MELO3C014210.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C014210.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	F-box domain-containing protein
Location	chr08: 30319280 .. 30319855 (-)
RNA-Seq Expression	MELO3C014210.jh1
Synteny	MELO3C014210.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

GAGTTTTTATCCTCCTTTTTTTCTTTCTTCATGGTGAATGAATCTCTTTCTTTTTGGCCACCATGGGAAGTGTTGCTTCTTGTTGGTGGATTTCTGGACCCCAAAACCCTTGCCATGGCCGCTTGTGTGTGCAAGTCTTGGTCCATTGCCTTGGCCTCCGACCACCTTTGGGAGCCCATTTTAGCCCATAATTTTCCTTCTCTCTTCAATCGCACCGTATCTTCTACCACCACATCACCACCTCTCTCCTTTTGCCGCCTCTTCGGCCTTGGCCACATTGCCGCCACCCGTTGCTATCTCCCATTTTTTATGGCATCGTCTCGATCCCTCGAAACTCAACCTTGTCGACCTTGTCTTCGTCATCGATATGATCTCCTCCCTTGACAAAGGCAAGAATTGTTGCAAGATAGGTATATAAAAGCAAAAAGATCTTTAGGAGGGAAAGCTCTCTACAAGATAATGGTTTGGTATACGGACATTTTTTTAAGGTTAATTTTCATAAATGTAACAAAACTCTAAAATATTTACGATTCGTATAAAAAAATAAAAAGTCTATGAAATCAGTTATCTTTTAAA

mRNA sequence

GAGTTTTTATCCTCCTTTTTTTCTTTCTTCATGGTGAATGAATCTCTTTCTTTTTGGCCACCATGGGAAGTGTTGCTTCTTGTTGGTGGATTTCTGGACCCCAAAACCCTTGCCATGGCCGCTTGTGTGTGCAAGTCTTGGTCCATTGCCTTGGCCTCCGACCACCTTTGGGAGCCCATTTTAGCCCATAATTTTCCTTCTCTCTTCAATCGCACCGTATCTTCTACCACCACATCACCACCTCTCTCCTTTTGCCGCCTCTTCGGCCTTGGCCACATTGCCGCCACCCGTTGCTATCTCCCATTTTTTATGGCATCGTCTCGATCCCTCGAAACTCAACCTTGTCGACCTTGTCTTCGTCATCGATATGATCTCCTCCCTTGACAAAGGCAAGAATTGTTGCAAGATAGGTATATAAAAGCAAAAAGATCTTTAGGAGGGAAAGCTCTCTACAAGATAATGGTTTGGTATACGGACATTTTTTTAAGGTTAATTTTCATAAATGTAACAAAACTCTAAAATATTTACGATTCGTATAAAAAAATAAAAAGTCTATGAAATCAGTTATCTTTTAAA

Coding sequence (CDS)

ATGGTGAATGAATCTCTTTCTTTTTGGCCACCATGGGAAGTGTTGCTTCTTGTTGGTGGATTTCTGGACCCCAAAACCCTTGCCATGGCCGCTTGTGTGTGCAAGTCTTGGTCCATTGCCTTGGCCTCCGACCACCTTTGGGAGCCCATTTTAGCCCATAATTTTCCTTCTCTCTTCAATCGCACCGTATCTTCTACCACCACATCACCACCTCTCTCCTTTTGCCGCCTCTTCGGCCTTGGCCACATTGCCGCCACCCGTTGCTATCTCCCATTTTTTATGGCATCGTCTCGATCCCTCGAAACTCAACCTTGTCGACCTTGTCTTCGTCATCGATATGATCTCCTCCCTTGA

Protein sequence

MVNESLSFWPPWEVLLLVGGFLDPKTLAMAACVCKSWSIALASDHLWEPILAHNFPSLFNRTVSSTTTSPPLSFCRLFGLGHIAATRCYLPFFMASSRSLETQPCRPCLRHRYDLLP

Homology

[Close]

