MELO3C014106 (gene) Melon (DHL92) v4

Overview
NameMELO3C014106
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionProtein TIC 20
Locationchr06: 34823257 .. 34824160 (+)
RNA-Seq ExpressionMELO3C014106
SyntenyMELO3C014106
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ACGATTGGATTTCAAAATCCATTTCTTCACAACTTCAATGGCGTTTCTTATCTTAAATCTCTCTCCCAAAACCCTCCATTCTTCCTTCTTCCCCTCCCCATTTCCCGCTCTCTCAAACCCCAAAACAACCACCCTCAATTTCACCACCACTCTGCGACGGCGAGGGCGAGGGCGACGACGCATATTCACCGTCCGATCCACTGGCGACAACAACAACAACTCTGCCGATGGCCCCGACCGCCTCATCTCCGCCATCTGCTACTTCTACCCCTTCTTCGACGGCGTCCAGTACGGCAAGTACGTTATCACTCAGTACACTCCATTTCAGGTTCTGATTCAACCTTTAGTTCCGGCAATTCGTGTTTTCAAGAGCTTTCCGTTGAATAGCTTTTTGGTGTTTTTAACTCTTTACTTCGTCGTGGTTAGAAACCCTAATTTCAGTCGGTATGTTAGATTCAATATTATGCAAGCCATTGTTCTCGATGTGCTTCTGATTTTCCCCGATCTTTTGGAGAGGAGCTTTAATCCTAGAGGGGGAATAGGGTTGGATTTAGTGATGAGTTTGGATAGTACTGTGTTCTTGTTTCTTTTGATTTGTTTGATTTATGGGTCTTCTTCTTGCTTGTTGGGTCAAATCCCTCGATTGCCCATTGTTGCTGATGCTGCTGATAGACAAGTTATGTGAATTTTTTTTTTCTTCACTTCTTTGAAAATGGATCAGTTTAACTATTGTTCTTGCTGATTTTGTTGGGTGGGGGAAAGTTGGATGGGAATTCTCAAATTCTTGTTCATTTGGGGGAAACCTAGTTGTAGATTAATTATGTGTTTCTAAATTTCTACACACTTATGAGGATGAAATAATTAAAGAAAAATCGAAGTTAGAAATGATATTCAATGTTAATTG

mRNA sequence

ACGATTGGATTTCAAAATCCATTTCTTCACAACTTCAATGGCGTTTCTTATCTTAAATCTCTCTCCCAAAACCCTCCATTCTTCCTTCTTCCCCTCCCCATTTCCCGCTCTCTCAAACCCCAAAACAACCACCCTCAATTTCACCACCACTCTGCGACGGCGAGGGCGAGGGCGACGACGCATATTCACCGTCCGATCCACTGGCGACAACAACAACAACTCTGCCGATGGCCCCGACCGCCTCATCTCCGCCATCTGCTACTTCTACCCCTTCTTCGACGGCGTCCAGTACGGCAAGTACGTTATCACTCAGTACACTCCATTTCAGGTTCTGATTCAACCTTTAGTTCCGGCAATTCGTGTTTTCAAGAGCTTTCCGTTGAATAGCTTTTTGGTGTTTTTAACTCTTTACTTCGTCGTGGTTAGAAACCCTAATTTCAGTCGGTATGTTAGATTCAATATTATGCAAGCCATTGTTCTCGATGTGCTTCTGATTTTCCCCGATCTTTTGGAGAGGAGCTTTAATCCTAGAGGGGGAATAGGGTTGGATTTAGTGATGAGTTTGGATAGTACTGTGTTCTTGTTTCTTTTGATTTGTTTGATTTATGGGTCTTCTTCTTGCTTGTTGGGTCAAATCCCTCGATTGCCCATTGTTGCTGATGCTGCTGATAGACAAGTTATGTGAATTTTTTTTTTCTTCACTTCTTTGAAAATGGATCAGTTTAACTATTGTTCTTGCTGATTTTGTTGGGTGGGGGAAAGTTGGATGGGAATTCTCAAATTCTTGTTCATTTGGGGGAAACCTAGTTGTAGATTAATTATGTGTTTCTAAATTTCTACACACTTATGAGGATGAAATAATTAAAGAAAAATCGAAGTTAGAAATGATATTCAATGTTAATTG

