MELO3C014207.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C014207.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionPMD domain-containing protein
Locationchr08: 30276207 .. 30276757 (-)
RNA-Seq ExpressionMELO3C014207.jh1
SyntenyMELO3C014207.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTACTTCACAGAACGATTCTTGTCTGGAGTTCAACACCTCGTAATACTTTCTGATAGAAATCAACCCAGAGAAGATGGACTTAGTCTCATTGTGGAGAAGCCATGGGCTGACGTTTTTGCAGATCATTGGCCACGCTTAGACAACAACTTAGTTCTTTCTAGATTATCCGGGAGATACCTTTGTCTGAGGGAAAAAACGCATGGGTCTTGCAATCTTCTATCCACAATGAGGCTCTTAATTCTGCCAGAGCTCTCACTCTTGGACAACGTTTAATTGAAGGCCAAACACGTTGGGGTACTGTGACCAAGGTCCCTGGAGAGTTTTGCTTTACTGACTGCTACTGGGAGTGGTTGGAGCTTGTAGTTGGTCGAAATACGCGACTTCTTTATAGTACTCGTTTATATGGTGTCGTAACAACTTCTTTATACACTTACGATCGTAACAGTGATGTTGTTCGAGCATTTTGTGAAGCATGGTGTCCTTCGACTAATACTCTTCATACTATGGCAGGCGAGTTATCAACAACACAATGGGTAAGTGATTAG

mRNA sequence

ATGGTTTACTTCACAGAACGATTCTTGTCTGGAGTTCAACACCTCGTAATACTTTCTGATAGAAATCAACCCAGAGAAGATGGACTTAGTCTCATTGTGGAGAAGCCATGGGCTGACGTTTTTGCAGATCATTGGCCACGCTTAGACAACAACTTAGTTCTTTCTAGATTATCCGGGAGATACCTTTGTCTGAGGGAAAAAACGCATGGGTCTTGCAATCTTCTATCCACAATGAGGCTCTTAATTCTGCCAGAGCTCTCACTCTTGGACAACGTTTAATTGAAGGCCAAACACGTTGGGGTACTGTGACCAAGGTCCCTGGAGAGTTTTGCTTTACTGACTGCTACTGGGAGTGGTTGGAGCTTGTAGTTGGTCGAAATACGCGACTTCTTTATAGTACTCGTTTATATGGTGTCGTAACAACTTCTTTATACACTTACGATCGTAACAGTGATGTTGTTCGAGCATTTTGTGAAGCATGGTGTCCTTCGACTAATACTCTTCATACTATGGCAGGCGAGTTATCAACAACACAATGGGTAAGTGATTAG

Coding sequence (CDS)

ATGGTTTACTTCACAGAACGATTCTTGTCTGGAGTTCAACACCTCGTAATACTTTCTGATAGAAATCAACCCAGAGAAGATGGACTTAGTCTCATTGTGGAGAAGCCATGGGCTGACGTTTTTGCAGATCATTGGCCACGCTTAGACAACAACTTAGTTCTTTCTAGATTATCCGGGAGATACCTTTGTCTGAGGGAAAAAACGCATGGGTCTTGCAATCTTCTATCCACAATGAGGCTCTTAATTCTGCCAGAGCTCTCACTCTTGGACAACGTTTAA

Protein sequence

MVYFTERFLSGVQHLVILSDRNQPREDGLSLIVEKPWADVFADHWPRLDNNLVLSRLSGRYLCLREKTHGSCNLLSTMRLLILPELSLLDNV
Homology
BLAST of MELO3C014207.jh1 vs. NCBI nr
Match: KAA0057574.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 113 bits (283), Expect = 6.90e-30
Identity = 53/58 (91.38%), Postives = 54/58 (93.10%), Query Frame = 0

Query: 1  MVYFTERFLSGVQHLVILSDRNQPREDGLSLIVEKPWADVFADHWPRLDNNLVLSRLS 58
          MVYFTERFLSGV+HLVILSDRNQPREDGLSLIVEKPWA  FADHWPRLDNN VL RLS
Sbjct: 17 MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLS 74

BLAST of MELO3C014207.jh1 vs. NCBI nr
Match: KAA0061098.1 (putative mitochondrial protein [Cucumis melo var. makuwa] >TYK03768.1 putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 112 bits (280), Expect = 1.78e-28
Identity = 53/58 (91.38%), Postives = 54/58 (93.10%), Query Frame = 0

Query: 1  MVYFTERFLSGVQHLVILSDRNQPREDGLSLIVEKPWADVFADHWPRLDNNLVLSRLS 58
          MVYFTERFLSGV+HLVILSDRNQ REDGLSLIVEKPWA  FADHWPRLDNN VLSRLS
Sbjct: 1  MVYFTERFLSGVRHLVILSDRNQSREDGLSLIVEKPWAGTFADHWPRLDNNSVLSRLS 58

BLAST of MELO3C014207.jh1 vs. NCBI nr
Match: KAA0053734.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 113 bits (283), Expect = 2.16e-27
Identity = 53/58 (91.38%), Postives = 54/58 (93.10%), Query Frame = 0

Query: 1  MVYFTERFLSGVQHLVILSDRNQPREDGLSLIVEKPWADVFADHWPRLDNNLVLSRLS 58
          MVYFTERFLSGV+HLVILSDRNQPREDGLSLIVEKPWA  FADHWPRLDNN VL RLS
Sbjct: 1  MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLS 58

