MELO3C014264 (gene) Melon (DHL92) v4

Overview


Name	MELO3C014264
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Reverse transcriptase
Location	chr08: 30332595 .. 30333135 (-)
RNA-Seq Expression	MELO3C014264
Synteny	MELO3C014264

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTATTAGAGTGGGATAACGATGAAACCATAAACACCAATATCGATGGAACCAAAATAGAGGAGAACCTCATAGTTGCCACTAGGATCTGCACTGTCGTCGACGCTAGATTCACCGCTGCCATGGAGAATCATCTTTTCTTTCTTGTTAGCTTGCTTCAGGGGGAGAGTGTGAGTGAAGAGCCTAATTGGGTGATTTCTTTAGAGTCTACCAGTCCTACTCTTGTTACCTTACCCATACCTGACCTTAATCCCTATAACAAGGTCTTACCTATGAACCTAGTTCCCTGGATAACCTACAATAGGAGGAATCTCATAAAGAAAGTTACGTCTTCTACTGCTCAGCTGGCTTCGATCCAAGATTCTGAATCATCACGAGATCAAGGTACGACTAATTCTATTGATTCATATTTGACTATAAAGTGGGTGAGAATGACAAGTTGGATATGTTGTTCCCGAAGACATGGGTGAAAAAAATAGTGTTAGTGAAATTAAGGTCATGTCAGAAATGGTAGTTGATGAGGCTAATGAGCCTAAATAG

mRNA sequence

ATGGTATTAGAGTGGGATAACGATGAAACCATAAACACCAATATCGATGGAACCAAAATAGAGGAGAACCTCATAGTTGCCACTAGGATCTGCACTGTCGTCGACGCTAGATTCACCGCTGCCATGGAGAATCATCTTTTCTTTCTTGTTAGCTTGCTTCAGGGGGAGAGTGTGAGTGAAGAGCCTAATTGGGTGATTTCTTTAGAGTCTACCAGTCCTACTCTTGTTACCTTACCCATACCTGACCTTAATCCCTATAACAAGGTCTTACCTATGAACCTAGTTCCCTGGATAACCTACAATAGGAGGAATCTCATAAAGAAAGTTACGTCTTCTACTGCTCAGCTGGCTTCGATCCAAGATTCTGAATCATCACGAGATCAAGACATGGGTGAAAAAAATAGTGTTAGTGAAATTAAGGTCATGTCAGAAATGGTAGTTGATGAGGCTAATGAGCCTAAATAG

Coding sequence (CDS)

ATGGTATTAGAGTGGGATAACGATGAAACCATAAACACCAATATCGATGGAACCAAAATAGAGGAGAACCTCATAGTTGCCACTAGGATCTGCACTGTCGTCGACGCTAGATTCACCGCTGCCATGGAGAATCATCTTTTCTTTCTTGTTAGCTTGCTTCAGGGGGAGAGTGTGAGTGAAGAGCCTAATTGGGTGATTTCTTTAGAGTCTACCAGTCCTACTCTTGTTACCTTACCCATACCTGACCTTAATCCCTATAACAAGGTCTTACCTATGAACCTAGTTCCCTGGATAACCTACAATAGGAGGAATCTCATAAAGAAAGTTACGTCTTCTACTGCTCAGCTGGCTTCGATCCAAGATTCTGAATCATCACGAGATCAAGACATGGGTGAAAAAAATAGTGTTAGTGAAATTAAGGTCATGTCAGAAATGGTAGTTGATGAGGCTAATGAGCCTAAATAG

Protein sequence

MVLEWDNDETINTNIDGTKIEENLIVATRICTVVDARFTAAMENHLFFLVSLLQGESVSEEPNWVISLESTSPTLVTLPIPDLNPYNKVLPMNLVPWITYNRRNLIKKVTSSTAQLASIQDSESSRDQDMGEKNSVSEIKVMSEMVVDEANEPK

Homology

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BLAST of MELO3C014264 vs. NCBI nr
Match: KAA0047302.1 (uncharacterized protein E6C27_scaffold908G001020 [Cucumis melo var. makuwa])

HSP 1 Score: 296.2 bits (757), Expect = 1.6e-76
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MVLEWDNDETINTNIDGTKIEENLIVATRICTVVDARFTAAMENHLFFLVSLLQGESVSE 60
           MVLEWDNDETINTNIDGTKIEENLIVATRICTVVDARFTAAMENHLFFLVSLLQGESVSE
Sbjct: 1   MVLEWDNDETINTNIDGTKIEENLIVATRICTVVDARFTAAMENHLFFLVSLLQGESVSE 60