BLAST of MELO3C014210.jh1 vs. NCBI nr
Match: KAE8649458.1 (hypothetical protein Csa_018875 [Cucumis sativus])

HSP 1 Score: 218 bits (555), Expect = 3.61e-71
Identity = 104/119 (87.39%), Postives = 106/119 (89.08%), Query Frame = 0


Query: 1   MVNESLSFWPPWEVLLLVGGFLDPKTLAMAACVCKSWSIALASDHLWEPILAHNFPSLFN 60
           M NESLSFWPPWEVLLLVGGFLDPKTLAMA+CVCKSW IALASDHLWEPILAHNFPSL N
Sbjct: 1   MANESLSFWPPWEVLLLVGGFLDPKTLAMASCVCKSWFIALASDHLWEPILAHNFPSLLN 60

Query: 61  RTVSSTTTSPPLSFCRLFGLGHIAATRCYLPFFMASSRSLETQP--CRPCLRHRYDLLP 117
           RTVSSTTTSP  SFCRLFGLGH +AT CY P FMASSRSLETQP   R CLRHRYDLLP
Sbjct: 61  RTVSSTTTSPSTSFCRLFGLGHNSATHCYPPLFMASSRSLETQPFLLRHCLRHRYDLLP 119

[Close]

BLAST of MELO3C014210.jh1 vs. NCBI nr
Match: XP_022966422.1 (probable F-box protein At5g04010 [Cucurbita maxima])

HSP 1 Score: 124 bits (312), Expect = 2.89e-32
Identity = 57/78 (73.08%), Postives = 63/78 (80.77%), Query Frame = 0


Query: 10 PPWEVLLLVGGFLDPKTLAMAACVCKSWSIALASDHLWEPILAHNFPSLFNRTVSSTTTS 69
          PPWEVLLLV   LDP+TLA A+CVCKSWSI++AS+HLWEPI +  FPSL N   SS T S
Sbjct: 12 PPWEVLLLVAERLDPRTLATASCVCKSWSISMASNHLWEPIFSAKFPSLTNLAASSATAS 71

Query: 70 PPLSFCRLFGLGHIAATR 87
          PPLSFCRLFGLGH AA R
Sbjct: 72 PPLSFCRLFGLGHTAAAR 89

[Close]

BLAST of MELO3C014210.jh1 vs. NCBI nr
Match: XP_038883618.1 (probable F-box protein At5g04010 [Benincasa hispida])

HSP 1 Score: 121 bits (304), Expect = 4.91e-31
Identity = 60/84 (71.43%), Postives = 66/84 (78.57%), Query Frame = 0


Query: 5  SLSFWPPWEVLLLVGGFLDPKTLAMAACVCKSWSIALASDHLWEPILAHNFPSLFNRTVS 64
          SLS  PPWEVLLLV   LDPKTLA A+CVCK WSI++ASDHLWEPI   NFPSL N  +S
Sbjct: 7  SLSSPPPWEVLLLVAERLDPKTLATASCVCKFWSISMASDHLWEPIFTANFPSLSNLAIS 66

Query: 65 STT-TSPPLSFCRLFGLGHIAATR 87
          S+  TSPP+SF RLFGLGH AA R
Sbjct: 67 SSAPTSPPVSFRRLFGLGHTAAAR 90

[Close]

BLAST of MELO3C014210.jh1 vs. NCBI nr
Match: XP_008449214.1 (PREDICTED: probable F-box protein At5g04010 [Cucumis melo] >KAA0047228.1 putative F-box protein [Cucumis melo var. makuwa] >TYK21759.1 putative F-box protein [Cucumis melo var. makuwa])

HSP 1 Score: 119 bits (298), Expect = 3.68e-30
Identity = 56/78 (71.79%), Postives = 65/78 (83.33%), Query Frame = 0


Query: 10 PPWEVLLLVGGFLDPKTLAMAACVCKSWSIALASDHLWEPILAHNFPSLFNRTVSSTTTS 69
          PPWEV+LLV   LDPKTLA A+CVCKSWS+++ASDHLWEPI   NFPSLFN   S+ T+S
Sbjct: 13 PPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPSLFNLA-SAPTSS 72

