MELO3C014207 (gene) Melon (DHL92) v4

Overview
NameMELO3C014207
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionPMD domain-containing protein
Locationchr08: 29754216 .. 29754767 (-)
RNA-Seq ExpressionMELO3C014207
SyntenyMELO3C014207
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGTTTACTTCACAGAACGATTCTTGTCTGGAGTTCGACACCTCGTAATACTTTCTGATAGAAATCAACCCAAAGAAGATGGACTTAGTCTCATTGTGGAGAAGCCATGGGCTGACGCTTTTGCAGATCATTGGCCACGCTTAGACAACAACTCAGTTCTTTCTAGATTATCCGTGGAGATACCTTTGTCTGAGGGAAAAAGCGCACGGGTCTTGCAATCTTCTATCCACAATGAGGCTCTTAATTCTGTCAGAGCTCTCACTCTTGGACAACGTTTAATTGAAGGCCAAACACGTTGGGGTACTGTGACTAAGATCCCTGGAGAGTTCTGCTTTATTGACTGCTACTGGGAGTGGTTGGAGCTTGTAGTTGGTCGAAATACGCGACTTCTTTATAGTACTCGTTTATATGGTGCCATAACAACTTCTTTATACACTTACGATCGTAACAGTGATGTTGTTCGAGCATTTTGTGAAGCATGGTGTCCTTCGACTAATACTCTTCATACTATGGCGGGCGAGTTATCAACAACACAATGGGTAAGTGATTAG

mRNA sequence

ATGGTTTACTTCACAGAACGATTCTTGTCTGGAGTTCGACACCTCGTAATACTTTCTGATAGAAATCAACCCAAAGAAGATGGACTTAGTCTCATTGTGGAGAAGCCATGGGCTGACGCTTTTGCAGATCATTGGCCACGCTTAGACAACAACTCAGTTCTTTCTAGATTATCCGTGGAGATACCTTTGTCTGAGGGAAAAAGCGCACGGGTCTTGCAATCTTCTATCCACAATGAGGCTCTTAATTCTGTCAGAGCTCTCACTCTTGGACAACGTTTAATTGAAGGCCAAACACGTTGGGGTACTGTGACTAAGATCCCTGGAGAGTTCTGCTTTATTGACTGCTACTGGGAGTGGTTGGAGCTTGTAGTTGGTCGAAATACGCGACTTCTTTATAGTACTCGTTTATATGGTGCCATAACAACTTCTTTATACACTTACGATCGTAACAGTGATGTTGTTCGAGCATTTTGTGAAGCATGGTGTCCTTCGACTAATACTCTTCATACTATGGCGGGCGAGTTATCAACAACACAATGGGTAAGTGATTAG

Coding sequence (CDS)

ATGGTTTACTTCACAGAACGATTCTTGTCTGGAGTTCGACACCTCGTAATACTTTCTGATAGAAATCAACCCAAAGAAGATGGACTTAGTCTCATTGTGGAGAAGCCATGGGCTGACGCTTTTGCAGATCATTGGCCACGCTTAGACAACAACTCAGTTCTTTCTAGATTATCCGTGGAGATACCTTTGTCTGAGGGAAAAAGCGCACGGGTCTTGCAATCTTCTATCCACAATGAGGCTCTTAATTCTGTCAGAGCTCTCACTCTTGGACAACGTTTAATTGAAGGCCAAACACGTTGGGGTACTGTGACTAAGATCCCTGGAGAGTTCTGCTTTATTGACTGCTACTGGGAGTGGTTGGAGCTTGTAGTTGGTCGAAATACGCGACTTCTTTATAGTACTCGTTTATATGGTGCCATAACAACTTCTTTATACACTTACGATCGTAACAGTGATGTTGTTCGAGCATTTTGTGAAGCATGGTGTCCTTCGACTAATACTCTTCATACTATGGCGGGCGAGTTATCAACAACACAATGGGTAAGTGATTAG

Protein sequence

MVYFTERFLSGVRHLVILSDRNQPKEDGLSLIVEKPWADAFADHWPRLDNNSVLSRLSVEIPLSEGKSARVLQSSIHNEALNSVRALTLGQRLIEGQTRWGTVTKIPGEFCFIDCYWEWLELVVGRNTRLLYSTRLYGAITTSLYTYDRNSDVVRAFCEAWCPSTNTLHTMAGELSTTQWVSD
Homology
BLAST of MELO3C014207 vs. NCBI nr
Match: KAA0047222.1 (putative mitochondrial protein [Cucumis melo var. makuwa])