Coding sequence (CDS)

ATGGCGTTTCTTATCTTAAATCTCTCTCCCAAAACCCTCCATTCTTCCTTCTTCCCCTCCCCATTTCCCGCTCTCTCAAACCCCAAAACAACCACCCTCAATTTCACCACCACTCTGCGACGGCGAGGGCGAGGGCGACGACGCATATTCACCGTCCGATCCACTGGCGACAACAACAACAACTCTGCCGATGGCCCCGACCGCCTCATCTCCGCCATCTGCTACTTCTACCCCTTCTTCGACGGCGTCCAGTACGGCAAGTACGTTATCACTCAGTACACTCCATTTCAGGTTCTGATTCAACCTTTAGTTCCGGCAATTCGTGTTTTCAAGAGCTTTCCGTTGAATAGCTTTTTGGTGTTTTTAACTCTTTACTTCGTCGTGGTTAGAAACCCTAATTTCAGTCGGTATGTTAGATTCAATATTATGCAAGCCATTGTTCTCGATGTGCTTCTGATTTTCCCCGATCTTTTGGAGAGGAGCTTTAATCCTAGAGGGGGAATAGGGTTGGATTTAGTGATGAGTTTGGATAGTACTGTGTTCTTGTTTCTTTTGATTTGTTTGATTTATGGGTCTTCTTCTTGCTTGTTGGGTCAAATCCCTCGATTGCCCATTGTTGCTGATGCTGCTGATAGACAAGTTATGTGA

Protein sequence

MAFLILNLSPKTLHSSFFPSPFPALSNPKTTTLNFTTTLRRRGRGRRRIFTVRSTGDNNNNSADGPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSFPLNSFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGIGLDLVMSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM
Homology
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BLAST of MELO3C014106 vs. NCBI nr
Match: XP_008449034.1 (PREDICTED: protein TIC 20-v, chloroplastic [Cucumis melo] >KAA0065731.1 protein TIC 20-v [Cucumis melo var. makuwa] >TYK13757.1 protein TIC 20-v [Cucumis melo var. makuwa])

HSP 1 Score: 418.7 bits (1075), Expect = 3.0e-113
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0 

Query: 1   MAFLILNLSPKTLHSSFFPSPFPALSNPKTTTLNFTTTLRRRGRGRRRIFTVRSTGDNNN 60
           MAFLILNLSPKTLHSSFFPSPFPALSNPKTTTLNFTTTLRRRGRGRRRIFTVRSTGDNNN
Sbjct: 1   MAFLILNLSPKTLHSSFFPSPFPALSNPKTTTLNFTTTLRRRGRGRRRIFTVRSTGDNNN 60

Query: 61  NSADGPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSFPLNSFLV 120
           NSADGPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSFPLNSFLV
Sbjct: 61  NSADGPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSFPLNSFLV 120

Query: 121 FLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGIGLDLVMSLDSTV 180
           FLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGIGLDLVMSLDSTV
Sbjct: 121 FLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGIGLDLVMSLDSTV 180

Query: 181 FLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM 216
           FLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM
Sbjct: 181 FLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM 215

[Close]
BLAST of MELO3C014106 vs. NCBI nr
Match: XP_038905184.1 (protein TIC 20-v, chloroplastic [Benincasa hispida])

HSP 1 Score: 375.6 bits (963), Expect = 3.0e-100
Identity = 200/216 (92.59%), Postives = 204/216 (94.44%), Query Frame = 0 