Query: 70 PPLSFCRLFGLGHIAATR 87
          PP+SF RLFGLG+IAA R
Sbjct: 73 PPVSFRRLFGLGYIAAAR 89

[Close]

BLAST of MELO3C014210.jh1 vs. NCBI nr
Match: KAG7027654.1 (putative F-box protein, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 118 bits (295), Expect = 7.92e-30
Identity = 55/78 (70.51%), Postives = 63/78 (80.77%), Query Frame = 0


Query: 10 PPWEVLLLVGGFLDPKTLAMAACVCKSWSIALASDHLWEPILAHNFPSLFNRTVSSTTTS 69
          PPWEVLLLV   LDP+TLA A+CVCKSWSI++AS++LWEPI +  FPSL N   SS TTS
Sbjct: 12 PPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSLTNLAASSATTS 71

Query: 70 PPLSFCRLFGLGHIAATR 87
          PP+SF RLFGLGH AA R
Sbjct: 72 PPVSFRRLFGLGHTAAAR 89

[Close]

BLAST of MELO3C014210.jh1 vs. ExPASy Swiss-Prot
Match: Q5EAF6 (Probable F-box protein At5g04010 OS=Arabidopsis thaliana OX=3702 GN=NSFBx PE=2 SV=1)

HSP 1 Score: 58.2 bits (139), Expect = 7.5e-08
Identity = 30/79 (37.97%), Postives = 47/79 (59.49%), Query Frame = 0


Query: 10  PPWEVLLLVGGFLDPKTLAMAACVCKSWSIALASDHLWEPILAHNFPSLFNRTVSSTTTS 69
           P WE+L LVG ++DP++LA+A+CV  +WS   +S+ LW+ + A    S+F + ++     
Sbjct: 53  PSWEILCLVGPYMDPESLAVASCVSTTWSKCFSSEDLWKSLPATRH-SIFAKAITKEGAK 112

Query: 70  PP-LSFCRLFGLGHIAATR 88
           P  LS+ RL      AA R
Sbjct: 113 PAWLSYKRLISEAESAAKR 130

[Close]

BLAST of MELO3C014210.jh1 vs. ExPASy Swiss-Prot
Match: Q9P7W4 (F-box/WD repeat-containing protein pof10 OS=Schizosaccharomyces pombe (strain 972 / ATCC 24843) OX=284812 GN=pof10 PE=1 SV=1)

HSP 1 Score: 46.2 bits (108), Expect = 2.9e-04
Identity = 18/45 (40.00%), Postives = 26/45 (57.78%), Query Frame = 0


Query: 11 PWEVLLLVGGFLDPKTLAMAACVCKSWSIALASDHLWEPILAHNF 56
          P E+L+++  FLDP++L  A C CK W   L+ D  W     H+F
Sbjct: 35 PKEILIIIFSFLDPRSLLSAQCTCKYWKKLLSDDLSWRTAFFHHF 79

[Close]

BLAST of MELO3C014210.jh1 vs. ExPASy TrEMBL
Match: A0A6J1HMX9 (probable F-box protein At5g04010 OS=Cucurbita maxima OX=3661 GN=LOC111466077 PE=4 SV=1)

HSP 1 Score: 124 bits (312), Expect = 1.40e-32
Identity = 57/78 (73.08%), Postives = 63/78 (80.77%), Query Frame = 0


Query: 10 PPWEVLLLVGGFLDPKTLAMAACVCKSWSIALASDHLWEPILAHNFPSLFNRTVSSTTTS 69
          PPWEVLLLV   LDP+TLA A+CVCKSWSI++AS+HLWEPI +  FPSL N   SS T S
Sbjct: 12 PPWEVLLLVAERLDPRTLATASCVCKSWSISMASNHLWEPIFSAKFPSLTNLAASSATAS 71

