MELO3C013741 (gene) Melon (DHL92) v4

Overview


Name	MELO3C013741
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	DNA-directed RNA polymerase subunit
Location	chr06: 30860046 .. 30869524 (-)
RNA-Seq Expression	MELO3C013741
Synteny	MELO3C013741

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTATTCGTCTATAAATACCCCTCTAGGGCTATGTTTCTCGGTTCATTTGGAGCTCTCTTCAAAGAGGGTTTCTACGATTGAGGGGGGAGAGACTGCTGTTGATCTCTCTGACTCTGATTAGTAGCAAAGAGGAAAAAACCGCAAAAACAAACTGAAAATTTCTGAAATTCGAAGTTGGAATCCAATTTTTTCCCGTCTGAACAACCCCAAAACTTCGCTTTCAATCTCTTCAGCTTGCTTTAGGGCTTTCTTTCTGAACTTCGATCACCATGGATTTGCGATTTCCTTACTCTCCGGCAGAGGTTGCCAAAGTCCGAATGGTTCAGTTTGGCATTCTTAGCCCCGACGAGATTGTAATTCTCTTACCCACACCGCCTCAATTTTCTTTCATTTTGTCTGATTCTGTTTTAATCTTGAGGGGTTGTTCGTGGGTCAAGAATGCTTTACATTTGTATGAAGTGAGTTTACTTTAGGAAGTGGGTTCAACTTGGTATCTGCAGTTGGCTCTGCTTGTTTTTTTTTATTACTTGGATATAGAGATGAGGGCCTTGACAATGTTCTTTTCTTTTTCTGTTCTTTAGTTCTTGTTTCATTTACATTGGAAGGCATTGGTTTTAGTGGTCGTTTTTGGTTTTGTCTCTCAAATTACAAATTTGAAAACTTGTAATTTTAAATGAAGTAAATGTATATTCTTTTTTGAAGTAAAAAGCTCGAAATTATTATGTCATATTCAAAAGGCTGTACTTCTTTTTGTTTTCAATTAATTGGAAATAGGAAATAAGAAATTAGATTCTTTTTGTATGCCAATGATTCATGAGAAATAGAGAATAAAATCTGTTCCAAAATGTAGACGTTTCTAAAGATCGGAAACTGGACATGAAAATGAGAAATGAAATATTTTTCCAACTACTTCCTGGTGTATAAAATCGTACATTCTTTGGATTGCAGAGGCAAATGTCCGTGGTACAGATTGAGCACGGTGAAACCACAGAGAGGGGTAAGCCAAAAGTAGCTGGTTTGAGTGACCCGCGACTTGGTACAATCGACAGAAAAATGAAGTGTGAAACTTGCACTGCAAATATGGCTGAGTGTCCTGGGCACTTTGGGCACCTTGAGCTTGCCAAACCAATGTTCCATATTGGGTTTATGAAGACCGTACTCACTATTATGCGTTCTGTGTGCTTCAATTGCTCAAAGATTCTAGTTGACGAGGTTCTTTCTTAATATTATATTTGATTGTTTCGGGATATATTAGAAATTCACGCTGCACACATGTGTTTTTTTTTTCTTTTGCTGCTTGCTAGTTGCTATGATTCATTATGAAGGATTCTAGAAGACTGCGTAGGATTACATGGGAAGGAACATATATGGTGCCATGTAATAAGTAGTTTGTTATGACTTTCAAGAGTTCAGTTGAAAATATAATTGGGATATTCTTTTAAGATGTTGAGATAATGGGAATACGGGTATAAGTGATCCTTGTCTCATTGAGGAGTTATTCTAGATTTCGTATGGAAATAGTCAATTTCCCTGAGCATATCTGTTTAACTCATTCAGGAAGATCCCAAGTTTAAACAAGCATTGCGGATAAAGAATCCTAAGAATAGACTTAGAAAGATTTTGGATGCCTGCAAGAACAAAACCAAGTGTGAGGGTGGCGATGAAATCGATGTTCAAGGTCAAGATTCCGATCAACCAGTAAAAAAAAGTCGGGGTGGCTGTGGTGCTCAGCAACCTAAGATCACAATTGAGGGTATGAAGATGACTGCAGAGTACAAGGCCCAAAGGAAAAAAAATGATGATCAGGAGCAGCTGCCTGAGCCTGTGGAAAGAAAACAAACACTTACTGCTGAAAGGGTGAACATTCAATCCTGATCAACATTATCTTTTGTATTTGGATGTATGTCTTCAAAGTTTGATGGATTTTTGTAGGTTCTTGGCATCCTGAAAAGAATAACTGATGATGATTGCAAACTCTTGGGCCTCAATCCAAAGTATGCACGGCCTGACTGGATGATTCTGCAAGTCCTTCCAATTCCGCCTCCTCCTGTGAGACCATCAGTTATGATGGACACCTCATCTAGAAGTGAGGTATGCTCATTCTGAGTTTGTTTTCTGATGTCTAATTGTTTCTTGTTTAGTTTACTGCTTCCCAATATATTTCATTTTGTTTTTCTAGTTAGTTTCTGAGGTAGTGTTATATGATGCATTATCAGATCAATTTTAACACAACGTTTCTTAATGCAGGACGATCTAACTCATCAGTTGGCAATGATTATAAGGCACAATGAAAACCTCAGGAGACAAGAGAGAAATGGTTCTCCAGCACATATCATTTCAGAGTTTGCGCAACTACTGCAGTTTCATATAGCCACATATTTTGATAATGAATTACCTGGACTACCCAGGGTATTAAGTCTCTATTGAAGCTATATTATGTTTTTTTTCCCAACTATTTTTTTTTCTTACGTTAGTATGCTGTTATAATATAGGCCACACAGAGATCTGGGAGGCCCATTAAATCTATTTGTAGCAGGCTCAAGGCAAAGGAAGGCCGGATAAGAGGAAATTTGATGGGAAAACGTGTAGATTTTTCAGCACGAACTGTTATAACACCTGATCCAACCATTAATATTGATGAACTGGGGGTACCTTGGAGTATTGCTTTGAACCTTACATATCCAGAGACTGTGACACCTTATAATATTGAAAGGTCCATATTTTAAAACCATTGCTTGCTTCTTGGTTATTTTCCCTTTCACAAAATTTATTGTTCAAGATTGGTGTTTTCTTTTGAAAATCAGGTTAAAGGAACTTGTTGAATATGGTCCCCATCCTCCACCTGGTAAAACTGGTGCCAAGTACATCATACGAGATGATGGGCAGAGGCTTGATCTTCGTTATCTTAAAAAAAGTAGTGATCATCATTTGGAGCTTGGGTACAAGGCAAGATTTTCTGTTCATACATGCAATCTAATATTTTTATGCGTTCTATAATTCCATCCTAATTCTTTTGCTGCTGTGATAATAGGTGGAGCGCCATTTAAATGATGGTGATTTTGTACTTTTTAATCGTCAGCCTAGTCTCCATAAAATGTCTATTATGGGACACAGAATCAAGATCATGCCCTACTCAACTTTCCGTCTAAATTTATCTGTCACATCACCTTACAATGCTGATTTTGATGGTGATGAAATGAATATGCATGTTCCTCAGTCATTTGAGACAAGGGCAGAAGTGTTGGAACTCATGATGGTTCCCAAATGCATTGTGTCACCTCAGTCAAACCGTCCAGTAATGGGTATAGTGCAGGATACTCTCCTAGGATGCCGTAAAATTACAAAAAGGGACACCTTTATAACGAAGGTGAGAGCAATATGATTGTTATTTCTTGCCCTTTGTCTTCAAAACATTTTTGTTTGTTGTATATAACTTGTAAGATGGGATAATGAAACTGCATTGGTAAATTTGCAGGATGTTTTCATGAATATTTTGATGTGGTGGGAAGACTTTGACGGGAAAATTCCTGCCCCTGCAATTTTAAAGCCACAACCTCTTTGGACGGGAAAGCAAGTTTTTAATCTTATTATACCAAAGCAGATCAATCTCACGAGAACTTCTGCCTGGCATTCTGAATCCGAAACTGGACACGTAACTCCTGGAGATACTTTTGTTAGGATTGAGAAGGGGGAGCTACTTTCTGGAACCCTTTGCAAGAAGGCTCTTGGAACATCAACTGGAAGTCTTATACATGTTATTTGGTATGCATTAGCAATAGTGCTATGCACTGCTTTTCAACCGGACGTGGTCTGTAATCATCATCATTATCATCTCTTAAAAAAGTTTTCGCAATTTTTTTTTGAACTCATATTACATTTTTTAAAAAGAACTGTTCGGACTCTTGCTTGACTAATTGGATACGTCTTTATTACACTAAAATTTTAAAAAAAGAAATAATCTGCTGTTGGGATGCAGCCTTGAGGAGGTATGCCACTTGGAGATGAAGGTTAGTGTTTCGAATGTGATGTTCTTCTGTTTGAGTTGTCAAAATGACGGAACTCAACAGTCTTGTAAAAATGACAGAATTGCCTTTTATGATCATTTTTATAAAACTGGAACTCAAATTGTAATTTCACATGGTTTTTCTTTTAAAATTTATTAAGTCTAAATGACATGGTCTATTTTTTTTTTACATTCAACTATTTAGGAACTGCTTTTCCAACACTTTCCAGGCTGGCTTTTATTAGTCCTCCCATTCCCCTTTCTTCTTTGTGGTTTGTATCATAATACTTTCTCGTTAGACTCTTATTTTGTTTAACTGAGGTGTTTAATGTAGTTTTTATGTTGCCTTTTGTGTTTTGTAATATTCTTTTTTTCTGTCCCGTTTCTAATCATGTAAATGTTTCCAGGGAGGAGGTTGGTCCGGATGCAGCCCGAAAATTTCTGGGTCATACTCAGTGGCTTGTCAATTACTGGCTTTTGCAGAATGCTTTTAGCATTGGGATTGGGGATACAATTGCTGATGCAGCAACCATGGAGAAAATTAATGAAACTATCTCTGCTGCTAAAAATGAAGTGAAAAACCTCATAAAGAAAGCCCAAGAACGGAGTTTAGAGCCTGAACCTGGACGAACAATGATGGATTCATTTGAAAACAAAGTGAATCAAGTCCTGAATAAGGCTCGTGATGATGCTGGTAGTAGTGCACAAAAAAGTTTGTCAGAGAGTAACAATTTGAAAGCTATGGTCACTGCAGGATCCAAGGGCAGTTTTATCAACATCTCCCAGATGACTGCTTGTGTGGGGCAGCAGAATGTTGAAGGGAAGCGAATACCATTTGGTTTCATTGATCGAACATTGCCCCATTTCACTAAAGATGATTATGGGCCTGAAAGTCGTGGCTTTGTTGAGAACTCGTATCTTCGAGGTTTGACTCCACAGGAGTTCTTTTTTCATGCTATGGGTGGTAGGGAAGGTCTTATTGATACTGCAGTCAAGACATCTGAAACAGGGTACATCCAGAGGAGGCTGGTGAAGGCCATGGAGGATATCATGGTTAAATATGATGGGACTGTTAGAAACTCATTGGGTGATGTTATTCAGTTCCTGTATGGTGAAGATGGTATGGACGCTGTTTGGATAGAATCTCAGAAACTTGATTCTTTGAAAATGAAGAAAAAGGAATTTGAGAGGATCTTCAGGTACGAGTTTGAAGATGAAAACTGGAAGCCAAATTACATGTTGCCAGAGCATGTAGAAGATTTGAAAACCATCCGAGAATTCCGGAATGTGTTCGAGGCTGAAGTTCAAAAGCTTGAAGCAGACAGGTATCAATTAGGAACAGAAATTGCAACTACAGGTGAAAACTCTTGGCCAATGCCAGTTAACCTGAAAAGGCTAATTCAGAATGCACAGAAAACTTTCAAGATTGACTTTCGAAGGGCTTCTGACATGCATCCTATGGAAATTGTTGAAGCTATTGATAAACTTCAAGAGAGGCTGAAGGTTGTTCCTGGTGAAGATCCTCTAAGTGTGGAGGCTCAAAAGAATGCCACCCTTTTCTTCAATATATTACTCCGAAGCACTTTTGCTAGCAAAAGGGTTTTGGATGAATACAGGCTTACTCGTGAAGCATTCGAGTGGGTTATTGGAGAAATAGAATCACGCTTCCTTCAGTCACTAGTAGCACCTGGTGAAATGATTGGCTGTGTTGCTGCACAGTCCATTGGAGAGCCGGCAACTCAGATGACTCTTAATACCTTCCATTATGCTGGTGTTAGTGCCAAGAATGTCACTCTTGGTGTTCCCAGATTGAGGGAAATCATTAATGTAGCCAAGAGAATCAAAACACCTTCTCTTTCTGTCTATCTAAAACCCGAAGCTAATAAAACCAAGGAGAGAGCGAAGACTGTTCAATGTGCTCTGGAATATACTACTCTTAGAAGTGTTACACAAGCGACGGAAGTATGGTATGATCCTGACCCCATGAGCACGATTATTGAAGAGGATATTGATTTTGTAAAATCCTATTATGAGATGCCAGATGAGGAAATTGCTCCTGAGAAAATCTCCCCATGGTTGCTTCGTATAGAGTTGAATCGTGAAATGATGGTGGATAAGAAACTAAGCATGGCCAATATTGCTGAGAAGATCAACCTTGAATTTGATGATGATTTGACTTGCATATTTAATGATGATAATGCTGAGAAGCTGATACTTCGTATACGTATCATGAATGATGAAGCTCCAAAGGGGGAGTTGACTGATGAATCAGCTGAAGACGACGTGTTCTTGAAGAAAATTGAGAGTAATATGCTAACTGAAATGGCTCTTCGAGGAATACCAGACATCAACAAGGTTTTCATTAAATGTGGTAAAGTGAACAAGTTCGATGAGAATGAGGGTTTTAAACCAGAGATGGAGTGGATGTTGGATACAGAAGGTGTCAATCTTTTAGCCGTCATGTGTCATGAAGATGTTGATGCGAGGAGGACCACAAGCAACCATTTGATTGAAGTTATTGAAGTTCTTGGAATTGAAGCAGTTCGGCGTTCTCTTCTGGATGAATTGCGTGTTGTTATATCCTTTGATGGTTCTTATGTTAATTACAGACATCTTGCCATCCTTTGTGACACAATGACTTATCGTGGCCACTTGATGGCTATTACTCGTCATGGTATTAATAGAAATGATACTGGACCAATGATGAGATGCTCATTTGAAGAAACTGTGGATATCTTACTTGATGCTGCAGTATATGCTGAAACTGACCACTTAAGGGGTGTAACTGAAAATATAATGTTGGGTCAGCTGGCCCCCATAGGAACTGGAGGCTGTGCTCTGTATCTCAATGATGAGATGTTGAAGAATGCTATTGAGCTCCAGCTGCCTAGTTACATTGACGGTCTGGATTTTGGCATGACACCTTCCCGTTCCCCAATCTCAGGAACTCCTTATCATGAAGGGATGATGTCTCCTAATTATTTGTTGAGCCCAAATCTCCGCCTATCACCTATCAGCGATGCTCAATTTTCACCCTATGTAGGAGGAATGGCATTCTCTCCTACGTCATCTCCAGGCTATAGCCCATCGTCTCCGGGCTACAGTCCATCATCCCCTGGCTATAGTCCCACATCTCCTGGTTATAGTCCTACTTCTCCGGGATACAGCCCTACCTCTCCGGGATACAGTCCAACATCTCCAACATACAGTCCTAGTTCGCCGGGCTATAGCCCAACTAGTCCTGCATATTCTCCTACAAGTCCATCTTATTCACCCACCTCTCCCAGTTACAGCCCAACCTCTCCAAGTTACAGCCCCACCTCTCCTAGTTACAGCCCCACATCACCTAGTTACAGCCCCACTTCCCCAAGCTACAGCCCCACTTCTCCTGCTTACAGTCCAACTTCACCTGCTTACAGTCCCACTTCCCCTGCATATAGCCCAACTTCACCCTCCTACAGCCCAACTTCCCCCTCCTACAGCCCAACTTCACCCTCCTACAGCCCAACATCTCCCTCCTACAGCCCAACATCTCCGTCTTACAGTCCCACATCACCTTCGTACAGCCCCACCTCTCCAGCATATAGCCCCACCTCCCCTGGCTATAGTCCCACGTCTCCAAGCTATAGCCCCACTTCTCCTAGCTATAGTCCAACCTCACCTAGTTATAATCCTCAATCAGCTAAATACAGCCCATCGCAGGCATACTCACCCAGTAGTCCACGGTTGTCTCCTTCAAGTCCATATAGCCCAACCTCGCCCAATTACAGGTAGTGTGAAGTATTTTTTGGATAGAATATCTTGGGCACCGTGCAAGAGTCTGAATGGGAAACTCCCTTGCAATCATGCTTGTTTTTCTGGTTTGTTTCTGATTGTTTTGAATCTAACAAGTTTAAACATCTTGTCTTACCTTGCAGCCCAACGTCGCCATCATATTCTCCTACTTCTCCAGCATATTCTCCATCCAGCCCGACCTACAGTCCTAGCAGGTAAAATTCTACTTCCCTTTTCTGTAGATCTCTCTGTAACTAACATCTACTCTTTCAAACTAAAGCTATGGATTATGATACACGTTTTTGTCCTTGCATTTCTTAACCCACTATTTTGCCTTTCTTTTCCTCAGTCCATATAATACAGGACCCAGCCCAGACTACAGCCCTAGTTCTCCACAGTACAGGTTAGCTGATATTAACTTATTGGTCAAACCATTTACATGTTCTTTCCTAGTGAAATCTGATTGTTTGTCCTCTTTCTAGTCCAAGTGCAGGGTACTCACCTACTGCTCCTGGGTATTCTCCATCATCTACTAGTCAGTACACTCCACAAACAAGTGACAAGGATGATAGGAGTAGAAAGGATGATAGGAACAATCGATGATGAGAGTTCCAAAGCAAATATCCTTGAAGGAAGAGGGTAAAGTTCTTGAAGCCCTGATTTGACTGATGATGAAAAAAGGAGGCTAACTGGTTCGTTTAGTTTTCCTGAATAATTGATCTTCAGGATGTTTGTGGGTTTCTCATCTTGATGCCTGCCGTCATTTCTGGATATGGACTTGGAAAGGGCGTTGTTTCTTAGTTAGCTATTTTCGAAAAAATTGGCTGGGTAGATATTATTTAGTAAGGTTGAATTATCCTCTAGGAAGACTCCTTTTGAGTGTACTAGAGTGTATACATGAAGTATCTTTATATAGTCAGAAAGAAATATAATGAAGAATACTAAAGTCGACAAAATCAGAGATTTTGGTTATCATACGAGTAGCTGACGTTTTATATGGATATTGTGATTCGTGTCTCCCCACCCCACCCCCAAAGGGGGAAAAAGAAGTTTCAAAGCATATCCAACATTTATAAGGTAATTACATGGAGTTTTTTGTGTAATATTTGACATGGAAATTAGCATAGGAACTATATAGGATTTAAGTGAAGTAGCTACCCTTTTGTTCGGGTTGGTGTTGGTGTTTTTGTATATTCTTTCATTTGTCTTAATTGAAACGTGGTTTCTTATCTTGAGATTCGAATGATTTTGCACTTTGCTTCATTGTAAAAGTGAACTGATTGTGCAGGTAATTTGTAAATGTCAGGCCCTCGAATTTCAAACGAGAAGAGGCAAATAAACAACCAGATACACCAAGGCAGCATGTTGCTCGGATTGGACACACTATTACATCACTTAGGCTTTCACAAGCTTGTTCATTTCTGCTTTGAAGGATCTGTCAAACATATTACAAGCAAAAACTTATTCCCTCACAATTTTAGCCATACGTTCCATGTAATTTTGTACCCATGCCAAATAGTAGATCATTATTTGAATTAACCTGTATTTTGTGTGTTGATGTCGGAACTCTTTTAAAATGTTGTTCCCTTCTCAGATTAAATGATAATGTTTCTCAACCATAAACTATAAAGTCATATACTATTTTAGTCTTTTATTAAAACGTTTTGATCCCTCTACTTGAAGAATGTTCATTTATTTCTA

