MELO3C014327 (gene) Melon (DHL92) v4

Overview
NameMELO3C014327
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionPseudouridylate synthase 7-like protein isoform X1
Locationchr05: 3955064 .. 3956022 (+)
RNA-Seq ExpressionMELO3C014327
SyntenyMELO3C014327
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGGTTGCTCTGTTTTGCCAACCAAGAAACAGAGCACTGCCTCGACCTTCAACCAAATAAGATGCTCCTCCCCTGTTAAGAAGCCCGATGGTAAATTTTCGTCCCAACACTTTTTAACCAAGAACTTGGAAATTTTCAAGGAGGATTTAAGGTCCTTTGAGTTTAACAAATGGCCGGAAATCTATAATACGCTAAAGTTATACTTTAATTCAAATGTAATTTTAAATCCTCTCAGCAGAAGTTGCCTTAATCAAACTGAGTAATGGAAAATTGGAAGAACTTGTTGAACTACCTGGAAAATTGCAAGCATTGGGTAAGTTCCATCTAAAGCTTGAGAAATGGGATAAGATGAAGCATAGCCGTCAAATGTGGTGTGTGGTTATGGGGGATGGCTATCTCTACGTAATTTACCTCTAGACTACTGGTGCAGAAAGACTTGAACCCATTGGTGATCACTTCGGAGGTTTAGAAGCTATTTCAGTTGAAACTTTAAATCACACCAATGTAGCGGAAGCGATAATTCAAGTCAAGCGGAACCTCTGTGGTTTTATCCCATCAATGATAGAAATAGCAGATGAGAAATGTGGAACTTTTTTCCTAAATTATGGTGATATTGAAGTTCTTTGTCCTCCTCCAAAAGTCAAAGGTGATTTACTCTTAAATGGATTCTTTTAATCCTATTGATTAGATAAGAGTTTCACAAGTTATGAAGGATGAAGAAGGTGAAACTCCTGAGGTTGATCCAGAAAGGGGTTTCATTAAGGATGCAGGAGAATTGTCAAATTTCAATAGAAACCTGTTTGTCTTCATACCAAGAAAATCTCAAGGGAAGTTTCCAGCTTTGTGCTCGCCGGAAAAACCTCCAGTTCAGTCTCAATCGGTGGCCAGTTCATCGGAATTTAATCCTCAATCTAATGTGAACACAGATACGACATTAAAGAGGAAAGAGAAAGCATAA

mRNA sequence

ATGGGTTGCTCTGTTTTGCCAACCAAGAAACAGAGCACTGCCTCGACCTTCAACCAAATAAGATGCTCCTCCCCTGTTAAGAAGCCCGATGCAGAAGTTGCCTTAATCAAACTGAGTAATGGAAAATTGGAAGAACTTGTTGAACTACCTGGAAAATTGCAAGCATTGGAAAGACTTGAACCCATTGGTGATCACTTCGGAGGTTTAGAAGCTATTTCAGTTGAAACTTTAAATCACACCAATGTAGCGGAAGCGATAATTCAAGTCAAGCGGAACCTCTGTGGTTTTATCCCATCAATGATAGAAATAGCAGATGAGAAATGTGGAACTTTTTTCCTAAATTATGGTGATATTGAAGTTCTTTGTCCTCCTCCAAAAGTCAAAGGAGAATTGTCAAATTTCAATAGAAACCTGTTTGTCTTCATACCAAGAAAATCTCAAGGGAAGTTTCCAGCTTTGTGCTCGCCGGAAAAACCTCCAGTTCAGTCTCAATCGGTGGCCAGTTCATCGGAATTTAATCCTCAATCTAATGTGAACACAGATACGACATTAAAGAGGAAAGAGAAAGCATAA

Coding sequence (CDS)