Query: 61  EPNWVISLESTSPTLVTLPIPDLNPYNKVLPMNLVPWITYNRRNLIKKVTSSTAQLASIQ 120
           EPNWVISLESTSPTLVTLPIPDLNPYNKVLPMNLVPWITYNRRNLIKKVTSSTAQLASIQ
Sbjct: 61  EPNWVISLESTSPTLVTLPIPDLNPYNKVLPMNLVPWITYNRRNLIKKVTSSTAQLASIQ 120

Query: 121 DSESSRDQDMGEKNSVSEIKVMSEMVVDEANEPK 155
           DSESSRDQDMGEKNSVSEIKVMSEMVVDEANEPK
Sbjct: 121 DSESSRDQDMGEKNSVSEIKVMSEMVVDEANEPK 154

[Close]

BLAST of MELO3C014264 vs. NCBI nr
Match: KAA0042444.1 (reverse transcriptase [Cucumis melo var. makuwa] >TYK03506.1 reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 117.9 bits (294), Expect = 8.0e-23
Identity = 66/107 (61.68%), Postives = 81/107 (75.70%), Query Frame = 0


Query: 46  LFFLVSLLQGESVSEEPNWVISLESTSPTLVTLPIPDLNPYNKVLPMNLVPWITYNRRNL 105
           +FFLV LL+G++ +EE ++V+ LESTSPTLVTLP P  NP+N VLP N VPWI Y RRNL
Sbjct: 130 IFFLVGLLKGDTGNEESSYVVPLESTSPTLVTLPNP--NPHNTVLPTNQVPWIAYYRRNL 189

Query: 106 IKKVTSSTAQLASIQDSESSRDQDMGEKNSVSEIKVMSEMVVDEANE 153
            K+V S TAQ   IQDS+ SRDQDMGEK SV EI+VM +   D+A +
Sbjct: 190 KKEVGSPTAQPTPIQDSKQSRDQDMGEKGSVHEIEVMEKTAGDKAKQ 234

[Close]

BLAST of MELO3C014264 vs. NCBI nr
Match: TYK02163.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 106.3 bits (264), Expect = 2.4e-19
Identity = 61/111 (54.95%), Postives = 78/111 (70.27%), Query Frame = 0


Query: 42  MENHLFFLVSLLQGESVSEEPNWVISLESTSPTLVTLPIPDLNPYNKVLPMNLVPWITYN 101
           +E+H FF VS+LQ ESVSEE N V+ LESTSPT VTLP+P+ +PYN VLP N V WITYN
Sbjct: 146 LEDHPFFAVSMLQRESVSEELNCVVPLESTSPTFVTLPLPNRDPYNTVLPTNQVTWITYN 205

Query: 102 RRNLIKKVTSSTAQLASIQDSESSRDQDMGEKNSVSEIKVMSEMVVDEANE 153
           RRNL K+V     Q+     S+ +  +D+ EK +V EI+VM+E   DEA +
Sbjct: 206 RRNLKKEV----GQMGENDRSDIAVLKDISEKGNVHEIEVMAEATGDEAEQ 252

[Close]

BLAST of MELO3C014264 vs. NCBI nr
Match: KAA0035561.1 (Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Cucumis melo var. makuwa] >TYK30973.1 Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Cucumis melo var. makuwa])

HSP 1 Score: 105.5 bits (262), Expect = 4.1e-19
Identity = 64/113 (56.64%), Postives = 76/113 (67.26%), Query Frame = 0


Query: 42  MENHLFFLVSLLQGESVSEEPNWVISLESTSPTLVT--LPIPDLNPYNKVLPMNLVPWIT 101
           +E+H FF VSLLQGESVSEEPN V+ LESTSPTLVT  LP+PDLNP+N VLP N V WI 
Sbjct: 6   LEDHPFFPVSLLQGESVSEEPNCVVPLESTSPTLVTLPLPLPDLNPHNTVLPTNQVLWIA 65

Query: 102 YNRRNLIKKVTSSTAQLASIQDSESSRDQDMGEKNSVSEIKVMSEMVVDEANE 153
           Y RRNLI K             S+    ++MGEK S  EI+VM++   DEA +
Sbjct: 66  YYRRNLISK-------------SDIVVPEEMGEKGSAYEIEVMAKTTGDEAKQ 105