mRNA sequence

GGTATTCGTCTATAAATACCCCTCTAGGGCTATGTTTCTCGGTTCATTTGGAGCTCTCTTCAAAGAGGGTTTCTACGATTGAGGGGGGAGAGACTGCTGTTGATCTCTCTGACTCTGATTAGTAGCAAAGAGGAAAAAACCGCAAAAACAAACTGAAAATTTCTGAAATTCGAAGTTGGAATCCAATTTTTTCCCGTCTGAACAACCCCAAAACTTCGCTTTCAATCTCTTCAGCTTGCTTTAGGGCTTTCTTTCTGAACTTCGATCACCATGGATTTGCGATTTCCTTACTCTCCGGCAGAGGTTGCCAAAGTCCGAATGGTTCAGTTTGGCATTCTTAGCCCCGACGAGATTAGGCAAATGTCCGTGGTACAGATTGAGCACGGTGAAACCACAGAGAGGGGTAAGCCAAAAGTAGCTGGTTTGAGTGACCCGCGACTTGGTACAATCGACAGAAAAATGAAGTGTGAAACTTGCACTGCAAATATGGCTGAGTGTCCTGGGCACTTTGGGCACCTTGAGCTTGCCAAACCAATGTTCCATATTGGGTTTATGAAGACCGTACTCACTATTATGCGTTCTGTGTGCTTCAATTGCTCAAAGATTCTAGTTGACGAGGAAGATCCCAAGTTTAAACAAGCATTGCGGATAAAGAATCCTAAGAATAGACTTAGAAAGATTTTGGATGCCTGCAAGAACAAAACCAAGTGTGAGGGTGGCGATGAAATCGATGTTCAAGGTCAAGATTCCGATCAACCAGTAAAAAAAAGTCGGGGTGGCTGTGGTGCTCAGCAACCTAAGATCACAATTGAGGGTATGAAGATGACTGCAGAGTACAAGGCCCAAAGGAAAAAAAATGATGATCAGGAGCAGCTGCCTGAGCCTGTGGAAAGAAAACAAACACTTACTGCTGAAAGGGTTCTTGGCATCCTGAAAAGAATAACTGATGATGATTGCAAACTCTTGGGCCTCAATCCAAAGTATGCACGGCCTGACTGGATGATTCTGCAAGTCCTTCCAATTCCGCCTCCTCCTGTGAGACCATCAGTTATGATGGACACCTCATCTAGAAGTGAGGACGATCTAACTCATCAGTTGGCAATGATTATAAGGCACAATGAAAACCTCAGGAGACAAGAGAGAAATGGTTCTCCAGCACATATCATTTCAGAGTTTGCGCAACTACTGCAGTTTCATATAGCCACATATTTTGATAATGAATTACCTGGACTACCCAGGGCCACACAGAGATCTGGGAGGCCCATTAAATCTATTTGTAGCAGGCTCAAGGCAAAGGAAGGCCGGATAAGAGGAAATTTGATGGGAAAACGTGTAGATTTTTCAGCACGAACTGTTATAACACCTGATCCAACCATTAATATTGATGAACTGGGGGTACCTTGGAGTATTGCTTTGAACCTTACATATCCAGAGACTGTGACACCTTATAATATTGAAAGGTTAAAGGAACTTGTTGAATATGGTCCCCATCCTCCACCTGGTAAAACTGGTGCCAAGTACATCATACGAGATGATGGGCAGAGGCTTGATCTTCGTTATCTTAAAAAAAGTAGTGATCATCATTTGGAGCTTGGATGGGATAATGAAACTGCATTGGTAAATTTGCAGGATGTTTTCATGAATATTTTGATGTGGTGGGAAGACTTTGACGGGAAAATTCCTGCCCCTGCAATTTTAAAGCCACAACCTCTTTGGACGGGAAAGCAAATCAATCTCACGAGAACTTCTGCCTGGCATTCTGAATCCGAAACTGGACACGTAACTCCTGGAGATACTTTTGTTAGGATTGAGAAGGGGGAGCTACTTTCTGGAACCCTTTGCAAGAAGGCTCTTGGAACATCAACTGGAAGTCTTATACATAATGCTTTTAGCATTGGGATTGGGGATACAATTGCTGATGCAGCAACCATGGAGAAAATTAATGAAACTATCTCTGCTGCTAAAAATGAAGTGAAAAACCTCATAAAGAAAGCCCAAGAACGGAGTTTAGAGCCTGAACCTGGACGAACAATGATGGATTCATTTGAAAACAAAGTGAATCAAGTCCTGAATAAGGCTCGTGATGATGCTGGTAGTAGTGCACAAAAAAGTTTGTCAGAGAGTAACAATTTGAAAGCTATGGTCACTGCAGGATCCAAGGGCAGTTTTATCAACATCTCCCAGATGACTGCTTGTGTGGGGCAGCAGAATGTTGAAGGGAAGCGAATACCATTTGGTTTCATTGATCGAACATTGCCCCATTTCACTAAAGATGATTATGGGCCTGAAAGTCGTGGCTTTGTTGAGAACTCGTATCTTCGAGGTTTGACTCCACAGGAGTTCTTTTTTCATGCTATGGGTGGTAGGGAAGGTCTTATTGATACTGCAGTCAAGACATCTGAAACAGGGTACATCCAGAGGAGGCTGGTGAAGGCCATGGAGGATATCATGGTTAAATATGATGGGACTGTTAGAAACTCATTGGGTGATGTTATTCAGTTCCTGTATGGTGAAGATGGTATGGACGCTGTTTGGATAGAATCTCAGAAACTTGATTCTTTGAAAATGAAGAAAAAGGAATTTGAGAGGATCTTCAGGTACGAGTTTGAAGATGAAAACTGGAAGCCAAATTACATGTTGCCAGAGCATGTAGAAGATTTGAAAACCATCCGAGAATTCCGGAATGTGTTCGAGGCTGAAGTTCAAAAGCTTGAAGCAGACAGGTATCAATTAGGAACAGAAATTGCAACTACAGGTGAAAACTCTTGGCCAATGCCAGTTAACCTGAAAAGGCTAATTCAGAATGCACAGAAAACTTTCAAGATTGACTTTCGAAGGGCTTCTGACATGCATCCTATGGAAATTGTTGAAGCTATTGATAAACTTCAAGAGAGGCTGAAGGTTGTTCCTGGTGAAGATCCTCTAAGTGTGGAGGCTCAAAAGAATGCCACCCTTTTCTTCAATATATTACTCCGAAGCACTTTTGCTAGCAAAAGGGTTTTGGATGAATACAGGCTTACTCGTGAAGCATTCGAGTGGGTTATTGGAGAAATAGAATCACGCTTCCTTCAGTCACTAGTAGCACCTGGTGAAATGATTGGCTGTGTTGCTGCACAGTCCATTGGAGAGCCGGCAACTCAGATGACTCTTAATACCTTCCATTATGCTGGTGTTAGTGCCAAGAATGTCACTCTTGGTGTTCCCAGATTGAGGGAAATCATTAATGTAGCCAAGAGAATCAAAACACCTTCTCTTTCTGTCTATCTAAAACCCGAAGCTAATAAAACCAAGGAGAGAGCGAAGACTGTTCAATGTGCTCTGGAATATACTACTCTTAGAAGTGTTACACAAGCGACGGAAGTATGGTATGATCCTGACCCCATGAGCACGATTATTGAAGAGGATATTGATTTTGTAAAATCCTATTATGAGATGCCAGATGAGGAAATTGCTCCTGAGAAAATCTCCCCATGGTTGCTTCGTATAGAGTTGAATCGTGAAATGATGGTGGATAAGAAACTAAGCATGGCCAATATTGCTGAGAAGATCAACCTTGAATTTGATGATGATTTGACTTGCATATTTAATGATGATAATGCTGAGAAGCTGATACTTCGTATACGTATCATGAATGATGAAGCTCCAAAGGGGGAGTTGACTGATGAATCAGCTGAAGACGACGTGTTCTTGAAGAAAATTGAGAGTAATATGCTAACTGAAATGGCTCTTCGAGGAATACCAGACATCAACAAGGTTTTCATTAAATGTGGTAAAGTGAACAAGTTCGATGAGAATGAGGGTTTTAAACCAGAGATGGAGTGGATGTTGGATACAGAAGGTGTCAATCTTTTAGCCGTCATGTGTCATGAAGATGTTGATGCGAGGAGGACCACAAGCAACCATTTGATTGAAGTTATTGAAGTTCTTGGAATTGAAGCAGTTCGGCGTTCTCTTCTGGATGAATTGCGTGTTGTTATATCCTTTGATGGTTCTTATGTTAATTACAGACATCTTGCCATCCTTTGTGACACAATGACTTATCGTGGCCACTTGATGGCTATTACTCGTCATGGTATTAATAGAAATGATACTGGACCAATGATGAGATGCTCATTTGAAGAAACTGTGGATATCTTACTTGATGCTGCAGTATATGCTGAAACTGACCACTTAAGGGGTGTAACTGAAAATATAATGTTGGGTCAGCTGGCCCCCATAGGAACTGGAGGCTGTGCTCTGTATCTCAATGATGAGATGTTGAAGAATGCTATTGAGCTCCAGCTGCCTAGTTACATTGACGGTCTGGATTTTGGCATGACACCTTCCCGTTCCCCAATCTCAGGAACTCCTTATCATGAAGGGATGATGTCTCCTAATTATTTGTTGAGCCCAAATCTCCGCCTATCACCTATCAGCGATGCTCAATTTTCACCCTATGTAGGAGGAATGGCATTCTCTCCTACGTCATCTCCAGGCTATAGCCCATCGTCTCCGGGCTACAGTCCATCATCCCCTGGCTATAGTCCCACATCTCCTGGTTATAGTCCTACTTCTCCGGGATACAGCCCTACCTCTCCGGGATACAGTCCAACATCTCCAACATACAGTCCTAGTTCGCCGGGCTATAGCCCAACTAGTCCTGCATATTCTCCTACAAGTCCATCTTATTCACCCACCTCTCCCAGTTACAGCCCAACCTCTCCAAGTTACAGCCCCACCTCTCCTAGTTACAGCCCCACATCACCTAGTTACAGCCCCACTTCCCCAAGCTACAGCCCCACTTCTCCTGCTTACAGTCCAACTTCACCTGCTTACAGTCCCACTTCCCCTGCATATAGCCCAACTTCACCCTCCTACAGCCCAACTTCCCCCTCCTACAGCCCAACTTCACCCTCCTACAGCCCAACATCTCCCTCCTACAGCCCAACATCTCCGTCTTACAGTCCCACATCACCTTCCCCAACGTCGCCATCATATTCTCCTACTTCTCCAGCATATTCTCCATCCAGCCCGACCTACAGTCCTAGCAGTCCATATAATACAGGACCCAGCCCAGACTACAGCCCTAGTTCTCCACAGTACAGTCCAAGTGCAGGGTACTCACCTACTGCTCCTGGGTATTCTCCATCATCTACTAGTCAGTACACTCCACAAACAAGTGACAAGGATGATAGGAGTAGAAAGGATGATAGGAACAATCGATGATGAGAGTTCCAAAGCAAATATCCTTGAAGGAAGAGGGTAAAGTTCTTGAAGCCCTGATTTGACTGATGATGAAAAAAGGAGGCTAACTGGTTCGTTTAGTTTTCCTGAATAATTGATCTTCAGGATGTTTGTGGGTTTCTCATCTTGATGCCTGCCGTCATTTCTGGATATGGACTTGGAAAGGGCGTTGTTTCTTAGTTAGCTATTTTCGAAAAAATTGGCTGGGTAGATATTATTTAGTAAGGTTGAATTATCCTCTAGGAAGACTCCTTTTGAGTGTACTAGAGTGTATACATGAAGTATCTTTATATAGTCAGAAAGAAATATAATGAAGAATACTAAAGTCGACAAAATCAGAGATTTTGGTTATCATACGAGTAGCTGACGTTTTATATGGATATTGTGATTCGTGTCTCCCCACCCCACCCCCAAAGGGGGAAAAAGAAGTTTCAAAGCATATCCAACATTTATAAGGTAATTACATGGAGTTTTTTGTGTAATATTTGACATGGAAATTAGCATAGGAACTATATAGGATTTAAGTGAAGTAGCTACCCTTTTGTTCGGGTTGGTGTTGGTGTTTTTGTATATTCTTTCATTTGTCTTAATTGAAACGTGGTTTCTTATCTTGAGATTCGAATGATTTTGCACTTTGCTTCATTGTAAAAGTGAACTGATTGTGCAGGTAATTTGTAAATGTCAGGCCCTCGAATTTCAAACGAGAAGAGGCAAATAAACAACCAGATACACCAAGGCAGCATGTTGCTCGGATTGGACACACTATTACATCACTTAGGCTTTCACAAGCTTGTTCATTTCTGCTTTGAAGGATCTGTCAAACATATTACAAGCAAAAACTTATTCCCTCACAATTTTAGCCATACGTTCCATGTAATTTTGTACCCATGCCAAATAGTAGATCATTATTTGAATTAACCTGTATTTTGTGTGTTGATGTCGGAACTCTTTTAAAATGTTGTTCCCTTCTCAGATTAAATGATAATGTTTCTCAACCATAAACTATAAAGTCATATACTATTTTAGTCTTTTATTAAAACGTTTTGATCCCTCTACTTGAAGAATGTTCATTTATTTCTA