ATGGGTTGCTCTGTTTTGCCAACCAAGAAACAGAGCACTGCCTCGACCTTCAACCAAATAAGATGCTCCTCCCCTGTTAAGAAGCCCGATGCAGAAGTTGCCTTAATCAAACTGAGTAATGGAAAATTGGAAGAACTTGTTGAACTACCTGGAAAATTGCAAGCATTGGAAAGACTTGAACCCATTGGTGATCACTTCGGAGGTTTAGAAGCTATTTCAGTTGAAACTTTAAATCACACCAATGTAGCGGAAGCGATAATTCAAGTCAAGCGGAACCTCTGTGGTTTTATCCCATCAATGATAGAAATAGCAGATGAGAAATGTGGAACTTTTTTCCTAAATTATGGTGATATTGAAGTTCTTTGTCCTCCTCCAAAAGTCAAAGGAGAATTGTCAAATTTCAATAGAAACCTGTTTGTCTTCATACCAAGAAAATCTCAAGGGAAGTTTCCAGCTTTGTGCTCGCCGGAAAAACCTCCAGTTCAGTCTCAATCGGTGGCCAGTTCATCGGAATTTAATCCTCAATCTAATGTGAACACAGATACGACATTAAAGAGGAAAGAGAAAGCATAA

Protein sequence

MGCSVLPTKKQSTASTFNQIRCSSPVKKPDAEVALIKLSNGKLEELVELPGKLQALERLEPIGDHFGGLEAISVETLNHTNVAEAIIQVKRNLCGFIPSMIEIADEKCGTFFLNYGDIEVLCPPPKVKGELSNFNRNLFVFIPRKSQGKFPALCSPEKPPVQSQSVASSSEFNPQSNVNTDTTLKRKEKA
Homology
BLAST of MELO3C014327 vs. NCBI nr
Match: TYK28792.1 (pseudouridylate synthase 7-like protein isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 211.5 bits (537), Expect = 6.5e-51
Identity = 107/136 (78.68%), Postives = 114/136 (83.82%), Query Frame = 0

Query: 1   MGCSVLPTKKQSTASTFNQIRCSSPVKKPDAEVALIKLSNGKLEELVELPGKLQALE--- 60
           MGCSVLPTKKQ TA TFNQIRCSSPVKKP+AEVALIKLSNGKLEEL+ELPG  QA +   
Sbjct: 478 MGCSVLPTKKQGTALTFNQIRCSSPVKKPEAEVALIKLSNGKLEELIELPGNWQAFDYWC 537

Query: 61  --RLEPIGDHFGGLEAISVETLNHTNVAEAIIQVKRNLCGFIPSMIEIADEKCGTFFLNY 120
               E IGDHF GLEAISVETLN TNV EA IQ+K NLCGF+P+ IEIADE  GTFFLNY
Sbjct: 538 RKTFEAIGDHFEGLEAISVETLNDTNVVEAKIQIKWNLCGFMPATIEIADENRGTFFLNY 597

Query: 121 GDIEVLCPPPKVKGEL 132
           GDIEVLCP PKVKG+L
Sbjct: 598 GDIEVLCPSPKVKGDL 613

BLAST of MELO3C014327 vs. NCBI nr
Match: KAA0057401.1 (hypothetical protein E6C27_scaffold280G002750 [Cucumis melo var. makuwa] >TYK30100.1 hypothetical protein E5676_scaffold216G00800 [Cucumis melo var. makuwa])

HSP 1 Score: 186.4 bits (472), Expect = 2.2e-43
Identity = 113/180 (62.78%), Postives = 125/180 (69.44%), Query Frame = 0

Query: 1   MGCSVLPTKKQSTASTFNQIRCSSPVKKPDAEVALIKLSNGKLEELVELPGKLQALERLE 60
           MGCSVLPTKKQSTASTFNQIRCSSPVKKPD EVALIKLSNGKLEELVELPGKLQAL +  
Sbjct: 1   MGCSVLPTKKQSTASTFNQIRCSSPVKKPD-EVALIKLSNGKLEELVELPGKLQALGKFH 60

Query: 61  PIGDHFGGLEAISVETLNHTNVAEAIIQVKRNLCGFIPSMIEIADEKCGTFFLNYGDIEV 120
                   L+    + + H+     ++     L  +I     + DE+        G+   
Sbjct: 61  --------LKLEKWDKMKHSRQMWCVVMGDGYL--YIRVSQVMKDEE--------GETPE 120