BLAST of MELO3C014207.jh1 vs. NCBI nr
Match: KAA0048380.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 108 bits (269), Expect = 2.95e-27
Identity = 51/58 (87.93%), Postives = 52/58 (89.66%), Query Frame = 0

Query: 1   MVYFTERFLSGVQHLVILSDRNQPREDGLSLIVEKPWADVFADHWPRLDNNLVLSRLS 58
           MVYFTERFLS V+HLVILSDRNQPREDGLSLIVE PWA  FADHWPRLDNN VL RLS
Sbjct: 60  MVYFTERFLSEVRHLVILSDRNQPREDGLSLIVETPWAGAFADHWPRLDNNSVLPRLS 117

BLAST of MELO3C014207.jh1 vs. NCBI nr
Match: KAA0055892.1 (hypothetical protein E6C27_scaffold438G00100 [Cucumis melo var. makuwa])

HSP 1 Score: 113 bits (283), Expect = 8.01e-27
Identity = 53/58 (91.38%), Postives = 54/58 (93.10%), Query Frame = 0

Query: 1  MVYFTERFLSGVQHLVILSDRNQPREDGLSLIVEKPWADVFADHWPRLDNNLVLSRLS 58
          MVYFTERFLSGV+HLVILSDRNQPREDGLSLIVEKPWA  FADHWPRLDNN VL RLS
Sbjct: 17 MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLS 74

BLAST of MELO3C014207.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UR46 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold497G00460 PE=4 SV=1)

HSP 1 Score: 113 bits (283), Expect = 3.34e-30
Identity = 53/58 (91.38%), Postives = 54/58 (93.10%), Query Frame = 0

Query: 1  MVYFTERFLSGVQHLVILSDRNQPREDGLSLIVEKPWADVFADHWPRLDNNLVLSRLS 58
          MVYFTERFLSGV+HLVILSDRNQPREDGLSLIVEKPWA  FADHWPRLDNN VL RLS
Sbjct: 17 MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLS 74

BLAST of MELO3C014207.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BXQ4 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G001510 PE=4 SV=1)

HSP 1 Score: 112 bits (280), Expect = 8.60e-29
Identity = 53/58 (91.38%), Postives = 54/58 (93.10%), Query Frame = 0

Query: 1  MVYFTERFLSGVQHLVILSDRNQPREDGLSLIVEKPWADVFADHWPRLDNNLVLSRLS 58
          MVYFTERFLSGV+HLVILSDRNQ REDGLSLIVEKPWA  FADHWPRLDNN VLSRLS
Sbjct: 1  MVYFTERFLSGVRHLVILSDRNQSREDGLSLIVEKPWAGTFADHWPRLDNNSVLSRLS 58

BLAST of MELO3C014207.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UET3 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold135G001110 PE=4 SV=1)

HSP 1 Score: 113 bits (283), Expect = 1.05e-27
Identity = 53/58 (91.38%), Postives = 54/58 (93.10%), Query Frame = 0

Query: 1  MVYFTERFLSGVQHLVILSDRNQPREDGLSLIVEKPWADVFADHWPRLDNNLVLSRLS 58
          MVYFTERFLSGV+HLVILSDRNQPREDGLSLIVEKPWA  FADHWPRLDNN VL RLS
Sbjct: 1  MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLS 58

BLAST of MELO3C014207.jh1 vs. ExPASy TrEMBL
Match: A0A5A7TZ08 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold264G00990 PE=4 SV=1)

HSP 1 Score: 108 bits (269), Expect = 1.43e-27
Identity = 51/58 (87.93%), Postives = 52/58 (89.66%), Query Frame = 0

Query: 1   MVYFTERFLSGVQHLVILSDRNQPREDGLSLIVEKPWADVFADHWPRLDNNLVLSRLS 58
           MVYFTERFLS V+HLVILSDRNQPREDGLSLIVE PWA  FADHWPRLDNN VL RLS
Sbjct: 60  MVYFTERFLSEVRHLVILSDRNQPREDGLSLIVETPWAGAFADHWPRLDNNSVLPRLS 117

BLAST of MELO3C014207.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UJ48 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold438G00100 PE=4 SV=1)

HSP 1 Score: 113 bits (283), Expect = 3.88e-27
Identity = 53/58 (91.38%), Postives = 54/58 (93.10%), Query Frame = 0

Query: 1  MVYFTERFLSGVQHLVILSDRNQPREDGLSLIVEKPWADVFADHWPRLDNNLVLSRLS 58
          MVYFTERFLSGV+HLVILSDRNQPREDGLSLIVEKPWA  FADHWPRLDNN VL RLS
Sbjct: 17 MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLS 74

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0057574.16.90e-3091.38putative mitochondrial protein [Cucumis melo var. makuwa][more]
KAA0061098.11.78e-2891.38putative mitochondrial protein [Cucumis melo var. makuwa] >TYK03768.1 putative m... [more]
KAA0053734.12.16e-2791.38putative mitochondrial protein [Cucumis melo var. makuwa][more]
KAA0048380.12.95e-2787.93putative mitochondrial protein [Cucumis melo var. makuwa][more]
KAA0055892.18.01e-2791.38hypothetical protein E6C27_scaffold438G00100 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7UR463.34e-3091.38Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A5D3BXQ48.60e-2991.38Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_s... [more]
A0A5A7UET31.05e-2791.38Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A5A7TZ081.43e-2787.93Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A5A7UJ483.88e-2791.38PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... [more]
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C014207.jh1.t1MELO3C014207.jh1.t1mRNA