Query: 70 PPLSFCRLFGLGHIAATR 87
          PPLSFCRLFGLGH AA R
Sbjct: 72 PPLSFCRLFGLGHTAAAR 89

[Close]

BLAST of MELO3C014210.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DEJ6 (Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1721G00070 PE=4 SV=1)

HSP 1 Score: 119 bits (298), Expect = 1.78e-30
Identity = 56/78 (71.79%), Postives = 65/78 (83.33%), Query Frame = 0


Query: 10 PPWEVLLLVGGFLDPKTLAMAACVCKSWSIALASDHLWEPILAHNFPSLFNRTVSSTTTS 69
          PPWEV+LLV   LDPKTLA A+CVCKSWS+++ASDHLWEPI   NFPSLFN   S+ T+S
Sbjct: 13 PPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPSLFNLA-SAPTSS 72

Query: 70 PPLSFCRLFGLGHIAATR 87
          PP+SF RLFGLG+IAA R
Sbjct: 73 PPVSFRRLFGLGYIAAAR 89

[Close]

BLAST of MELO3C014210.jh1 vs. ExPASy TrEMBL
Match: A0A1S3BLJ1 (probable F-box protein At5g04010 OS=Cucumis melo OX=3656 GN=LOC103491161 PE=4 SV=1)

HSP 1 Score: 119 bits (298), Expect = 1.78e-30
Identity = 56/78 (71.79%), Postives = 65/78 (83.33%), Query Frame = 0


Query: 10 PPWEVLLLVGGFLDPKTLAMAACVCKSWSIALASDHLWEPILAHNFPSLFNRTVSSTTTS 69
          PPWEV+LLV   LDPKTLA A+CVCKSWS+++ASDHLWEPI   NFPSLFN   S+ T+S
Sbjct: 13 PPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPSLFNLA-SAPTSS 72

Query: 70 PPLSFCRLFGLGHIAATR 87
          PP+SF RLFGLG+IAA R
Sbjct: 73 PPVSFRRLFGLGYIAAAR 89

[Close]

BLAST of MELO3C014210.jh1 vs. ExPASy TrEMBL
Match: A0A6J1EEG3 (probable F-box protein At5g04010 OS=Cucurbita moschata OX=3662 GN=LOC111432489 PE=4 SV=1)

HSP 1 Score: 118 bits (295), Expect = 4.77e-30
Identity = 55/78 (70.51%), Postives = 63/78 (80.77%), Query Frame = 0


Query: 10 PPWEVLLLVGGFLDPKTLAMAACVCKSWSIALASDHLWEPILAHNFPSLFNRTVSSTTTS 69
          PPWEVLLLV   LDP+TLA A+CVCKSWSI++AS++LWEPI +  FPSL N   SS TTS
Sbjct: 12 PPWEVLLLVAERLDPRTLATASCVCKSWSISMASNNLWEPIFSAKFPSLTNLAASSATTS 71

Query: 70 PPLSFCRLFGLGHIAATR 87
          PP+SF RLFGLGH AA R
Sbjct: 72 PPVSFRRLFGLGHTAAAR 89

[Close]

BLAST of MELO3C014210.jh1 vs. ExPASy TrEMBL
Match: A0A0A0LDE5 (F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G497390 PE=4 SV=1)

HSP 1 Score: 114 bits (285), Expect = 1.56e-28
Identity = 54/78 (69.23%), Postives = 63/78 (80.77%), Query Frame = 0


Query: 10 PPWEVLLLVGGFLDPKTLAMAACVCKSWSIALASDHLWEPILAHNFPSLFNRTVSSTTTS 69
          PPWEV+LLV   LDPKTLA A+CVCKSWS+++ASDHLWEPI   NFPSLFN   ++  TS
Sbjct: 13 PPWEVILLVAERLDPKTLATASCVCKSWSLSMASDHLWEPIFTANFPSLFNLA-TAPATS 72

