MELO3C013845 (gene) Melon (DHL92) v4

Overview


Name	MELO3C013845
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	glycine-rich cell wall structural protein 1.8-like
Location	chr06: 31666432 .. 31667223 (+)
RNA-Seq Expression	MELO3C013845
Synteny	MELO3C013845

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGCTATCTCTAAAACTTTATCTTTTGGTTTCCTTTTGCTGGTGAGTTTGGGCTTAGCTTCGGCGGCCCGATCTCTTCTTTATTACGATATGCCTCCTCATCGATCTGGATACGATAATAATTATGATAATCATCCTGTCGTTAACCCTAAAGTAGGATACGAACACGACCATCATGATGGATACTACCATGACCGTGACCATCATGATGCACCTTATGGTGGTGGTGCTGGTGGAGGATATGGAGCTGGAGGTGGAGCTGGCTCATCTCTTGGAGGTTCTGGATATGGAAGTGGAGGAGGTGGTGGTTCTGGATATGGAGGTGTAGGAAACCATGGGGTTGGTTATGGTAGTGGTGGAGGAGGTGGATATGGAGCTGGAGTTGGCTCTGACCTTGGTGGTAGCGGATACGGAAGCGGTGGTGGTGGAGGAAGTGGTGGAGGATATGGTGATTTAGGAGGACATGGAAAAGGGTACGGTAGCGGTGGCGGTGGAGGAAGTGGATATGGAGGTAGAGGAGACCATGGAGTTGGATATGGAAGTGGTGGAGGTGGAGGATATGGAAGTGGAGTTGGTGGTGCAGGAGTAGACCATGGTGTAGGTTATGGGAGTGGAGGAGGAGGTGGGGCTGGTGGTGGTTATGGTGGTTCCAAAGGATATGGAGCTGGAAGCGGCGGCGGTGGGGGAGCCGGTTATGGTGGTGGAGCACATGGAAGTGGATATGGAAGTGGTGGAGGAGCTGGAGCTGGAAGTGGTGAAGAAGGAGGATATGATGGTGGATATGCACCTTAA

mRNA sequence

ATGGCTATCTCTAAAACTTTATCTTTTGGTTTCCTTTTGCTGGTGAGTTTGGGCTTAGCTTCGGCGGCCCGATCTCTTCTTTATTACGATATGCCTCCTCATCGATCTGGATACGATAATAATTATGATAATCATCCTGTCGTTAACCCTAAAGTAGGATACGAACACGACCATCATGATGGATACTACCATGACCGTGACCATCATGATGCACCTTATGGTGGTGGTGCTGGTGGAGGATATGGAGCTGGAGGTGGAGCTGGCTCATCTCTTGGAGGTTCTGGATATGGAAGTGGAGGAGGTGGTGGTTCTGGATATGGAGGTTGGTGGAGGAGGTGGATATGGAGCTGGAGTTGGCTCTGACCTTGGTGGTAGCGGATACGGAAGCGGTGGTGGTGGAGGAAGTGGTGGAGGATATGGTGATTTAGGAGGACATGGAAAAGGGTACGGTAGCGGTGGCGGTGGAGGAAGTGGATATGGAGGTAGAGGAGACCATGGAGTTGGATATGGAAGTGGTGGAGGTGGAGGATATGGAAGTGGAGTTGGTGGTGCAGGAGTAGACCATGGTGTAGGTTATGGGAGTGGAGGAGGAGGTGGGGCTGGTGGTGGTTATGGTGGTTCCAAAGGATATGGAGCTGGAAGCGGCGGCGGTGGGGGAGCCGGTTATGGTGGTGGAGCACATGGAAGTGGATATGGAAGTGGTGGAGGAGCTGGAGCTGGAAGTGGTGAAGAAGGAGGATATGATGGTGGATATGCACCTTAA

Coding sequence (CDS)

