MELO3C014159 (gene) Melon (DHL92) v4

Overview
NameMELO3C014159
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionGlycine-rich cell wall structural protein-like
Locationchr06: 35543893 .. 35544733 (-)
RNA-Seq ExpressionMELO3C014159
SyntenyMELO3C014159
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSthree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTTCCAAGATTGTCTTTCTTGTGTTTCTTGGTGCTTTTCTCTTCACCACTTCTGGGGCTCGCAAGTTGAGTACTGCCTCTTTTCAAGATGAGAAGTTCTTCCACCGTCCCAGATATGGAGGTGGGGGATTGGGCGGAGGCGGTGGTGGAGGGTTCGGTGGAGGCGGAGGCGGAGGGTTAGGTGGTGGTTCGGGAGGTGGTTTTGGTGGAGGATCTGGATTTGGTGGCGGTGTTGGTGGTGGAGCTGGTGGTGGTGGTGGAGGAGGATTTGGTGGTGGAGGTGGTGGTGGACTAGGCGGAGGGAGTGGTTTTGGAGGTGGAGCAGGGTTCGGAGGAGGCTCCGGTGGAGGAGGAGGACTTGGTGGTGGTGGTGGTGCTGGCGGTGGAGGAGGGTTTGGTGGCGGAGGTGGAGGTGGACTTGGGGGCGGAGCAGGCGGAGGGTTCGGCAGTGGCGCCGGTACAGGAGGTGGATTCCCTTGAAGGATATGATATTTGTACTACCAAAGGAGAACAAAAAAGTGTCTTTAAGAAACCCCATCTCATATCATAGTTTTTGGTATATTATATTATAGTTTTTGCATGTGCAATAATGTGGTTTGGCGTTTGTTGTTCTAAAATTAGAATTAGGTTTCATATGTGGAAAAACTCTCTTTTTAGCTCACAATTTCTTATATTTCTAATTGTAATTTCCAAGAAATTAAAAGAGAATAAATTATTTCTAAGAAAAAAACTCTCAATCTCAATTCTCACACATGAGTTAATTAATGGATGAAGGTTAATGAGAATATACTTTTGTACTATAATAAATAATTTCATATCTCTTCGGACCTAGATTATA

mRNA sequence

ATGGCTTCCAAGATTGTCTTTCTTGTGTTTCTTGGATTTGGTGGTGGAGGTGGTGGTGGACTAGGCGGAGGGAGTGGTTTTGGAGGTGGAGCAGGGTTCGGAGGAGGCTCCGGTGGAGGAGGAGGACTTGGTGGTGGTGGTGGTGCTGGCGGTGGAGGAGGGTTTGGTGGCGGAGGTGGAGGTGGACTTGGGGGCGGAGCAGGCGGAGGGTTCGGCAGTGGCGCCGGTACAGGAGGTGGATTCCCTTGAAGGATATGATATTTGTACTACCAAAGGAGAACAAAAAAGTGTCTTTAAGAAACCCCATCTCATATCATAGTTTTTGGTATATTATATTATAGTTTTTGCATGTGCAATAATGTGGTTTGGCGTTTGTTGTTCTAAAATTAGAATTAGGTTTCATATGTGGAAAAACTCTCTTTTTAGCTCACAATTTCTTATATTTCTAATTGTAATTTCCAAGAAATTAAAAGAGAATAAATTATTTCTAAGAAAAAAACTCTCAATCTCAATTCTCACACATGAGTTAATTAATGGATGAAGGTTAATGAGAATATACTTTTGTACTATAATAAATAATTTCATATCTCTTCGGACCTAGATTATA

Coding sequence (CDS)

ATGGCTTCCAAGATTGTCTTTCTTGTGTTTCTTGGATTTGGTGGTGGAGGTGGTGGTGGACTAGGCGGAGGGAGTGGTTTTGGAGGTGGAGCAGGGTTCGGAGGAGGCTCCGGTGGAGGAGGAGGACTTGGTGGTGGTGGTGGTGCTGGCGGTGGAGGAGGGTTTGGTGGCGGAGGTGGAGGTGGACTTGGGGGCGGAGCAGGCGGAGGGTTCGGCAGTGGCGCCGGTACAGGAGGTGGATTCCCTTGA