HSP 1 Score: 372.1 bits (954), Expect = 2.8e-99
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0

Query: 6   ERFLSGVRHLVILSDRNQPKEDGLSLIVEKPWADAFADHWPRLDNNSVLSRLSVEIPLSE 65
           ERFLSGVRHLVILSDRNQPKEDGLSLIVEKPWADAFADHWPRLDNNSVLSRLSVEIPLSE
Sbjct: 36  ERFLSGVRHLVILSDRNQPKEDGLSLIVEKPWADAFADHWPRLDNNSVLSRLSVEIPLSE 95

Query: 66  GKSARVLQSSIHNEALNSVRALTLGQRLIEGQTRWGTVTKIPGEFCFIDCYWEWLELVVG 125
           GKSARVLQSSIHNEALNSVRALTLGQRLIEGQTRWGTVTKIPGEFCFIDCYWEWLELVVG
Sbjct: 96  GKSARVLQSSIHNEALNSVRALTLGQRLIEGQTRWGTVTKIPGEFCFIDCYWEWLELVVG 155

Query: 126 RNTRLLYSTRLYGAITTSLYTYDRNSDVVRAFCEAWCPSTNTLHTMAGELSTTQWVSD 184
           RNTRLLYSTRLYGAITTSLYTYDRNSDVVRAFCEAWCPSTNTLHTMAGELSTTQWVSD
Sbjct: 156 RNTRLLYSTRLYGAITTSLYTYDRNSDVVRAFCEAWCPSTNTLHTMAGELSTTQWVSD 213

BLAST of MELO3C014207 vs. NCBI nr
Match: KAA0047478.1 (hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa])

HSP 1 Score: 350.9 bits (899), Expect = 6.6e-93
Identity = 166/180 (92.22%), Postives = 171/180 (95.00%), Query Frame = 0

Query: 1   MVYFTERFLSGVRHLVILSDRNQPKEDGLSLIVEKPWADAFADHWPRLDNNSVLSRLSVE 60
           MVYFTERFLSGVRHLVILSDRNQP+EDGLSLIVEKPWA AFADHWPRLDNNSVL RLSVE
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLSVE 60

Query: 61  IPLSEGKSARVLQSSIHNEALNSVRALTLGQRLIEGQTRWGTVTKIPGEFCFIDCYWEWL 120
           +PLSEGKSA VLQSSIHNEA NS RALTLGQRLIEGQTRWGTVTK+PGEFCF DCYWEWL
Sbjct: 61  VPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWEWL 120

Query: 121 ELVVGRNTRLLYSTRLYGAITTSLYTYDRNSDVVRAFCEAWCPSTNTLHTMAGELSTTQW 180
           ELVVGRNTRLLYSTRLYGA+T SLYTYDRNSDVVRAFCEAWCPSTNTLHTMAGELS + W
Sbjct: 121 ELVVGRNTRLLYSTRLYGAVTASLYTYDRNSDVVRAFCEAWCPSTNTLHTMAGELSISLW 180

BLAST of MELO3C014207 vs. NCBI nr
Match: KAA0065375.1 (hypothetical protein E6C27_scaffold17G00370 [Cucumis melo var. makuwa])

HSP 1 Score: 345.9 bits (886), Expect = 2.1e-91
Identity = 164/180 (91.11%), Postives = 170/180 (94.44%), Query Frame = 0

Query: 1   MVYFTERFLSGVRHLVILSDRNQPKEDGLSLIVEKPWADAFADHWPRLDNNSVLSRLSVE 60
           MVYFTERFLSGVRHLVILSDRNQP+EDGLSLIVEKPWA AFADHWPRLDNNSVL RLSVE
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLSVE 60

Query: 61  IPLSEGKSARVLQSSIHNEALNSVRALTLGQRLIEGQTRWGTVTKIPGEFCFIDCYWEWL 120
           IPLSEGKSA +LQSSIH+EA NS RALTLGQRLIEGQTRWGTVTK+P EFCF DCYWEWL
Sbjct: 61  IPLSEGKSAWILQSSIHHEAPNSGRALTLGQRLIEGQTRWGTVTKVPREFCFTDCYWEWL 120