Query: 121 LCPPP---KVKGELSNFNRNLFVFIPRKSQGKFPALCSPEKPPVQSQSVASSSEFNPQSN 178
           + P     K  GELSNFNRNLFVFIPRKSQGKFPALCSPEKPPVQSQSVASSSEFNPQSN
Sbjct: 121 VDPERGFIKDAGELSNFNRNLFVFIPRKSQGKFPALCSPEKPPVQSQSVASSSEFNPQSN 161

BLAST of MELO3C014327 vs. NCBI nr
Match: KAA0041895.1 (uncharacterized protein E6C27_scaffold67G002950 [Cucumis melo var. makuwa])

HSP 1 Score: 97.1 bits (240), Expect = 1.8e-16
Identity = 67/153 (43.79%), Postives = 84/153 (54.90%), Query Frame = 0

Query: 22  CSSPVKKPDAEVALIKLSNGKLEELVELPGKLQALERLEPIGDHFGGLEAISVETLNHTN 81
           CSSPV  PD +VA  K+S      L     K +  E L    DHFGG E+I ++TLN TN
Sbjct: 28  CSSPVALPDTKVA--KVSPCPFSSL--NTEKQKHWENLRGYRDHFGGHESIVMDTLNLTN 87

Query: 82  VAEAIIQVKRNLCGFIPSMIEIADEKCGTFFLNYGDIEVLCPPPKVKGELSNFNRNLFVF 141
             EA IQVK+NLCGF+PS I+I D K G  FLN+GD E L PP    G +          
Sbjct: 88  YNEARIQVKQNLCGFVPSTIQITDPKKGNIFLNFGDFECLKPPFLTVGTIMP-----LFS 147

Query: 142 IPRKSQGK-FPALCSPEKPPVQSQSVASSSEFN 174
           IP+K + K FP+  +P+   V S  V +S   N
Sbjct: 148 IPQKLKLKPFPSEDNPDLLEVCSSKVQTSDSPN 171

BLAST of MELO3C014327 vs. NCBI nr
Match: TYK16775.1 (DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa])

HSP 1 Score: 95.9 bits (237), Expect = 4.0e-16
Identity = 48/86 (55.81%), Postives = 59/86 (68.60%), Query Frame = 0

Query: 62  IGDHFGGLEAISVETLNHTNVAEAIIQVKRNLCGFIPSMIEIADEKCGTFFLNYGDIEVL 121
           IG HFGGLE I+ ET+N  NV+EA IQ K NLCGFIP+ IEI+DE+ G  FLN+G I + 
Sbjct: 189 IGAHFGGLENIAFETINFINVSEAKIQAKENLCGFIPATIEISDEREGNIFLNFGVISLF 248

Query: 122 CPPPKVKGELSNFNRNLFVFIPRKSQ 148
            PP KV G+L   N +  + I R SQ
Sbjct: 249 NPPSKVLGDLFTHNFSNSLDIVRLSQ 274

BLAST of MELO3C014327 vs. NCBI nr
Match: XP_038904899.1 (uncharacterized protein LOC120091119 isoform X2 [Benincasa hispida])

HSP 1 Score: 94.0 bits (232), Expect = 1.5e-15
Identity = 43/83 (51.81%), Postives = 59/83 (71.08%), Query Frame = 0

Query: 49  LPGKLQALERLEPIGDHFGGLEAISVETLNHTNVAEAIIQVKRNLCGFIPSMIEIADEKC 108
           LP      +  E IG +FGGLE+I++E LN   V +AII+VK NLCGF+P+ IE+++EK 
Sbjct: 260 LPLDYWCKQTFEAIGKYFGGLESIAMEILNLIKVLDAIIKVKENLCGFVPATIEVSNEKR 319