Coding sequence (CDS)

ATGGATTTGCGATTTCCTTACTCTCCGGCAGAGGTTGCCAAAGTCCGAATGGTTCAGTTTGGCATTCTTAGCCCCGACGAGATTAGGCAAATGTCCGTGGTACAGATTGAGCACGGTGAAACCACAGAGAGGGGTAAGCCAAAAGTAGCTGGTTTGAGTGACCCGCGACTTGGTACAATCGACAGAAAAATGAAGTGTGAAACTTGCACTGCAAATATGGCTGAGTGTCCTGGGCACTTTGGGCACCTTGAGCTTGCCAAACCAATGTTCCATATTGGGTTTATGAAGACCGTACTCACTATTATGCGTTCTGTGTGCTTCAATTGCTCAAAGATTCTAGTTGACGAGGAAGATCCCAAGTTTAAACAAGCATTGCGGATAAAGAATCCTAAGAATAGACTTAGAAAGATTTTGGATGCCTGCAAGAACAAAACCAAGTGTGAGGGTGGCGATGAAATCGATGTTCAAGGTCAAGATTCCGATCAACCAGTAAAAAAAAGTCGGGGTGGCTGTGGTGCTCAGCAACCTAAGATCACAATTGAGGGTATGAAGATGACTGCAGAGTACAAGGCCCAAAGGAAAAAAAATGATGATCAGGAGCAGCTGCCTGAGCCTGTGGAAAGAAAACAAACACTTACTGCTGAAAGGGTTCTTGGCATCCTGAAAAGAATAACTGATGATGATTGCAAACTCTTGGGCCTCAATCCAAAGTATGCACGGCCTGACTGGATGATTCTGCAAGTCCTTCCAATTCCGCCTCCTCCTGTGAGACCATCAGTTATGATGGACACCTCATCTAGAAGTGAGGACGATCTAACTCATCAGTTGGCAATGATTATAAGGCACAATGAAAACCTCAGGAGACAAGAGAGAAATGGTTCTCCAGCACATATCATTTCAGAGTTTGCGCAACTACTGCAGTTTCATATAGCCACATATTTTGATAATGAATTACCTGGACTACCCAGGGCCACACAGAGATCTGGGAGGCCCATTAAATCTATTTGTAGCAGGCTCAAGGCAAAGGAAGGCCGGATAAGAGGAAATTTGATGGGAAAACGTGTAGATTTTTCAGCACGAACTGTTATAACACCTGATCCAACCATTAATATTGATGAACTGGGGGTACCTTGGAGTATTGCTTTGAACCTTACATATCCAGAGACTGTGACACCTTATAATATTGAAAGGTTAAAGGAACTTGTTGAATATGGTCCCCATCCTCCACCTGGTAAAACTGGTGCCAAGTACATCATACGAGATGATGGGCAGAGGCTTGATCTTCGTTATCTTAAAAAAAGTAGTGATCATCATTTGGAGCTTGGATGGGATAATGAAACTGCATTGGTAAATTTGCAGGATGTTTTCATGAATATTTTGATGTGGTGGGAAGACTTTGACGGGAAAATTCCTGCCCCTGCAATTTTAAAGCCACAACCTCTTTGGACGGGAAAGCAAATCAATCTCACGAGAACTTCTGCCTGGCATTCTGAATCCGAAACTGGACACGTAACTCCTGGAGATACTTTTGTTAGGATTGAGAAGGGGGAGCTACTTTCTGGAACCCTTTGCAAGAAGGCTCTTGGAACATCAACTGGAAGTCTTATACATAATGCTTTTAGCATTGGGATTGGGGATACAATTGCTGATGCAGCAACCATGGAGAAAATTAATGAAACTATCTCTGCTGCTAAAAATGAAGTGAAAAACCTCATAAAGAAAGCCCAAGAACGGAGTTTAGAGCCTGAACCTGGACGAACAATGATGGATTCATTTGAAAACAAAGTGAATCAAGTCCTGAATAAGGCTCGTGATGATGCTGGTAGTAGTGCACAAAAAAGTTTGTCAGAGAGTAACAATTTGAAAGCTATGGTCACTGCAGGATCCAAGGGCAGTTTTATCAACATCTCCCAGATGACTGCTTGTGTGGGGCAGCAGAATGTTGAAGGGAAGCGAATACCATTTGGTTTCATTGATCGAACATTGCCCCATTTCACTAAAGATGATTATGGGCCTGAAAGTCGTGGCTTTGTTGAGAACTCGTATCTTCGAGGTTTGACTCCACAGGAGTTCTTTTTTCATGCTATGGGTGGTAGGGAAGGTCTTATTGATACTGCAGTCAAGACATCTGAAACAGGGTACATCCAGAGGAGGCTGGTGAAGGCCATGGAGGATATCATGGTTAAATATGATGGGACTGTTAGAAACTCATTGGGTGATGTTATTCAGTTCCTGTATGGTGAAGATGGTATGGACGCTGTTTGGATAGAATCTCAGAAACTTGATTCTTTGAAAATGAAGAAAAAGGAATTTGAGAGGATCTTCAGGTACGAGTTTGAAGATGAAAACTGGAAGCCAAATTACATGTTGCCAGAGCATGTAGAAGATTTGAAAACCATCCGAGAATTCCGGAATGTGTTCGAGGCTGAAGTTCAAAAGCTTGAAGCAGACAGGTATCAATTAGGAACAGAAATTGCAACTACAGGTGAAAACTCTTGGCCAATGCCAGTTAACCTGAAAAGGCTAATTCAGAATGCACAGAAAACTTTCAAGATTGACTTTCGAAGGGCTTCTGACATGCATCCTATGGAAATTGTTGAAGCTATTGATAAACTTCAAGAGAGGCTGAAGGTTGTTCCTGGTGAAGATCCTCTAAGTGTGGAGGCTCAAAAGAATGCCACCCTTTTCTTCAATATATTACTCCGAAGCACTTTTGCTAGCAAAAGGGTTTTGGATGAATACAGGCTTACTCGTGAAGCATTCGAGTGGGTTATTGGAGAAATAGAATCACGCTTCCTTCAGTCACTAGTAGCACCTGGTGAAATGATTGGCTGTGTTGCTGCACAGTCCATTGGAGAGCCGGCAACTCAGATGACTCTTAATACCTTCCATTATGCTGGTGTTAGTGCCAAGAATGTCACTCTTGGTGTTCCCAGATTGAGGGAAATCATTAATGTAGCCAAGAGAATCAAAACACCTTCTCTTTCTGTCTATCTAAAACCCGAAGCTAATAAAACCAAGGAGAGAGCGAAGACTGTTCAATGTGCTCTGGAATATACTACTCTTAGAAGTGTTACACAAGCGACGGAAGTATGGTATGATCCTGACCCCATGAGCACGATTATTGAAGAGGATATTGATTTTGTAAAATCCTATTATGAGATGCCAGATGAGGAAATTGCTCCTGAGAAAATCTCCCCATGGTTGCTTCGTATAGAGTTGAATCGTGAAATGATGGTGGATAAGAAACTAAGCATGGCCAATATTGCTGAGAAGATCAACCTTGAATTTGATGATGATTTGACTTGCATATTTAATGATGATAATGCTGAGAAGCTGATACTTCGTATACGTATCATGAATGATGAAGCTCCAAAGGGGGAGTTGACTGATGAATCAGCTGAAGACGACGTGTTCTTGAAGAAAATTGAGAGTAATATGCTAACTGAAATGGCTCTTCGAGGAATACCAGACATCAACAAGGTTTTCATTAAATGTGGTAAAGTGAACAAGTTCGATGAGAATGAGGGTTTTAAACCAGAGATGGAGTGGATGTTGGATACAGAAGGTGTCAATCTTTTAGCCGTCATGTGTCATGAAGATGTTGATGCGAGGAGGACCACAAGCAACCATTTGATTGAAGTTATTGAAGTTCTTGGAATTGAAGCAGTTCGGCGTTCTCTTCTGGATGAATTGCGTGTTGTTATATCCTTTGATGGTTCTTATGTTAATTACAGACATCTTGCCATCCTTTGTGACACAATGACTTATCGTGGCCACTTGATGGCTATTACTCGTCATGGTATTAATAGAAATGATACTGGACCAATGATGAGATGCTCATTTGAAGAAACTGTGGATATCTTACTTGATGCTGCAGTATATGCTGAAACTGACCACTTAAGGGGTGTAACTGAAAATATAATGTTGGGTCAGCTGGCCCCCATAGGAACTGGAGGCTGTGCTCTGTATCTCAATGATGAGATGTTGAAGAATGCTATTGAGCTCCAGCTGCCTAGTTACATTGACGGTCTGGATTTTGGCATGACACCTTCCCGTTCCCCAATCTCAGGAACTCCTTATCATGAAGGGATGATGTCTCCTAATTATTTGTTGAGCCCAAATCTCCGCCTATCACCTATCAGCGATGCTCAATTTTCACCCTATGTAGGAGGAATGGCATTCTCTCCTACGTCATCTCCAGGCTATAGCCCATCGTCTCCGGGCTACAGTCCATCATCCCCTGGCTATAGTCCCACATCTCCTGGTTATAGTCCTACTTCTCCGGGATACAGCCCTACCTCTCCGGGATACAGTCCAACATCTCCAACATACAGTCCTAGTTCGCCGGGCTATAGCCCAACTAGTCCTGCATATTCTCCTACAAGTCCATCTTATTCACCCACCTCTCCCAGTTACAGCCCAACCTCTCCAAGTTACAGCCCCACCTCTCCTAGTTACAGCCCCACATCACCTAGTTACAGCCCCACTTCCCCAAGCTACAGCCCCACTTCTCCTGCTTACAGTCCAACTTCACCTGCTTACAGTCCCACTTCCCCTGCATATAGCCCAACTTCACCCTCCTACAGCCCAACTTCCCCCTCCTACAGCCCAACTTCACCCTCCTACAGCCCAACATCTCCCTCCTACAGCCCAACATCTCCGTCTTACAGTCCCACATCACCTTCCCCAACGTCGCCATCATATTCTCCTACTTCTCCAGCATATTCTCCATCCAGCCCGACCTACAGTCCTAGCAGTCCATATAATACAGGACCCAGCCCAGACTACAGCCCTAGTTCTCCACAGTACAGTCCAAGTGCAGGGTACTCACCTACTGCTCCTGGGTATTCTCCATCATCTACTAGTCAGTACACTCCACAAACAAGTGACAAGGATGATAGGAGTAGAAAGGATGATAGGAACAATCGATGA