ATGATGGATACTACCATGACCGTGACCATCATGATGCACCTTATGGTGGTGGTGCTGGTGGAGGATATGGAGCTGGAGGTGGAGCTGGCTCATCTCTTGGAGGTTCTGGATATGGAAGTGGAGGAGGTGGTGGTTCTGGATATGGAGGTTGGTGGAGGAGGTGGATATGGAGCTGGAGTTGGCTCTGACCTTGGTGGTAGCGGATACGGAAGCGGTGGTGGTGGAGGAAGTGGTGGAGGATATGGTGATTTAGGAGGACATGGAAAAGGGTACGGTAGCGGTGGCGGTGGAGGAAGTGGATATGGAGGTAGAGGAGACCATGGAGTTGGATATGGAAGTGGTGGAGGTGGAGGATATGGAAGTGGAGTTGGTGGTGCAGGAGTAGACCATGGTGTAGGTTATGGGAGTGGAGGAGGAGGTGGGGCTGGTGGTGGTTATGGTGGTTCCAAAGGATATGGAGCTGGAAGCGGCGGCGGTGGGGGAGCCGGTTATGGTGGTGGAGCACATGGAAGTGGATATGGAAGTGGTGGAGGAGCTGGAGCTGGAAGTGGTGAAGAAGGAGGATATGATGGTGGATATGCACCTTAA

Protein sequence

MMDTTMTVTIMMHLMVVVLVEDMELEVELAHLLEVLDMEVEEVVVLDMEVGGGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGGHGKGYGSGGGGGSGYGGRGDHGVGYGSGGGGGYGSGVGGAGVDHGVGYGSGGGGGAGGGYGGSKGYGAGSGGGGGAGYGGGAHGSGYGSGGGAGAGSGEEGGYDGGYAP

Homology

[Close]

BLAST of MELO3C013845 vs. NCBI nr
Match: XP_008448673.1 (PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis melo])

HSP 1 Score: 191.4 bits (485), Expect = 7.2e-45
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 51  GGGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGGHGKGYGSGGGGGSGYGGRGDHGVG 110
           GGGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGGHGKGYGSGGGGGSGYGGRGDHGVG
Sbjct: 119 GGGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGGHGKGYGSGGGGGSGYGGRGDHGVG 178

Query: 111 YGSGGGGGYGSGVGGAGVDHGVGYGSGGGGGAGGGYGGSKGYGAGSGGGGGAGYGGGAHG 170
           YGSGGGGGYGSGVGGAGVDHGVGYGSGGGGGAGGGYGGSKGYGAGSGGGGGAGYGGGAHG
Sbjct: 179 YGSGGGGGYGSGVGGAGVDHGVGYGSGGGGGAGGGYGGSKGYGAGSGGGGGAGYGGGAHG 238

Query: 171 SGYGSGGGAGAGSGEEGGYDGGYAP 196
           SGYGSGGGAGAGSGEEGGYDGGYAP
Sbjct: 239 SGYGSGGGAGAGSGEEGGYDGGYAP 263

[Close]

BLAST of MELO3C013845 vs. NCBI nr
Match: XP_011650342.1 (glycine-rich cell wall structural protein 2 [Cucumis sativus])

HSP 1 Score: 168.7 bits (426), Expect = 5.0e-38
Identity = 138/147 (93.88%), Postives = 138/147 (93.88%), Query Frame = 0


Query: 51  GGGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGGHGKGYGSGGGGGSGYGGRGDHGVG 110
           GGGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGG GKGYGSGGGGGSGYGGRGDHGVG
Sbjct: 117 GGGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGGRGKGYGSGGGGGSGYGGRGDHGVG 176

Query: 111 YGSGGGGGYGSGVGGAG--VDHGVGYGSGGGGGAGGGYGGSKGYGAGSGGGGGAGYGGGA 170
           YGSGGGGGYGSGVGG    VDHGVGYGSGGGGGAG GYGGSKGYG GSGGGGGAGYGGGA
Sbjct: 177 YGSGGGGGYGSGVGGGAGVVDHGVGYGSGGGGGAGSGYGGSKGYGGGSGGGGGAGYGGGA 236

Query: 171 HGSGYGSGGGAGAGSGEEGGYDGGYAP 196
           HGSGYGSGG  GAGSGEEGGYDGGYAP
Sbjct: 237 HGSGYGSGG--GAGSGEEGGYDGGYAP 261

[Close]

BLAST of MELO3C013845 vs. NCBI nr
Match: BAA34064.1 (glycine-rich protein-2, partial [Cucumis sativus])

HSP 1 Score: 167.5 bits (423), Expect = 1.1e-37
Identity = 137/147 (93.20%), Postives = 138/147 (93.88%), Query Frame = 0


Query: 51  GGGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGGHGKGYGSGGGGGSGYGGRGDHGVG 110
           GGGGGYGAGVGSDLGGSGYGSGGGGG+GGGYGDLGG GKGYGSGGGGGSGYGGRGDHGVG
Sbjct: 117 GGGGGYGAGVGSDLGGSGYGSGGGGGTGGGYGDLGGRGKGYGSGGGGGSGYGGRGDHGVG 176