Query: 1   MAFLILNLSPKTLHSSFFPSPFPALSNPKTTTLNFTTTLRRRGRGRRRIFTVRSTGDNNN 60
           MA LILNLSPKTL+SSFFPSPFP+LSNP  T +NFT TL RR   RRRI TVRSTGDNNN
Sbjct: 1   MAMLILNLSPKTLYSSFFPSPFPSLSNP--TQINFTATLPRR---RRRILTVRSTGDNNN 60

Query: 61  -NSADGPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSFPLNSFL 120
            NSADGPDRLISAICYFYPFFDGVQYGKYVITQY PFQVLIQPLVPAIRVFKSFPLNSFL
Sbjct: 61  SNSADGPDRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKSFPLNSFL 120

Query: 121 VFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGIGLDLVMSLDST 180
           VFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGG+GLDLVMSLDST
Sbjct: 121 VFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDST 180

Query: 181 VFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM 216
           VFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM
Sbjct: 181 VFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM 211

[Close]
BLAST of MELO3C014106 vs. NCBI nr
Match: XP_004148263.1 (protein TIC 20-v, chloroplastic [Cucumis sativus])

HSP 1 Score: 375.6 bits (963), Expect = 3.0e-100
Identity = 201/216 (93.06%), Postives = 202/216 (93.52%), Query Frame = 0 

Query: 1   MAFLILNLSPKTLHSSFFPSPFPALSNPKTTTLNFTTTLRRRGRGRRRIFTVRSTG-DNN 60
           MAFLILNLSPKT HS FFPS    LSNPKTTTLNFTTTL RR   R RI TVRSTG DNN
Sbjct: 1   MAFLILNLSPKTPHSPFFPS----LSNPKTTTLNFTTTLPRRWLARPRILTVRSTGDDNN 60

Query: 61  NNSADGPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSFPLNSFL 120
           NNSAD PDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSFPLNSFL
Sbjct: 61  NNSADAPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSFPLNSFL 120

Query: 121 VFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGIGLDLVMSLDST 180
           VFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGG+GLDLVMSLDST
Sbjct: 121 VFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDST 180

Query: 181 VFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM 216
           VFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM
Sbjct: 181 VFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM 212

[Close]
BLAST of MELO3C014106 vs. NCBI nr
Match: XP_023553383.1 (protein TIC 20-v, chloroplastic [Cucurbita pepo subsp. pepo])

HSP 1 Score: 372.1 bits (954), Expect = 3.3e-99
Identity = 195/222 (87.84%), Postives = 203/222 (91.44%), Query Frame = 0 

Query: 1   MAFLILNLSPKTLHSSFFPSPFPALSNPKTTT-------LNFTTTLRRRGRGRRRIFTVR 60
           MA LILNLSPKTLHSSFFPSPFP+LSNP+TT        +NFTT  RRR   RRRI TVR
Sbjct: 22  MATLILNLSPKTLHSSFFPSPFPSLSNPRTTATTTLTNQINFTTLRRRR---RRRILTVR 81

Query: 61  STGDNNNNSADGPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSF 120
           S+GD +NN+ADGPDRLISAICYFYPFFDGVQYGKYVITQY PFQVLIQPLVPAIRVFKSF
Sbjct: 82  SSGDRDNNTADGPDRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKSF 141

Query: 121 PLNSFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGIGLDLV 180
           P N FLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGG+GLDLV
Sbjct: 142 PFNGFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLV 201

Query: 181 MSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM 216
           MSLDSTVFLFLLICLIYGSSSCLLGQ+PRLPIVADAADRQVM
Sbjct: 202 MSLDSTVFLFLLICLIYGSSSCLLGQVPRLPIVADAADRQVM 240

[Close]
BLAST of MELO3C014106 vs. NCBI nr
Match: XP_022932396.1 (protein TIC 20-v, chloroplastic [Cucurbita moschata])

HSP 1 Score: 371.7 bits (953), Expect = 4.3e-99
Identity = 195/223 (87.44%), Postives = 203/223 (91.03%), Query Frame = 0 