Protein sequence

MASKIVFLVFLGFGGGGGGGLGGGSGFGGGAGFGGGSGGGGGLGGGGGAGGGGGFGGGGGGGLGGGAGGGFGSGAGTGGGFP
Homology
[Close]
BLAST of MELO3C014159 vs. NCBI nr
Match: KAA0065825.1 (glycine-rich cell wall structural protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 60.8 bits (146), Expect = 6.1e-06
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 12  GFGGGGGGGLGGGSGFGGGAGFGGGSGGGGGLGGGGGAGGGGGFGGGGGGGLGGGAGGGF 71
           GFGGGGGGGLGGGSGFGGGAGFGGGSGGGGGLGGGGGAGGGGGFGGGGGGGLGGGAGGGF
Sbjct: 90  GFGGGGGGGLGGGSGFGGGAGFGGGSGGGGGLGGGGGAGGGGGFGGGGGGGLGGGAGGGF 149

Query: 72  GSGAGTGGGFP 83
           GSGAGTGGGFP
Sbjct: 150 GSGAGTGGGFP 160

[Close]
BLAST of MELO3C014159 vs. NCBI nr
Match: XP_008449198.1 (PREDICTED: glycine-rich cell wall structural protein 1 [Cucumis melo])

HSP 1 Score: 57.0 bits (136), Expect = 8.9e-05
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0 

Query: 13 FGGGGGGGLGGGSGFGGGAGFGGGSGGGGGLGGGGGAGGGGGFGGGGGGGLGGGAGGGFG 72
          FGGGGGGGLGGGSGFGGGAGFGGGSGGGGGLGGGGGAGGGGGFGGGGGGGLGGGAGGGFG
Sbjct: 7  FGGGGGGGLGGGSGFGGGAGFGGGSGGGGGLGGGGGAGGGGGFGGGGGGGLGGGAGGGFG 66

Query: 73 SGAGTGGGF 82
          SGAGTGGGF
Sbjct: 67 SGAGTGGGF 75

[Close]
BLAST of MELO3C014159 vs. ExPASy TrEMBL
Match: A0A5A7VJD1 (Glycine-rich cell wall structural protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold37G001320 PE=4 SV=1)

HSP 1 Score: 60.8 bits (146), Expect = 3.0e-06
Identity = 71/71 (100.00%), Postives = 71/71 (100.00%), Query Frame = 0 

Query: 12  GFGGGGGGGLGGGSGFGGGAGFGGGSGGGGGLGGGGGAGGGGGFGGGGGGGLGGGAGGGF 71
           GFGGGGGGGLGGGSGFGGGAGFGGGSGGGGGLGGGGGAGGGGGFGGGGGGGLGGGAGGGF
Sbjct: 90  GFGGGGGGGLGGGSGFGGGAGFGGGSGGGGGLGGGGGAGGGGGFGGGGGGGLGGGAGGGF 149

Query: 72  GSGAGTGGGFP 83
           GSGAGTGGGFP
Sbjct: 150 GSGAGTGGGFP 160

[Close]
BLAST of MELO3C014159 vs. ExPASy TrEMBL
Match: A0A1S3BLI1 (glycine-rich cell wall structural protein 1 OS=Cucumis melo OX=3656 GN=LOC103491148 PE=4 SV=1)

HSP 1 Score: 57.0 bits (136), Expect = 4.3e-05
Identity = 69/69 (100.00%), Postives = 69/69 (100.00%), Query Frame = 0 

Query: 13 FGGGGGGGLGGGSGFGGGAGFGGGSGGGGGLGGGGGAGGGGGFGGGGGGGLGGGAGGGFG 72
          FGGGGGGGLGGGSGFGGGAGFGGGSGGGGGLGGGGGAGGGGGFGGGGGGGLGGGAGGGFG
Sbjct: 7  FGGGGGGGLGGGSGFGGGAGFGGGSGGGGGLGGGGGAGGGGGFGGGGGGGLGGGAGGGFG 66

Query: 73 SGAGTGGGF 82
          SGAGTGGGF
Sbjct: 67 SGAGTGGGF 75

The following BLAST results are available for this feature:
BLAST of MELO3C014159 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0065825.16.1e-06100.00glycine-rich cell wall structural protein-like [Cucumis melo var. makuwa][more]
XP_008449198.18.9e-05100.00PREDICTED: glycine-rich cell wall structural protein 1 [Cucumis melo][more]
BLAST of MELO3C014159 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C014159 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7VJD13.0e-06100.00Glycine-rich cell wall structural protein-like OS=Cucumis melo var. makuwa OX=11... [more]
A0A1S3BLI14.3e-05100.00glycine-rich cell wall structural protein 1 OS=Cucumis melo OX=3656 GN=LOC103491... [more]
BLAST of MELO3C014159 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C014159.1MELO3C014159.1mRNA