Query: 111 YGSGGGGGYGSGVGGAG--VDHGVGYGSGGGGGAGGGYGGSKGYGAGSGGGGGAGYGGGA 170
           YGSGGGGGYGSGVGG    VDHGVGYGSGGGGGAG GYGGSKGYG GSGGGGGAGYGGGA
Sbjct: 177 YGSGGGGGYGSGVGGGAGVVDHGVGYGSGGGGGAGSGYGGSKGYGGGSGGGGGAGYGGGA 236

Query: 171 HGSGYGSGGGAGAGSGEEGGYDGGYAP 196
           HGSGYGSGG  GAGSGEEGGYDGGYAP
Sbjct: 237 HGSGYGSGG--GAGSGEEGGYDGGYAP 261

[Close]

BLAST of MELO3C013845 vs. NCBI nr
Match: XP_038903617.1 (glycine-rich cell wall structural protein 1.8-like [Benincasa hispida])

HSP 1 Score: 162.9 bits (411), Expect = 2.7e-36
Identity = 136/151 (90.07%), Postives = 139/151 (92.05%), Query Frame = 0


Query: 51  GGGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGGHGKGYGSGGGGGSGYGGRGDHGVG 110
           GGGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGGHGKGYGSGGGGGSGY GRGDHGVG
Sbjct: 105 GGGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGGHGKGYGSGGGGGSGYEGRGDHGVG 164

Query: 111 YGSGGGGGYGSGVG---GAGVDHGVGYGSGGGGGAGGGYGGSKGYGAGSGGGGGAGYGGG 170
           YGSGGGGGYGSG G   G GV HG+GYGSGGGGG+GGGYGGSKGY  GSGGGGGAGYGGG
Sbjct: 165 YGSGGGGGYGSGGGVEHGPGVGHGIGYGSGGGGGSGGGYGGSKGYEGGSGGGGGAGYGGG 224

Query: 171 AHGSGYGSGGGAGA---GSGEEGGYDGGYAP 196
           AHGSGYGSGGGAG+   GSGEEGGYDGGYAP
Sbjct: 225 AHGSGYGSGGGAGSGYGGSGEEGGYDGGYAP 255

[Close]

BLAST of MELO3C013845 vs. NCBI nr
Match: XP_038905926.1 (glycine-rich cell wall structural protein 1.8-like [Benincasa hispida])

HSP 1 Score: 159.5 bits (402), Expect = 3.0e-35
Identity = 134/148 (90.54%), Postives = 137/148 (92.57%), Query Frame = 0


Query: 51  GGGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGGHGKGYGSGGGGGSGYGGRGDHGVG 110
           GGGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGGHGKGYGSGGGGGSGYGGRGDHGVG
Sbjct: 113 GGGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGGHGKGYGSGGGGGSGYGGRGDHGVG 172

Query: 111 YGSGGGGGYGSGVG---GAGVDHGVGYGSGGGGGAGGGYGGSKGYGAGSGGGGGAGYGGG 170
           YGSGGGGGYGSG G   G GV+HGVGYGSGGGGG+G GYGGSKGYG GSGGGGGAGYGGG
Sbjct: 173 YGSGGGGGYGSGGGAGYGPGVEHGVGYGSGGGGGSGSGYGGSKGYGGGSGGGGGAGYGGG 232

Query: 171 AHGSGYGSGGGAGAGSGEEGGYDGGYAP 196
           AHGSG G+G G G GSGEEGGYDGGYAP
Sbjct: 233 AHGSGGGAGSGYG-GSGEEGGYDGGYAP 259

[Close]

BLAST of MELO3C013845 vs. ExPASy TrEMBL
Match: A0A1S3BJM7 (glycine-rich cell wall structural protein 2-like OS=Cucumis melo OX=3656 GN=LOC103490774 PE=4 SV=1)

HSP 1 Score: 191.4 bits (485), Expect = 3.5e-45
Identity = 145/145 (100.00%), Postives = 145/145 (100.00%), Query Frame = 0


Query: 51  GGGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGGHGKGYGSGGGGGSGYGGRGDHGVG 110
           GGGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGGHGKGYGSGGGGGSGYGGRGDHGVG
Sbjct: 119 GGGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGGHGKGYGSGGGGGSGYGGRGDHGVG 178