Query: 1   MAFLILNLSPKTLHSSFFPSPFPALSNPKTTT--------LNFTTTLRRRGRGRRRIFTV 60
           MA LILNLSPKTLHSSFFPSPFP+LSNP+TT         +NFTT  RRR   RRRI TV
Sbjct: 23  MATLILNLSPKTLHSSFFPSPFPSLSNPRTTAATTTLTNQINFTTLRRRR---RRRILTV 82

Query: 61  RSTGDNNNNSADGPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKS 120
           RS+GD +NN+ADGPDRLISAICYFYPFFDGVQYGKYVITQY PFQVLIQPLVPAIRVFKS
Sbjct: 83  RSSGDRDNNTADGPDRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKS 142

Query: 121 FPLNSFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGIGLDL 180
           FP N FLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGG+GLDL
Sbjct: 143 FPFNGFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDL 202

Query: 181 VMSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM 216
           VMSLDSTVFLFLLICLIYGSSSCLLGQ+PRLPIVADAADRQVM
Sbjct: 203 VMSLDSTVFLFLLICLIYGSSSCLLGQVPRLPIVADAADRQVM 242

[Close]
BLAST of MELO3C014106 vs. ExPASy Swiss-Prot
Match: Q9FM67 (Protein TIC 20-v, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-V PE=2 SV=1)

HSP 1 Score: 262.3 bits (669), Expect = 4.8e-69
Identity = 141/209 (67.46%), Postives = 161/209 (77.03%), Query Frame = 0 

Query: 15  SSFFPSPFPALSNPKTTT------LNFTTTL--RRRGRGRRRIFTVRSTGDNNNNSADGP 74
           S FF +P P+L+   T T      LN  T     R  R R     ++S GD   +S D  
Sbjct: 5   SQFF-APLPSLTGTLTLTGRSFLPLNLDTQFPKPRLSRDRAATLVLQSKGD---DSVDAS 64

Query: 75  DRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSFPLNSFLVFLTLYF 134
           DR+ISA+CYFYPFFDG+QYGK++ITQY PFQ+LIQPL PAIR FKSFP N FL+F+TLYF
Sbjct: 65  DRIISAVCYFYPFFDGIQYGKFIITQYQPFQILIQPLFPAIRAFKSFPFNGFLIFITLYF 124

Query: 135 VVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGIGLDLVMSLDSTVFLFLLI 194
           VVVRNPNFSRYVRFN MQAIVLDVLLIFPDLLERSFNPR G GLD+VMSLDSTVFLFLL+
Sbjct: 125 VVVRNPNFSRYVRFNTMQAIVLDVLLIFPDLLERSFNPRDGFGLDVVMSLDSTVFLFLLV 184

Query: 195 CLIYGSSSCLLGQIPRLPIVADAADRQVM 216
            LIYG S+CL G  PRLP+VA+AADRQV+
Sbjct: 185 SLIYGFSACLFGLTPRLPLVAEAADRQVL 209

[Close]
BLAST of MELO3C014106 vs. ExPASy Swiss-Prot
Match: O82251 (Protein TIC 20-II, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-II PE=2 SV=1)

HSP 1 Score: 129.4 bits (324), Expect = 4.8e-29
Identity = 85/217 (39.17%), Postives = 121/217 (55.76%), Query Frame = 0 

Query: 1   MAFLILNLSPKTLHSSFFPSPFP-ALSNPKTTTLNFTTTLRRRGRGRRRIFTVRSTGDNN 60
           MA L L+L     +    P   P +LS P ++T +   + R     R    T R+    +
Sbjct: 1   MASLCLSLHQTLTNPLSAPRCRPLSLSFPGSSTFSIRPSSR-----RATALTTRA----S 60

Query: 61  NNSADGPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSFPLNSFL 120
                  +R+IS   Y  PFF+ +QYG+++  QY    +L +P+ P + +++S P  SF+
Sbjct: 61  YTPTPATERVISIASYALPFFNSLQYGRFLFAQYPRLGLLFEPIFPILNLYRSVPYASFV 120

