MELO3C014101 (gene) Melon (DHL92) v4

Overview


Name	MELO3C014101
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Ribonuclease H
Location	chr06: 34771931 .. 34772161 (+)
RNA-Seq Expression	MELO3C014101
Synteny	MELO3C014101

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGATTTGATTGATTTAATCGGATTTGAGAGAGGAGGAGGAGTCGAGGTCGTGGTGGCCGGCGACATAGCTGAGGAGACCTTCGGCGGCTTTATCAGGTGGCGGAAGGGAGGTGTTGGCGAAGAGGAGAACGGCGAGAAGGAAGAGAGCAGTGGAGAGGAAGAGTGGCCAGAAGTAAGCGAGAAGGGAGAGGAAACTTGGAGCAAGGAGGAAGAGGGAGAAGAGAGTTAG

mRNA sequence

ATGGATTTGATTGATTTAATCGGATTTGAGAGAGGAGGAGGAGTCGAGGTCGTGGTGGCCGGCGACATAGCTGAGGAGACCTTCGGCGGCTTTATCAGGTGGCGGAAGGGAGGTGTTGGCGAAGAGGAGAACGGCGAGAAGGAAGAGAGCAGTGGAGAGGAAGAGTGGCCAGAAGTAAGCGAGAAGGGAGAGGAAACTTGGAGCAAGGAGGAAGAGGGAGAAGAGAGTTAG

Coding sequence (CDS)

ATGGATTTGATTGATTTAATCGGATTTGAGAGAGGAGGAGGAGTCGAGGTCGTGGTGGCCGGCGACATAGCTGAGGAGACCTTCGGCGGCTTTATCAGGTGGCGGAAGGGAGGTGTTGGCGAAGAGGAGAACGGCGAGAAGGAAGAGAGCAGTGGAGAGGAAGAGTGGCCAGAAGTAAGCGAGAAGGGAGAGGAAACTTGGAGCAAGGAGGAAGAGGGAGAAGAGAGTTAG

Protein sequence

MDLIDLIGFERGGGVEVVVAGDIAEETFGGFIRWRKGGVGEEENGEKEESSGEEEWPEVSEKGEETWSKEEEGEES

Homology

[Close]

BLAST of MELO3C014101 vs. NCBI nr
Match: XP_022154103.1 (uncharacterized protein LOC111021439 [Momordica charantia])

HSP 1 Score: 71.2 bits (173), Expect = 4.2e-09
Identity = 46/75 (61.33%), Postives = 56/75 (74.67%), Query Frame = 0


Query: 6   LIGFERGGGVEV-----VVAGDIAEETFGGFIRWRKGGVGEEENGEKEESSGEEEWPEVS 65
           LIG E  GGVEV     VVAGD+ EE   GF+  R+GGVGEEE+GE+EE  GEEE PE+ 
Sbjct: 667 LIGLE--GGVEVVVVVRVVAGDVVEEALAGFVGRREGGVGEEEDGEEEEGGGEEEGPEIG 726

Query: 66  EKGEETWSKEEEGEE 76
           E+GEE+ S+E+EGEE
Sbjct: 727 EEGEESRSEEDEGEE 739

[Close]

BLAST of MELO3C014101 vs. ExPASy TrEMBL
Match: A0A6J1DJC7 (Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111021439 PE=4 SV=1)

HSP 1 Score: 71.2 bits (173), Expect = 2.0e-09
Identity = 46/75 (61.33%), Postives = 56/75 (74.67%), Query Frame = 0


Query: 6   LIGFERGGGVEV-----VVAGDIAEETFGGFIRWRKGGVGEEENGEKEESSGEEEWPEVS 65
           LIG E  GGVEV     VVAGD+ EE   GF+  R+GGVGEEE+GE+EE  GEEE PE+ 
Sbjct: 667 LIGLE--GGVEVVVVVRVVAGDVVEEALAGFVGRREGGVGEEEDGEEEEGGGEEEGPEIG 726

Query: 66  EKGEETWSKEEEGEE 76
           E+GEE+ S+E+EGEE
Sbjct: 727 EEGEESRSEEDEGEE 739

The following BLAST results are available for this feature:

BLAST of MELO3C014101 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_022154103.1	4.2e-09	61.33	uncharacterized protein LOC111021439 [Momordica charantia]	[more]

BLAST of MELO3C014101 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C014101 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1DJC7	2.0e-09	61.33	Ribonuclease H OS=Momordica charantia OX=3673 GN=LOC111021439 PE=4 SV=1	[more]

BLAST of MELO3C014101 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 46..60
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 36..76

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C014101.1	MELO3C014101.1	mRNA