Query: 121 ELVVGRNTRLLYSTRLYGAITTSLYTYDRNSDVVRAFCEAWCPSTNTLHTMAGELSTTQW 180
           ELVVGRNTRLLYSTRLYGA+T SLYTYDRNSDVVRAFCEAWCPSTNTLHTMAGELS + W
Sbjct: 121 ELVVGRNTRLLYSTRLYGAVTASLYTYDRNSDVVRAFCEAWCPSTNTLHTMAGELSISLW 180

BLAST of MELO3C014207 vs. NCBI nr
Match: KAA0050516.1 (hypothetical protein E6C27_scaffold175G001600 [Cucumis melo var. makuwa])

HSP 1 Score: 345.1 bits (884), Expect = 3.6e-91
Identity = 163/180 (90.56%), Postives = 170/180 (94.44%), Query Frame = 0

Query: 1   MVYFTERFLSGVRHLVILSDRNQPKEDGLSLIVEKPWADAFADHWPRLDNNSVLSRLSVE 60
           MVYFTERFLSGVRHLVILSDRNQP+EDGLSLI+EKPWA AFADHWPRLDNNSVL RLSVE
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIMEKPWAGAFADHWPRLDNNSVLPRLSVE 60

Query: 61  IPLSEGKSARVLQSSIHNEALNSVRALTLGQRLIEGQTRWGTVTKIPGEFCFIDCYWEWL 120
           IPLSEGKSA +LQSSIHNEA NS RALTLGQRLIEGQTRWGT+TK+PGEFCF DCYWEWL
Sbjct: 61  IPLSEGKSAWILQSSIHNEAPNSGRALTLGQRLIEGQTRWGTMTKVPGEFCFTDCYWEWL 120

Query: 121 ELVVGRNTRLLYSTRLYGAITTSLYTYDRNSDVVRAFCEAWCPSTNTLHTMAGELSTTQW 180
           ELVVGRNTRLLYSTRLYG +TTSLYTYDRNSDVVRAF EAWCPSTNTLHTMAGELS + W
Sbjct: 121 ELVVGRNTRLLYSTRLYGTVTTSLYTYDRNSDVVRAFSEAWCPSTNTLHTMAGELSISLW 180

BLAST of MELO3C014207 vs. NCBI nr
Match: TYK19639.1 (hypothetical protein E5676_scaffold242G00260 [Cucumis melo var. makuwa])

HSP 1 Score: 341.3 bits (874), Expect = 5.3e-90
Identity = 162/180 (90.00%), Postives = 167/180 (92.78%), Query Frame = 0

Query: 1   MVYFTERFLSGVRHLVILSDRNQPKEDGLSLIVEKPWADAFADHWPRLDNNSVLSRLSVE 60
           MVYFTERFLSGVRHLVILSDRNQP+EDGLSLIVEK WA AFADHWPRLDNNSVL RLSVE
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKLWAGAFADHWPRLDNNSVLPRLSVE 60

Query: 61  IPLSEGKSARVLQSSIHNEALNSVRALTLGQRLIEGQTRWGTVTKIPGEFCFIDCYWEWL 120
           +PLSEGKSA VLQSSIHNEA NS RALTLGQRLIEGQTRWGTVTK+PGEFCF DCYWEWL
Sbjct: 61  VPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWEWL 120

Query: 121 ELVVGRNTRLLYSTRLYGAITTSLYTYDRNSDVVRAFCEAWCPSTNTLHTMAGELSTTQW 180
           ELVVGRNTRLLYST LY  +T SLYTYDRNSDVVRAFCEAWCPSTNTLHTMAGELS + W
Sbjct: 121 ELVVGRNTRLLYSTHLYSVVTASLYTYDRNSDVVRAFCEAWCPSTNTLHTMAGELSISLW 180

BLAST of MELO3C014207 vs. ExPASy TrEMBL
Match: A0A5A7TUT6 (Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold908G00110 PE=4 SV=1)

HSP 1 Score: 372.1 bits (954), Expect = 1.3e-99
Identity = 178/178 (100.00%), Postives = 178/178 (100.00%), Query Frame = 0

Query: 6   ERFLSGVRHLVILSDRNQPKEDGLSLIVEKPWADAFADHWPRLDNNSVLSRLSVEIPLSE 65
           ERFLSGVRHLVILSDRNQPKEDGLSLIVEKPWADAFADHWPRLDNNSVLSRLSVEIPLSE
Sbjct: 36  ERFLSGVRHLVILSDRNQPKEDGLSLIVEKPWADAFADHWPRLDNNSVLSRLSVEIPLSE 95