Query: 121 VFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNP--RGGIGLDLVMSLD 180
            F  LY  VVRN +FSRYVRFN MQA+ LDVLL  P LL R  +P   GG G+  +M   
Sbjct: 121 AFFGLYLGVVRNTSFSRYVRFNAMQAVTLDVLLAVPVLLTRILDPGQGGGFGMKAMMWGH 180

Query: 181 STVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQV 215
           + VF+F  +C +YG  S LLG+ P +P VADAA RQ+
Sbjct: 181 TGVFVFSFMCFVYGVVSSLLGKTPYIPFVADAAGRQL 208

[Close]
BLAST of MELO3C014106 vs. ExPASy Swiss-Prot
Match: P73387 (Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=sll1737 PE=3 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.2e-21
Identity = 56/157 (35.67%), Postives = 93/157 (59.24%), Query Frame = 0 

Query: 59  NNNSADGPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSFPLNSF 118
           +N++ADG DR  SA+ Y  P  D   +G +++ Q+   Q++  P++P ++ +  FP  SF
Sbjct: 3   SNSTADGKDRFFSALIYVIPLIDAFMFGGFLLQQFPVLQIIYLPIMPLLQFYYQFPFASF 62

Query: 119 LVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLL-IFPDLLERSFNPRGGIGLDLVMSLD 178
           ++F+ L+  VVRN N S ++RFN MQAI++ +LL +F  ++     P  G GL +  +L 
Sbjct: 63  IIFIVLFMAVVRNNNISHFIRFNAMQAILIGILLSLFGLIVAYVIQPVFGQGL-VTETLY 122

Query: 179 STVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQV 215
           +  FL  L C  +G    +LG+   +P ++DAA  QV
Sbjct: 123 NFAFLGALACGFFGIVQSVLGRYAEIPTISDAAYSQV 158

[Close]
BLAST of MELO3C014106 vs. ExPASy TrEMBL
Match: A0A5D3CPD4 (Protein TIC 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00160 PE=3 SV=1)

HSP 1 Score: 418.7 bits (1075), Expect = 1.5e-113
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0 

Query: 1   MAFLILNLSPKTLHSSFFPSPFPALSNPKTTTLNFTTTLRRRGRGRRRIFTVRSTGDNNN 60
           MAFLILNLSPKTLHSSFFPSPFPALSNPKTTTLNFTTTLRRRGRGRRRIFTVRSTGDNNN
Sbjct: 1   MAFLILNLSPKTLHSSFFPSPFPALSNPKTTTLNFTTTLRRRGRGRRRIFTVRSTGDNNN 60

Query: 61  NSADGPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSFPLNSFLV 120
           NSADGPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSFPLNSFLV
Sbjct: 61  NSADGPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSFPLNSFLV 120

Query: 121 FLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGIGLDLVMSLDSTV 180
           FLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGIGLDLVMSLDSTV
Sbjct: 121 FLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGIGLDLVMSLDSTV 180

Query: 181 FLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM 216
           FLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM
Sbjct: 181 FLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM 215

[Close]
BLAST of MELO3C014106 vs. ExPASy TrEMBL
Match: A0A1S3BM16 (Protein TIC 20 OS=Cucumis melo OX=3656 GN=LOC103491027 PE=3 SV=1)

HSP 1 Score: 418.7 bits (1075), Expect = 1.5e-113
Identity = 215/215 (100.00%), Postives = 215/215 (100.00%), Query Frame = 0 

Query: 1   MAFLILNLSPKTLHSSFFPSPFPALSNPKTTTLNFTTTLRRRGRGRRRIFTVRSTGDNNN 60
           MAFLILNLSPKTLHSSFFPSPFPALSNPKTTTLNFTTTLRRRGRGRRRIFTVRSTGDNNN
Sbjct: 1   MAFLILNLSPKTLHSSFFPSPFPALSNPKTTTLNFTTTLRRRGRGRRRIFTVRSTGDNNN 60