Query: 109 GTFFLNYGDIEVLCPPPKVKGEL 132
           G+ +LN+GDI    PP KVKG+L
Sbjct: 320 GSIYLNFGDISTSNPPSKVKGDL 342

BLAST of MELO3C014327 vs. ExPASy TrEMBL
Match: A0A5D3DYX0 (Pseudouridylate synthase 7-like protein isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold403G001570 PE=4 SV=1)

HSP 1 Score: 211.5 bits (537), Expect = 3.2e-51
Identity = 107/136 (78.68%), Postives = 114/136 (83.82%), Query Frame = 0

Query: 1   MGCSVLPTKKQSTASTFNQIRCSSPVKKPDAEVALIKLSNGKLEELVELPGKLQALE--- 60
           MGCSVLPTKKQ TA TFNQIRCSSPVKKP+AEVALIKLSNGKLEEL+ELPG  QA +   
Sbjct: 478 MGCSVLPTKKQGTALTFNQIRCSSPVKKPEAEVALIKLSNGKLEELIELPGNWQAFDYWC 537

Query: 61  --RLEPIGDHFGGLEAISVETLNHTNVAEAIIQVKRNLCGFIPSMIEIADEKCGTFFLNY 120
               E IGDHF GLEAISVETLN TNV EA IQ+K NLCGF+P+ IEIADE  GTFFLNY
Sbjct: 538 RKTFEAIGDHFEGLEAISVETLNDTNVVEAKIQIKWNLCGFMPATIEIADENRGTFFLNY 597

Query: 121 GDIEVLCPPPKVKGEL 132
           GDIEVLCP PKVKG+L
Sbjct: 598 GDIEVLCPSPKVKGDL 613

BLAST of MELO3C014327 vs. ExPASy TrEMBL
Match: A0A5A7UV76 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold216G00800 PE=4 SV=1)

HSP 1 Score: 186.4 bits (472), Expect = 1.1e-43
Identity = 113/180 (62.78%), Postives = 125/180 (69.44%), Query Frame = 0

Query: 1   MGCSVLPTKKQSTASTFNQIRCSSPVKKPDAEVALIKLSNGKLEELVELPGKLQALERLE 60
           MGCSVLPTKKQSTASTFNQIRCSSPVKKPD EVALIKLSNGKLEELVELPGKLQAL +  
Sbjct: 1   MGCSVLPTKKQSTASTFNQIRCSSPVKKPD-EVALIKLSNGKLEELVELPGKLQALGKFH 60

Query: 61  PIGDHFGGLEAISVETLNHTNVAEAIIQVKRNLCGFIPSMIEIADEKCGTFFLNYGDIEV 120
                   L+    + + H+     ++     L  +I     + DE+        G+   
Sbjct: 61  --------LKLEKWDKMKHSRQMWCVVMGDGYL--YIRVSQVMKDEE--------GETPE 120

Query: 121 LCPPP---KVKGELSNFNRNLFVFIPRKSQGKFPALCSPEKPPVQSQSVASSSEFNPQSN 178
           + P     K  GELSNFNRNLFVFIPRKSQGKFPALCSPEKPPVQSQSVASSSEFNPQSN
Sbjct: 121 VDPERGFIKDAGELSNFNRNLFVFIPRKSQGKFPALCSPEKPPVQSQSVASSSEFNPQSN 161

BLAST of MELO3C014327 vs. ExPASy TrEMBL
Match: A0A5A7TKC9 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold67G002950 PE=4 SV=1)

HSP 1 Score: 97.1 bits (240), Expect = 8.7e-17
Identity = 67/153 (43.79%), Postives = 84/153 (54.90%), Query Frame = 0

Query: 22  CSSPVKKPDAEVALIKLSNGKLEELVELPGKLQALERLEPIGDHFGGLEAISVETLNHTN 81
           CSSPV  PD +VA  K+S      L     K +  E L    DHFGG E+I ++TLN TN
Sbjct: 28  CSSPVALPDTKVA--KVSPCPFSSL--NTEKQKHWENLRGYRDHFGGHESIVMDTLNLTN 87