Query: 111 YGSGGGGGYGSGVGGAGVDHGVGYGSGGGGGAGGGYGGSKGYGAGSGGGGGAGYGGGAHG 170
           YGSGGGGGYGSGVGGAGVDHGVGYGSGGGGGAGGGYGGSKGYGAGSGGGGGAGYGGGAHG
Sbjct: 179 YGSGGGGGYGSGVGGAGVDHGVGYGSGGGGGAGGGYGGSKGYGAGSGGGGGAGYGGGAHG 238

Query: 171 SGYGSGGGAGAGSGEEGGYDGGYAP 196
           SGYGSGGGAGAGSGEEGGYDGGYAP
Sbjct: 239 SGYGSGGGAGAGSGEEGGYDGGYAP 263

[Close]

BLAST of MELO3C013845 vs. ExPASy TrEMBL
Match: A0A0A0L1U7 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G009540 PE=4 SV=1)

HSP 1 Score: 168.7 bits (426), Expect = 2.4e-38
Identity = 138/147 (93.88%), Postives = 138/147 (93.88%), Query Frame = 0


Query: 51  GGGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGGHGKGYGSGGGGGSGYGGRGDHGVG 110
           GGGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGG GKGYGSGGGGGSGYGGRGDHGVG
Sbjct: 117 GGGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGGRGKGYGSGGGGGSGYGGRGDHGVG 176

Query: 111 YGSGGGGGYGSGVGGAG--VDHGVGYGSGGGGGAGGGYGGSKGYGAGSGGGGGAGYGGGA 170
           YGSGGGGGYGSGVGG    VDHGVGYGSGGGGGAG GYGGSKGYG GSGGGGGAGYGGGA
Sbjct: 177 YGSGGGGGYGSGVGGGAGVVDHGVGYGSGGGGGAGSGYGGSKGYGGGSGGGGGAGYGGGA 236

Query: 171 HGSGYGSGGGAGAGSGEEGGYDGGYAP 196
           HGSGYGSGG  GAGSGEEGGYDGGYAP
Sbjct: 237 HGSGYGSGG--GAGSGEEGGYDGGYAP 261

[Close]

BLAST of MELO3C013845 vs. ExPASy TrEMBL
Match: Q9ZWM2 (Glycine-rich protein-2 (Fragment) OS=Cucumis sativus OX=3659 PE=2 SV=1)

HSP 1 Score: 167.5 bits (423), Expect = 5.4e-38
Identity = 137/147 (93.20%), Postives = 138/147 (93.88%), Query Frame = 0


Query: 51  GGGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGGHGKGYGSGGGGGSGYGGRGDHGVG 110
           GGGGGYGAGVGSDLGGSGYGSGGGGG+GGGYGDLGG GKGYGSGGGGGSGYGGRGDHGVG
Sbjct: 117 GGGGGYGAGVGSDLGGSGYGSGGGGGTGGGYGDLGGRGKGYGSGGGGGSGYGGRGDHGVG 176

Query: 111 YGSGGGGGYGSGVGGAG--VDHGVGYGSGGGGGAGGGYGGSKGYGAGSGGGGGAGYGGGA 170
           YGSGGGGGYGSGVGG    VDHGVGYGSGGGGGAG GYGGSKGYG GSGGGGGAGYGGGA
Sbjct: 177 YGSGGGGGYGSGVGGGAGVVDHGVGYGSGGGGGAGSGYGGSKGYGGGSGGGGGAGYGGGA 236

Query: 171 HGSGYGSGGGAGAGSGEEGGYDGGYAP 196
           HGSGYGSGG  GAGSGEEGGYDGGYAP
Sbjct: 237 HGSGYGSGG--GAGSGEEGGYDGGYAP 261

[Close]

BLAST of MELO3C013845 vs. ExPASy TrEMBL
Match: A0A6J1CWP3 (glycine-rich cell wall structural protein 1.8-like isoform X1 OS=Momordica charantia OX=3673 GN=LOC111014911 PE=4 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 1.8e-25
Identity = 125/154 (81.17%), Postives = 130/154 (84.42%), Query Frame = 0


Query: 51  GGGGGYGAGVGSDLGGSGYGSGGGGGSGGGYGDLGGHGKGYGSGGGGGSGYGGRGDHGVG 110
           GGGGGYG G+GS LGG+GYGSGGGGGSGGGYGD GG GKGYGSGGGGGSGYGG GDHG G
Sbjct: 98  GGGGGYGGGMGSGLGGAGYGSGGGGGSGGGYGDAGGRGKGYGSGGGGGSGYGGGGDHGAG 157