Query: 61  NSADGPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSFPLNSFLV 120
           NSADGPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSFPLNSFLV
Sbjct: 61  NSADGPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSFPLNSFLV 120

Query: 121 FLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGIGLDLVMSLDSTV 180
           FLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGIGLDLVMSLDSTV
Sbjct: 121 FLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGIGLDLVMSLDSTV 180

Query: 181 FLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM 216
           FLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM
Sbjct: 181 FLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM 215

[Close]
BLAST of MELO3C014106 vs. ExPASy TrEMBL
Match: A0A0A0L632 (Protein TIC 20 OS=Cucumis sativus OX=3659 GN=Csa_3G047830 PE=3 SV=1)

HSP 1 Score: 375.6 bits (963), Expect = 1.4e-100
Identity = 201/216 (93.06%), Postives = 202/216 (93.52%), Query Frame = 0 

Query: 1   MAFLILNLSPKTLHSSFFPSPFPALSNPKTTTLNFTTTLRRRGRGRRRIFTVRSTG-DNN 60
           MAFLILNLSPKT HS FFPS    LSNPKTTTLNFTTTL RR   R RI TVRSTG DNN
Sbjct: 1   MAFLILNLSPKTPHSPFFPS----LSNPKTTTLNFTTTLPRRWLARPRILTVRSTGDDNN 60

Query: 61  NNSADGPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSFPLNSFL 120
           NNSAD PDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSFPLNSFL
Sbjct: 61  NNSADAPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSFPLNSFL 120

Query: 121 VFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGIGLDLVMSLDST 180
           VFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGG+GLDLVMSLDST
Sbjct: 121 VFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLVMSLDST 180

Query: 181 VFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM 216
           VFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM
Sbjct: 181 VFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM 212

[Close]
BLAST of MELO3C014106 vs. ExPASy TrEMBL
Match: A0A6J1EW92 (Protein TIC 20 OS=Cucurbita moschata OX=3662 GN=LOC111438760 PE=3 SV=1)

HSP 1 Score: 371.7 bits (953), Expect = 2.1e-99
Identity = 195/223 (87.44%), Postives = 203/223 (91.03%), Query Frame = 0 

Query: 1   MAFLILNLSPKTLHSSFFPSPFPALSNPKTTT--------LNFTTTLRRRGRGRRRIFTV 60
           MA LILNLSPKTLHSSFFPSPFP+LSNP+TT         +NFTT  RRR   RRRI TV
Sbjct: 23  MATLILNLSPKTLHSSFFPSPFPSLSNPRTTAATTTLTNQINFTTLRRRR---RRRILTV 82

Query: 61  RSTGDNNNNSADGPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKS 120
           RS+GD +NN+ADGPDRLISAICYFYPFFDGVQYGKYVITQY PFQVLIQPLVPAIRVFKS
Sbjct: 83  RSSGDRDNNTADGPDRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKS 142

Query: 121 FPLNSFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGIGLDL 180
           FP N FLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGG+GLDL
Sbjct: 143 FPFNGFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDL 202

Query: 181 VMSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM 216
           VMSLDSTVFLFLLICLIYGSSSCLLGQ+PRLPIVADAADRQVM
Sbjct: 203 VMSLDSTVFLFLLICLIYGSSSCLLGQVPRLPIVADAADRQVM 242

[Close]
BLAST of MELO3C014106 vs. ExPASy TrEMBL
Match: A0A6J1HN42 (Protein TIC 20 OS=Cucurbita maxima OX=3661 GN=LOC111465112 PE=3 SV=1)

HSP 1 Score: 369.0 bits (946), Expect = 1.3e-98
Identity = 194/222 (87.39%), Postives = 202/222 (90.99%), Query Frame = 0 

