92	Transcription factor PCF5 OS=Oryza sativa subsp. indica OX=39946 GN=PCF5 PE=4 SV...	[more]
Q8LT07	2.6e-12	67.92	Transcription factor PCF5 OS=Oryza sativa subsp. japonica OX=39947 GN=PCF5 PE=2 ...	[more]
Q8LPR5	5.8e-12	67.92	Transcription factor TCP4 OS=Arabidopsis thaliana OX=3702 GN=TCP4 PE=1 SV=1	[more]
Q9MAH8	8.4e-11	66.04	Transcription factor TCP3 OS=Arabidopsis thaliana OX=3702 GN=TCP3 PE=1 SV=1	[more]

BLAST of MELO3C014426 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1JNV1	9.3e-13	70.00	transcription factor TCP10-like OS=Cucurbita maxima OX=3661 GN=LOC111486387 PE=4...	[more]
A0A6J1ES58	6.0e-12	66.67	transcription factor TCP10-like OS=Cucurbita moschata OX=3662 GN=LOC111437241 PE...	[more]
A0A803NBK0	1.0e-11	65.00	Uncharacterized protein OS=Chenopodium quinoa OX=63459 PE=4 SV=1	[more]
A0A4D6FEA3	1.3e-11	65.00	TCP12 OS=Petunia hybrida OX=4102 PE=2 SV=1	[more]
A0A7J0DYU1	1.3e-11	65.00	TCP domain protein 10 OS=Actinidia rufa OX=165716 GN=Acr_00g0097100 PE=4 SV=1	[more]

BLAST of MELO3C014426 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G31070.1	6.3e-14	67.92	TCP domain protein 10	[more]
AT3G15030.1	4.1e-13	67.92	TCP family transcription factor 4	[more]
AT3G15030.2	4.1e-13	67.92	TCP family transcription factor 4	[more]
AT3G15030.3	4.1e-13	67.92	TCP family transcription factor 4	[more]
AT1G53230.1	5.9e-12	66.04	TEOSINTE BRANCHED 1, cycloidea and PCF transcription factor 3	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR017887	Transcription factor TCP subgroup	PFAM	PF03634	TCP	coord: 23..61 e-value: 3.0E-7 score: 31.1
IPR017887	Transcription factor TCP subgroup	PROSITE	PS51369	TCP	coord: 20..61 score: 12.53026
None	No IPR available	PANTHER	PTHR31072:SF166	TRANSCRIPTION FACTOR TCP4	coord: 4..60
IPR005333	Transcription factor, TCP	PANTHER	PTHR31072	TRANSCRIPTION FACTOR TCP4-RELATED	coord: 4..60

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C014426.1	MELO3C014426.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003700	DNA-binding transcription factor activity