[Close]

BLAST of MELO3C014264 vs. NCBI nr
Match: KAA0047883.1 (reverse transcriptase [Cucumis melo var. makuwa])

HSP 1 Score: 104.4 bits (259), Expect = 9.1e-19
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 0


Query: 42  MENHLFFLVSLLQGESVSEEPNWVISLESTSPTLVTLPIPDLNPYNKVLPMNLVPWITYN 101
           +E+H FF VS+LQ ESVSEE N V+ LESTSPT VTLP+P+ +PYN  LP N + WITYN
Sbjct: 134 LEDHPFFAVSMLQRESVSEELNCVVPLESTSPTFVTLPLPNRDPYNTALPTNQITWITYN 193

Query: 102 RRNLIKKVTSSTAQLASIQDSESSRDQDMGEKNSVSEIKVMSEMVVDEANE 153
           RRNL K+V     Q+     S+ +  +D+ EK +V EI+VM+E   DEA +
Sbjct: 194 RRNLKKEV----GQMGENDRSDIAVLKDISEKGNVHEIEVMAEATGDEAEQ 240

[Close]

BLAST of MELO3C014264 vs. ExPASy TrEMBL
Match: A0A5A7TV20 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G001020 PE=4 SV=1)

HSP 1 Score: 296.2 bits (757), Expect = 7.9e-77
Identity = 154/154 (100.00%), Postives = 154/154 (100.00%), Query Frame = 0


Query: 1   MVLEWDNDETINTNIDGTKIEENLIVATRICTVVDARFTAAMENHLFFLVSLLQGESVSE 60
           MVLEWDNDETINTNIDGTKIEENLIVATRICTVVDARFTAAMENHLFFLVSLLQGESVSE
Sbjct: 1   MVLEWDNDETINTNIDGTKIEENLIVATRICTVVDARFTAAMENHLFFLVSLLQGESVSE 60

Query: 61  EPNWVISLESTSPTLVTLPIPDLNPYNKVLPMNLVPWITYNRRNLIKKVTSSTAQLASIQ 120
           EPNWVISLESTSPTLVTLPIPDLNPYNKVLPMNLVPWITYNRRNLIKKVTSSTAQLASIQ
Sbjct: 61  EPNWVISLESTSPTLVTLPIPDLNPYNKVLPMNLVPWITYNRRNLIKKVTSSTAQLASIQ 120

Query: 121 DSESSRDQDMGEKNSVSEIKVMSEMVVDEANEPK 155
           DSESSRDQDMGEKNSVSEIKVMSEMVVDEANEPK
Sbjct: 121 DSESSRDQDMGEKNSVSEIKVMSEMVVDEANEPK 154

[Close]

BLAST of MELO3C014264 vs. ExPASy TrEMBL
Match: A0A5A7TGA3 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G001270 PE=4 SV=1)

HSP 1 Score: 117.9 bits (294), Expect = 3.9e-23
Identity = 66/107 (61.68%), Postives = 81/107 (75.70%), Query Frame = 0


Query: 46  LFFLVSLLQGESVSEEPNWVISLESTSPTLVTLPIPDLNPYNKVLPMNLVPWITYNRRNL 105
           +FFLV LL+G++ +EE ++V+ LESTSPTLVTLP P  NP+N VLP N VPWI Y RRNL
Sbjct: 130 IFFLVGLLKGDTGNEESSYVVPLESTSPTLVTLPNP--NPHNTVLPTNQVPWIAYYRRNL 189

Query: 106 IKKVTSSTAQLASIQDSESSRDQDMGEKNSVSEIKVMSEMVVDEANE 153
            K+V S TAQ   IQDS+ SRDQDMGEK SV EI+VM +   D+A +
Sbjct: 190 KKEVGSPTAQPTPIQDSKQSRDQDMGEKGSVHEIEVMEKTAGDKAKQ 234

[Close]

BLAST of MELO3C014264 vs. ExPASy TrEMBL
Match: A0A5D3BR59 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold388G00540 PE=4 SV=1)

HSP 1 Score: 106.3 bits (264), Expect = 1.2e-19
Identity = 61/111 (54.95%), Postives = 78/111 (70.27%), Query Frame = 0