Query: 1   MAFLILNLSPKTLHSSFFPSPFPALSNPKTTT-------LNFTTTLRRRGRGRRRIFTVR 60
           MA LILNLSPKTL SSFFPSPFP+LSNP+TT        +NFTT  RRR   RRRI TVR
Sbjct: 1   MATLILNLSPKTLRSSFFPSPFPSLSNPRTTATTTLTNQINFTTLRRRR---RRRILTVR 60

Query: 61  STGDNNNNSADGPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSF 120
           S+GD +NN+ADGPDRLISAICYFYPFFDGVQYGKYVITQY PFQVLIQPLVPAIRVFKSF
Sbjct: 61  SSGDRDNNTADGPDRLISAICYFYPFFDGVQYGKYVITQYAPFQVLIQPLVPAIRVFKSF 120

Query: 121 PLNSFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGIGLDLV 180
           P N FLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGG+GLDLV
Sbjct: 121 PFNGFLVFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGLGLDLV 180

Query: 181 MSLDSTVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQVM 216
           MSLDSTVFLFLLICLIYGSSSCLLGQ+PRLPIVADAADRQVM
Sbjct: 181 MSLDSTVFLFLLICLIYGSSSCLLGQVPRLPIVADAADRQVM 219

[Close]
BLAST of MELO3C014106 vs. TAIR 10
Match: AT5G55710.1 (FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: chloroplast thylakoid membrane, chloroplast; EXPRESSED IN: 23 plant structures; EXPRESSED DURING: 14 growth stages; BEST Arabidopsis thaliana protein match is: Uncharacterised conserved protein ycf60 (TAIR:AT2G47840.1); Has 1807 Blast hits to 1807 proteins in 277 species: Archae - 0; Bacteria - 0; Metazoa - 736; Fungi - 347; Plants - 385; Viruses - 0; Other Eukaryotes - 339 (source: NCBI BLink). )

HSP 1 Score: 262.3 bits (669), Expect = 3.4e-70
Identity = 141/209 (67.46%), Postives = 161/209 (77.03%), Query Frame = 0 

Query: 15  SSFFPSPFPALSNPKTTT------LNFTTTL--RRRGRGRRRIFTVRSTGDNNNNSADGP 74
           S FF +P P+L+   T T      LN  T     R  R R     ++S GD   +S D  
Sbjct: 5   SQFF-APLPSLTGTLTLTGRSFLPLNLDTQFPKPRLSRDRAATLVLQSKGD---DSVDAS 64

Query: 75  DRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSFPLNSFLVFLTLYF 134
           DR+ISA+CYFYPFFDG+QYGK++ITQY PFQ+LIQPL PAIR FKSFP N FL+F+TLYF
Sbjct: 65  DRIISAVCYFYPFFDGIQYGKFIITQYQPFQILIQPLFPAIRAFKSFPFNGFLIFITLYF 124

Query: 135 VVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNPRGGIGLDLVMSLDSTVFLFLLI 194
           VVVRNPNFSRYVRFN MQAIVLDVLLIFPDLLERSFNPR G GLD+VMSLDSTVFLFLL+
Sbjct: 125 VVVRNPNFSRYVRFNTMQAIVLDVLLIFPDLLERSFNPRDGFGLDVVMSLDSTVFLFLLV 184

Query: 195 CLIYGSSSCLLGQIPRLPIVADAADRQVM 216
            LIYG S+CL G  PRLP+VA+AADRQV+
Sbjct: 185 SLIYGFSACLFGLTPRLPLVAEAADRQVL 209

[Close]
BLAST of MELO3C014106 vs. TAIR 10
Match: AT2G47840.1 (Uncharacterised conserved protein ycf60 )

HSP 1 Score: 129.4 bits (324), Expect = 3.4e-30
Identity = 85/217 (39.17%), Postives = 121/217 (55.76%), Query Frame = 0 

Query: 1   MAFLILNLSPKTLHSSFFPSPFP-ALSNPKTTTLNFTTTLRRRGRGRRRIFTVRSTGDNN 60
           MA L L+L     +    P   P +LS P ++T +   + R     R    T R+    +
Sbjct: 1   MASLCLSLHQTLTNPLSAPRCRPLSLSFPGSSTFSIRPSSR-----RATALTTRA----S 60