Query: 66  GKSARVLQSSIHNEALNSVRALTLGQRLIEGQTRWGTVTKIPGEFCFIDCYWEWLELVVG 125
           GKSARVLQSSIHNEALNSVRALTLGQRLIEGQTRWGTVTKIPGEFCFIDCYWEWLELVVG
Sbjct: 96  GKSARVLQSSIHNEALNSVRALTLGQRLIEGQTRWGTVTKIPGEFCFIDCYWEWLELVVG 155

Query: 126 RNTRLLYSTRLYGAITTSLYTYDRNSDVVRAFCEAWCPSTNTLHTMAGELSTTQWVSD 184
           RNTRLLYSTRLYGAITTSLYTYDRNSDVVRAFCEAWCPSTNTLHTMAGELSTTQWVSD
Sbjct: 156 RNTRLLYSTRLYGAITTSLYTYDRNSDVVRAFCEAWCPSTNTLHTMAGELSTTQWVSD 213

BLAST of MELO3C014207 vs. ExPASy TrEMBL
Match: A0A5A7TX42 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold498G00950 PE=4 SV=1)

HSP 1 Score: 350.9 bits (899), Expect = 3.2e-93
Identity = 166/180 (92.22%), Postives = 171/180 (95.00%), Query Frame = 0

Query: 1   MVYFTERFLSGVRHLVILSDRNQPKEDGLSLIVEKPWADAFADHWPRLDNNSVLSRLSVE 60
           MVYFTERFLSGVRHLVILSDRNQP+EDGLSLIVEKPWA AFADHWPRLDNNSVL RLSVE
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLSVE 60

Query: 61  IPLSEGKSARVLQSSIHNEALNSVRALTLGQRLIEGQTRWGTVTKIPGEFCFIDCYWEWL 120
           +PLSEGKSA VLQSSIHNEA NS RALTLGQRLIEGQTRWGTVTK+PGEFCF DCYWEWL
Sbjct: 61  VPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWEWL 120

Query: 121 ELVVGRNTRLLYSTRLYGAITTSLYTYDRNSDVVRAFCEAWCPSTNTLHTMAGELSTTQW 180
           ELVVGRNTRLLYSTRLYGA+T SLYTYDRNSDVVRAFCEAWCPSTNTLHTMAGELS + W
Sbjct: 121 ELVVGRNTRLLYSTRLYGAVTASLYTYDRNSDVVRAFCEAWCPSTNTLHTMAGELSISLW 180

BLAST of MELO3C014207 vs. ExPASy TrEMBL
Match: A0A5A7VHW8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold17G00370 PE=4 SV=1)

HSP 1 Score: 345.9 bits (886), Expect = 1.0e-91
Identity = 164/180 (91.11%), Postives = 170/180 (94.44%), Query Frame = 0

Query: 1   MVYFTERFLSGVRHLVILSDRNQPKEDGLSLIVEKPWADAFADHWPRLDNNSVLSRLSVE 60
           MVYFTERFLSGVRHLVILSDRNQP+EDGLSLIVEKPWA AFADHWPRLDNNSVL RLSVE
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKPWAGAFADHWPRLDNNSVLPRLSVE 60

Query: 61  IPLSEGKSARVLQSSIHNEALNSVRALTLGQRLIEGQTRWGTVTKIPGEFCFIDCYWEWL 120
           IPLSEGKSA +LQSSIH+EA NS RALTLGQRLIEGQTRWGTVTK+P EFCF DCYWEWL
Sbjct: 61  IPLSEGKSAWILQSSIHHEAPNSGRALTLGQRLIEGQTRWGTVTKVPREFCFTDCYWEWL 120

Query: 121 ELVVGRNTRLLYSTRLYGAITTSLYTYDRNSDVVRAFCEAWCPSTNTLHTMAGELSTTQW 180
           ELVVGRNTRLLYSTRLYGA+T SLYTYDRNSDVVRAFCEAWCPSTNTLHTMAGELS + W
Sbjct: 121 ELVVGRNTRLLYSTRLYGAVTASLYTYDRNSDVVRAFCEAWCPSTNTLHTMAGELSISLW 180

BLAST of MELO3C014207 vs. ExPASy TrEMBL
Match: A0A5A7U8L3 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold175G001600 PE=4 SV=1)

HSP 1 Score: 345.1 bits (884), Expect = 1.8e-91
Identity = 163/180 (90.56%), Postives = 170/180 (94.44%), Query Frame = 0