Query: 42  MENHLFFLVSLLQGESVSEEPNWVISLESTSPTLVTLPIPDLNPYNKVLPMNLVPWITYN 101
           +E+H FF VS+LQ ESVSEE N V+ LESTSPT VTLP+P+ +PYN VLP N V WITYN
Sbjct: 146 LEDHPFFAVSMLQRESVSEELNCVVPLESTSPTFVTLPLPNRDPYNTVLPTNQVTWITYN 205

Query: 102 RRNLIKKVTSSTAQLASIQDSESSRDQDMGEKNSVSEIKVMSEMVVDEANE 153
           RRNL K+V     Q+     S+ +  +D+ EK +V EI+VM+E   DEA +
Sbjct: 206 RRNLKKEV----GQMGENDRSDIAVLKDISEKGNVHEIEVMAEATGDEAEQ 252

[Close]

BLAST of MELO3C014264 vs. ExPASy TrEMBL
Match: A0A5A7T1V0 (Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G002000 PE=4 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 2.0e-19
Identity = 64/113 (56.64%), Postives = 76/113 (67.26%), Query Frame = 0


Query: 42  MENHLFFLVSLLQGESVSEEPNWVISLESTSPTLVT--LPIPDLNPYNKVLPMNLVPWIT 101
           +E+H FF VSLLQGESVSEEPN V+ LESTSPTLVT  LP+PDLNP+N VLP N V WI 
Sbjct: 6   LEDHPFFPVSLLQGESVSEEPNCVVPLESTSPTLVTLPLPLPDLNPHNTVLPTNQVLWIA 65

Query: 102 YNRRNLIKKVTSSTAQLASIQDSESSRDQDMGEKNSVSEIKVMSEMVVDEANE 153
           Y RRNLI K             S+    ++MGEK S  EI+VM++   DEA +
Sbjct: 66  YYRRNLISK-------------SDIVVPEEMGEKGSAYEIEVMAKTTGDEAKQ 105

[Close]

BLAST of MELO3C014264 vs. ExPASy TrEMBL
Match: A0A5A7TWC5 (Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold133G001560 PE=4 SV=1)

HSP 1 Score: 104.4 bits (259), Expect = 4.4e-19
Identity = 59/111 (53.15%), Postives = 77/111 (69.37%), Query Frame = 0


Query: 42  MENHLFFLVSLLQGESVSEEPNWVISLESTSPTLVTLPIPDLNPYNKVLPMNLVPWITYN 101
           +E+H FF VS+LQ ESVSEE N V+ LESTSPT VTLP+P+ +PYN  LP N + WITYN
Sbjct: 134 LEDHPFFAVSMLQRESVSEELNCVVPLESTSPTFVTLPLPNRDPYNTALPTNQITWITYN 193

Query: 102 RRNLIKKVTSSTAQLASIQDSESSRDQDMGEKNSVSEIKVMSEMVVDEANE 153
           RRNL K+V     Q+     S+ +  +D+ EK +V EI+VM+E   DEA +
Sbjct: 194 RRNLKKEV----GQMGENDRSDIAVLKDISEKGNVHEIEVMAEATGDEAEQ 240

The following BLAST results are available for this feature:

BLAST of MELO3C014264 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0047302.1	1.6e-76	100.00	uncharacterized protein E6C27_scaffold908G001020 [Cucumis melo var. makuwa]	[more]
KAA0042444.1	8.0e-23	61.68	reverse transcriptase [Cucumis melo var. makuwa] >TYK03506.1 reverse transcripta...	[more]
TYK02163.1	2.4e-19	54.95	reverse transcriptase [Cucumis melo var. makuwa]	[more]
KAA0035561.1	4.1e-19	56.64	Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 [Cucumis melo var. makuwa] >T...	[more]
KAA0047883.1	9.1e-19	53.15	reverse transcriptase [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C014264 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C014264 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7TV20	7.9e-77	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TGA3	3.9e-23	61.68	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold12...	[more]
A0A5D3BR59	1.2e-19	54.95	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold38...	[more]
A0A5A7T1V0	2.0e-19	56.64	Cysteine-rich RLK (RECEPTOR-like protein kinase) 8 OS=Cucumis melo var. makuwa O...	[more]
A0A5A7TWC5	4.4e-19	53.15	Reverse transcriptase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold13...	[more]

BLAST of MELO3C014264 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 117..154

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C014264.1	MELO3C014264.1	mRNA