Query: 111 YGSGGGGGYGS-GVGGAGV---DHGVGYGSGGGGGAGGGYGGSK-GYGAGSGG--GGGAG 170
           YGSGGGGGYGS G GGAG    +HGVGYGSGGGGG+GGGYGGSK GYG GSGG  GGG G
Sbjct: 158 YGSGGGGGYGSGGGGGAGYGPGEHGVGYGSGGGGGSGGGYGGSKGGYGGGSGGGKGGGGG 217

Query: 171 YG-GGAHGSGYGSGGGAGAG---SGEEGGYDGGY 194
           YG GGAHG GYG GGG+G G   SGEEGGYDGGY
Sbjct: 218 YGAGGAHGGGYGGGGGSGGGYGSSGEEGGYDGGY 251

[Close]

BLAST of MELO3C013845 vs. ExPASy TrEMBL
Match: A0A6J1KTC0 (glycine-rich cell wall structural protein 1.8-like OS=Cucurbita maxima OX=3661 GN=LOC111498476 PE=4 SV=1)

HSP 1 Score: 108.6 bits (270), Expect = 3.0e-20
Identity = 118/153 (77.12%), Postives = 121/153 (79.08%), Query Frame = 0


Query: 51  GGGGGYGAGVGSDLG--GSGYGSGGGGGSGGGYGDLGGHGKGYGSGGGGGSGYGGRGDHG 110
           GGGGG G G G DLG  G GYGSGGGGGSG GYGDL GHGKGYGSGGGGGSGYGG  DHG
Sbjct: 110 GGGGGSGVGYG-DLGGHGKGYGSGGGGGSGVGYGDLSGHGKGYGSGGGGGSGYGGGADHG 169

Query: 111 VGYGSGGGGGYGSGVG---GAGVDHGVGYGSGGGGGAGGGYGG-SKGYGAGSGGGGGAGY 170
           VGYGSGGGGGYG+G G   G G DHGVGYGSGGGGG+GGGYGG  KGY     GGG  GY
Sbjct: 170 VGYGSGGGGGYGAGGGAGYGPGGDHGVGYGSGGGGGSGGGYGGRDKGY-----GGGPKGY 229

Query: 171 GGGAHGSGYGSGGGAGAG----SGEEGGYDGGY 194
           GGGA GSGYGSGGGAG+G     GEEGGYDGGY
Sbjct: 230 GGGAKGSGYGSGGGAGSGYGGVGGEEGGYDGGY 256

The following BLAST results are available for this feature:

BLAST of MELO3C013845 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008448673.1	7.2e-45	100.00	PREDICTED: glycine-rich cell wall structural protein 2-like [Cucumis melo]	[more]
XP_011650342.1	5.0e-38	93.88	glycine-rich cell wall structural protein 2 [Cucumis sativus]	[more]
BAA34064.1	1.1e-37	93.20	glycine-rich protein-2, partial [Cucumis sativus]	[more]
XP_038903617.1	2.7e-36	90.07	glycine-rich cell wall structural protein 1.8-like [Benincasa hispida]	[more]
XP_038905926.1	3.0e-35	90.54	glycine-rich cell wall structural protein 1.8-like [Benincasa hispida]	[more]

BLAST of MELO3C013845 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C013845 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BJM7	3.5e-45	100.00	glycine-rich cell wall structural protein 2-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A0A0L1U7	2.4e-38	93.88	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_3G009540 PE=4 SV=1	[more]
Q9ZWM2	5.4e-38	93.20	Glycine-rich protein-2 (Fragment) OS=Cucumis sativus OX=3659 PE=2 SV=1	[more]
A0A6J1CWP3	1.8e-25	81.17	glycine-rich cell wall structural protein 1.8-like isoform X1 OS=Momordica chara...	[more]
A0A6J1KTC0	3.0e-20	77.12	glycine-rich cell wall structural protein 1.8-like OS=Cucurbita maxima OX=3661 G...	[more]

BLAST of MELO3C013845 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06

Position :

Zoom :

x 1


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PRINTS	PR01228	EGGSHELL	coord: 52..63 score: 39.58 coord: 141..151 score: 43.18 coord: 180..195 score: 42.76 coord: 114..129 score: 51.56
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 175..195

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C013845.1	MELO3C013845.1	mRNA