Query: 1   MVYFTERFLSGVRHLVILSDRNQPKEDGLSLIVEKPWADAFADHWPRLDNNSVLSRLSVE 60
           MVYFTERFLSGVRHLVILSDRNQP+EDGLSLI+EKPWA AFADHWPRLDNNSVL RLSVE
Sbjct: 1   MVYFTERFLSGVRHLVILSDRNQPREDGLSLIMEKPWAGAFADHWPRLDNNSVLPRLSVE 60

Query: 61  IPLSEGKSARVLQSSIHNEALNSVRALTLGQRLIEGQTRWGTVTKIPGEFCFIDCYWEWL 120
           IPLSEGKSA +LQSSIHNEA NS RALTLGQRLIEGQTRWGT+TK+PGEFCF DCYWEWL
Sbjct: 61  IPLSEGKSAWILQSSIHNEAPNSGRALTLGQRLIEGQTRWGTMTKVPGEFCFTDCYWEWL 120

Query: 121 ELVVGRNTRLLYSTRLYGAITTSLYTYDRNSDVVRAFCEAWCPSTNTLHTMAGELSTTQW 180
           ELVVGRNTRLLYSTRLYG +TTSLYTYDRNSDVVRAF EAWCPSTNTLHTMAGELS + W
Sbjct: 121 ELVVGRNTRLLYSTRLYGTVTTSLYTYDRNSDVVRAFSEAWCPSTNTLHTMAGELSISLW 180

BLAST of MELO3C014207 vs. ExPASy TrEMBL
Match: A0A5A7TFC8 (PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold93G00910 PE=4 SV=1)

HSP 1 Score: 341.3 bits (874), Expect = 2.5e-90
Identity = 162/180 (90.00%), Postives = 167/180 (92.78%), Query Frame = 0

Query: 1   MVYFTERFLSGVRHLVILSDRNQPKEDGLSLIVEKPWADAFADHWPRLDNNSVLSRLSVE 60
           MVYFTERFLSGVRHLVILSDRNQP+EDGLSLIVEK WA AFADHWPRLDNNSVL RLSVE
Sbjct: 17  MVYFTERFLSGVRHLVILSDRNQPREDGLSLIVEKLWAGAFADHWPRLDNNSVLPRLSVE 76

Query: 61  IPLSEGKSARVLQSSIHNEALNSVRALTLGQRLIEGQTRWGTVTKIPGEFCFIDCYWEWL 120
           +PLSEGKSA VLQSSIHNEA NS RALTLGQRLIEGQTRWGTVTK+PGEFCF DCYWEWL
Sbjct: 77  VPLSEGKSAWVLQSSIHNEAPNSGRALTLGQRLIEGQTRWGTVTKVPGEFCFTDCYWEWL 136

Query: 121 ELVVGRNTRLLYSTRLYGAITTSLYTYDRNSDVVRAFCEAWCPSTNTLHTMAGELSTTQW 180
           ELVVGRNTRLLYST LY  +T SLYTYDRNSDVVRAFCEAWCPSTNTLHTMAGELS + W
Sbjct: 137 ELVVGRNTRLLYSTHLYSVVTASLYTYDRNSDVVRAFCEAWCPSTNTLHTMAGELSISLW 196

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0047222.12.8e-99100.00putative mitochondrial protein [Cucumis melo var. makuwa][more]
KAA0047478.16.6e-9392.22hypothetical protein E6C27_scaffold498G00950 [Cucumis melo var. makuwa][more]
KAA0065375.12.1e-9191.11hypothetical protein E6C27_scaffold17G00370 [Cucumis melo var. makuwa][more]
KAA0050516.13.6e-9190.56hypothetical protein E6C27_scaffold175G001600 [Cucumis melo var. makuwa][more]
TYK19639.15.3e-9090.00hypothetical protein E5676_scaffold242G00260 [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7TUT61.3e-99100.00Putative mitochondrial protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s... [more]
A0A5A7TX423.2e-9392.22Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7VHW81.0e-9191.11PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... [more]
A0A5A7U8L31.8e-9190.56PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... [more]
A0A5A7TFC82.5e-9090.00PMD domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_sc... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR366071,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 4coord: 29..180
NoneNo IPR availablePANTHERPTHR36607:SF201,2-DIHYDROXY-3-KETO-5-METHYLTHIOPENTENE DIOXYGENASE 4coord: 29..180

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C014207.1MELO3C014207.1mRNA