Query: 70 PPLSFCRLFGLGHIAATR 87
          P +SF RLFGLG+IAA R
Sbjct: 73 PHVSFRRLFGLGYIAAAR 89

[Close]

BLAST of MELO3C014210.jh1 vs. TAIR 10
Match: AT5G04010.1 (F-box family protein )

HSP 1 Score: 58.2 bits (139), Expect = 5.3e-09
Identity = 30/79 (37.97%), Postives = 47/79 (59.49%), Query Frame = 0


Query: 10  PPWEVLLLVGGFLDPKTLAMAACVCKSWSIALASDHLWEPILAHNFPSLFNRTVSSTTTS 69
           P WE+L LVG ++DP++LA+A+CV  +WS   +S+ LW+ + A    S+F + ++     
Sbjct: 53  PSWEILCLVGPYMDPESLAVASCVSTTWSKCFSSEDLWKSLPATRH-SIFAKAITKEGAK 112

Query: 70  PP-LSFCRLFGLGHIAATR 88
           P  LS+ RL      AA R
Sbjct: 113 PAWLSYKRLISEAESAAKR 130

The following BLAST results are available for this feature:

BLAST of MELO3C014210.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
KAE8649458.1	3.61e-71	87.39	hypothetical protein Csa_018875 [Cucumis sativus]	[more]
XP_022966422.1	2.89e-32	73.08	probable F-box protein At5g04010 [Cucurbita maxima]	[more]
XP_038883618.1	4.91e-31	71.43	probable F-box protein At5g04010 [Benincasa hispida]	[more]
XP_008449214.1	3.68e-30	71.79	PREDICTED: probable F-box protein At5g04010 [Cucumis melo] >KAA0047228.1 putativ...	[more]
KAG7027654.1	7.92e-30	70.51	putative F-box protein, partial [Cucurbita argyrosperma subsp. argyrosperma]	[more]

BLAST of MELO3C014210.jh1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q5EAF6	7.5e-08	37.97	Probable F-box protein At5g04010 OS=Arabidopsis thaliana OX=3702 GN=NSFBx PE=2 S...	[more]
Q9P7W4	2.9e-04	40.00	F-box/WD repeat-containing protein pof10 OS=Schizosaccharomyces pombe (strain 97...	[more]

BLAST of MELO3C014210.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1HMX9	1.40e-32	73.08	probable F-box protein At5g04010 OS=Cucurbita maxima OX=3661 GN=LOC111466077 PE=...	[more]
A0A5D3DEJ6	1.78e-30	71.79	Putative F-box protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1...	[more]
A0A1S3BLJ1	1.78e-30	71.79	probable F-box protein At5g04010 OS=Cucumis melo OX=3656 GN=LOC103491161 PE=4 SV...	[more]
A0A6J1EEG3	4.77e-30	70.51	probable F-box protein At5g04010 OS=Cucurbita moschata OX=3662 GN=LOC111432489 P...	[more]
A0A0A0LDE5	1.56e-28	69.23	F-box domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G497390 PE=4 ...	[more]

BLAST of MELO3C014210.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G04010.1	5.3e-09	37.97	F-box family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR001810	F-box domain	PFAM	PF12937	F-box-like	coord: 11..48 e-value: 1.6E-5 score: 24.7
None	No IPR available	GENE3D	1.20.1280.50		coord: 5..111 e-value: 2.3E-8 score: 35.9
None	No IPR available	PANTHER	PTHR12874:SF16	F-BOX PROTEIN	coord: 9..86
IPR045118	F-box only protein FBXO9/FBXO48	PANTHER	PTHR12874	F-BOX ONLY PROTEIN 48-RELATED	coord: 9..86
IPR036047	F-box-like domain superfamily	SUPERFAMILY	81383	F-box domain	coord: 11..63

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C014210.jh1.t1	MELO3C014210.jh1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0031146	SCF-dependent proteasomal ubiquitin-dependent protein catabolic process
cellular_component	GO:0019005	SCF ubiquitin ligase complex
molecular_function	GO:0005515	protein binding