Query: 82  VAEAIIQVKRNLCGFIPSMIEIADEKCGTFFLNYGDIEVLCPPPKVKGELSNFNRNLFVF 141
             EA IQVK+NLCGF+PS I+I D K G  FLN+GD E L PP    G +          
Sbjct: 88  YNEARIQVKQNLCGFVPSTIQITDPKKGNIFLNFGDFECLKPPFLTVGTIMP-----LFS 147

Query: 142 IPRKSQGK-FPALCSPEKPPVQSQSVASSSEFN 174
           IP+K + K FP+  +P+   V S  V +S   N
Sbjct: 148 IPQKLKLKPFPSEDNPDLLEVCSSKVQTSDSPN 171

BLAST of MELO3C014327 vs. ExPASy TrEMBL
Match: A0A5D3CZ35 (DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G00310 PE=4 SV=1)

HSP 1 Score: 95.9 bits (237), Expect = 1.9e-16
Identity = 48/86 (55.81%), Postives = 59/86 (68.60%), Query Frame = 0

Query: 62  IGDHFGGLEAISVETLNHTNVAEAIIQVKRNLCGFIPSMIEIADEKCGTFFLNYGDIEVL 121
           IG HFGGLE I+ ET+N  NV+EA IQ K NLCGFIP+ IEI+DE+ G  FLN+G I + 
Sbjct: 189 IGAHFGGLENIAFETINFINVSEAKIQAKENLCGFIPATIEISDEREGNIFLNFGVISLF 248

Query: 122 CPPPKVKGELSNFNRNLFVFIPRKSQ 148
            PP KV G+L   N +  + I R SQ
Sbjct: 249 NPPSKVLGDLFTHNFSNSLDIVRLSQ 274

BLAST of MELO3C014327 vs. ExPASy TrEMBL
Match: A0A5D3BI91 (Putative 3,4-dihydroxy-2-butanone kinase isoform X5 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold248G00280 PE=4 SV=1)

HSP 1 Score: 91.3 bits (225), Expect = 4.8e-15
Identity = 49/95 (51.58%), Postives = 60/95 (63.16%), Query Frame = 0

Query: 35  LIKLSNGKLEELVELPGKLQALERLEPIGDHFGGLEAISVETLNHTNVAEAIIQVKRNLC 94
           L++   G   ++  LP        LE IGDHF GL  I+ ETLN TNV+EA IQVK+NLC
Sbjct: 211 LVQKGYGGWLKIKNLPLDYWCRSTLEVIGDHFRGLTDIAFETLNLTNVSEARIQVKKNLC 270

Query: 95  GFIPSMIEIADEKCGTFFLNYGDIEVLCP--PPKV 128
           GF+PS IEI D KC   +L++GD E L P  P KV
Sbjct: 271 GFVPSTIEITDLKCRNIYLHFGDFEFLNPTGPSKV 305

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK28792.16.5e-5178.68pseudouridylate synthase 7-like protein isoform X1 [Cucumis melo var. makuwa][more]
KAA0057401.12.2e-4362.78hypothetical protein E6C27_scaffold280G002750 [Cucumis melo var. makuwa] >TYK301... [more]
KAA0041895.11.8e-1643.79uncharacterized protein E6C27_scaffold67G002950 [Cucumis melo var. makuwa][more]
TYK16775.14.0e-1655.81DNA/RNA polymerases superfamily protein [Cucumis melo var. makuwa][more]
XP_038904899.11.5e-1551.81uncharacterized protein LOC120091119 isoform X2 [Benincasa hispida][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3DYX03.2e-5178.68Pseudouridylate synthase 7-like protein isoform X1 OS=Cucumis melo var. makuwa O... [more]
A0A5A7UV761.1e-4362.78Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TKC98.7e-1743.79Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3CZ351.9e-1655.81DNA/RNA polymerases superfamily protein OS=Cucumis melo var. makuwa OX=1194695 G... [more]
A0A5D3BI914.8e-1551.58Putative 3,4-dihydroxy-2-butanone kinase isoform X5 OS=Cucumis melo var. makuwa ... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 153..190
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 158..181

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C014327.1MELO3C014327.1mRNA