Query: 61  NNSADGPDRLISAICYFYPFFDGVQYGKYVITQYTPFQVLIQPLVPAIRVFKSFPLNSFL 120
                  +R+IS   Y  PFF+ +QYG+++  QY    +L +P+ P + +++S P  SF+
Sbjct: 61  YTPTPATERVISIASYALPFFNSLQYGRFLFAQYPRLGLLFEPIFPILNLYRSVPYASFV 120

Query: 121 VFLTLYFVVVRNPNFSRYVRFNIMQAIVLDVLLIFPDLLERSFNP--RGGIGLDLVMSLD 180
            F  LY  VVRN +FSRYVRFN MQA+ LDVLL  P LL R  +P   GG G+  +M   
Sbjct: 121 AFFGLYLGVVRNTSFSRYVRFNAMQAVTLDVLLAVPVLLTRILDPGQGGGFGMKAMMWGH 180

Query: 181 STVFLFLLICLIYGSSSCLLGQIPRLPIVADAADRQV 215
           + VF+F  +C +YG  S LLG+ P +P VADAA RQ+
Sbjct: 181 TGVFVFSFMCFVYGVVSSLLGKTPYIPFVADAAGRQL 208

The following BLAST results are available for this feature:
BLAST of MELO3C014106 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008449034.13.0e-113100.00PREDICTED: protein TIC 20-v, chloroplastic [Cucumis melo] >KAA0065731.1 protein ... [more]
XP_038905184.13.0e-10092.59protein TIC 20-v, chloroplastic [Benincasa hispida][more]
XP_004148263.13.0e-10093.06protein TIC 20-v, chloroplastic [Cucumis sativus][more]
XP_023553383.13.3e-9987.84protein TIC 20-v, chloroplastic [Cucurbita pepo subsp. pepo][more]
XP_022932396.14.3e-9987.44protein TIC 20-v, chloroplastic [Cucurbita moschata][more]
BLAST of MELO3C014106 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q9FM674.8e-6967.46Protein TIC 20-v, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-V PE=2 ... [more]
O822514.8e-2939.17Protein TIC 20-II, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=TIC20-II PE=... [more]
P733872.2e-2135.67Tic20 family protein OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 ... [more]
BLAST of MELO3C014106 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5D3CPD41.5e-113100.00Protein TIC 20 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold488G00160... [more]
A0A1S3BM161.5e-113100.00Protein TIC 20 OS=Cucumis melo OX=3656 GN=LOC103491027 PE=3 SV=1[more]
A0A0A0L6321.4e-10093.06Protein TIC 20 OS=Cucumis sativus OX=3659 GN=Csa_3G047830 PE=3 SV=1[more]
A0A6J1EW922.1e-9987.44Protein TIC 20 OS=Cucurbita moschata OX=3662 GN=LOC111438760 PE=3 SV=1[more]
A0A6J1HN421.3e-9887.39Protein TIC 20 OS=Cucurbita maxima OX=3661 GN=LOC111465112 PE=3 SV=1[more]
BLAST of MELO3C014106 vs. TAIR 10
Match NameE-valueIdentityDescription
AT5G55710.13.4e-7067.46FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknow... [more]
AT2G47840.13.4e-3039.17Uncharacterised conserved protein ycf60 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR005691Chloroplast protein import component Tic20PFAMPF16166TIC20coord: 68..210
e-value: 2.2E-54
score: 184.0
IPR005691Chloroplast protein import component Tic20PANTHERPTHR33510PROTEIN TIC 20-II, CHLOROPLASTICcoord: 28..215
NoneNo IPR availablePANTHERPTHR33510:SF11PROTEIN TIC 20-V, CHLOROPLASTICcoord: 28..215

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C014106.1MELO3C014106.1mRNA