Protein sequence

MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKITIEGMKMTAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGILKRITDDDCKLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGWDNETALVNLQDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQINLTRTSAWHSESETGHVTPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGPSPDYSPSSPQYSPSAGYSPTAPGYSPSSTSQYTPQTSDKDDRSRKDDRNNR

Homology

[Close]

BLAST of MELO3C013741 vs. NCBI nr
Match: XP_008448514.2 (PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit 1 [Cucumis melo])

HSP 1 Score: 3102.4 bits (8042), Expect = 0.0e+00
Identity = 1637/1838 (89.06%), Postives = 1639/1838 (89.17%), Query Frame = 0


Query: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
            MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120

Query: 121  FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKITI 180
            FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKITI
Sbjct: 121  FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKITI 180

Query: 181  EGMKMTAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGILKRITDDDCKLLGLNPKYAR 240
            EGMKMTAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGILKRITDDDCKLLGLNPKYAR
Sbjct: 181  EGMKMTAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGILKRITDDDCKLLGLNPKYAR 240

Query: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
            PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300

Query: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
            EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
            TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 421  DDGQRLDLRYLKKSSDHHLELGW-------DNETALVNLQ-------------------- 480
            DDGQRLDLRYLKKSSDHHLELG+       D +  L N Q                    
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 481  ------------------------------------------------------------ 540
                                                                        
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 541  ----------------DVFMNILMWWEDFDGKIPAPAILKPQPLWTG---------KQIN 600
                            DVFMNILMWWEDFDGKIPAPAILKPQPLWTG         KQIN
Sbjct: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600

Query: 601  LTRTSAWHSESETGHVTPGDTFVRIEKGELLSGTLCKKALGTSTGSLIH----------- 660
            LTRTSAWHSESETGHVTPGDTFVRIEKGELLSGTLCKKALGTSTGSLIH           
Sbjct: 601  LTRTSAWHSESETGHVTPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660

Query: 661  -----------------NAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
                             NAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720

Query: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
            EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
            ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900

Query: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960
            LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ
Sbjct: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960

Query: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
            LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP
Sbjct: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020

Query: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
            GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140

Query: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200
            PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200

Query: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
            APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320
            NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320

Query: 1321 EMEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
            EMEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440

Query: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500
            LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500

Query: 1501 YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560
            YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
Sbjct: 1501 YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560

Query: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620
            SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
Sbjct: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620

Query: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1645
            SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1680

[Close]

BLAST of MELO3C013741 vs. NCBI nr
Match: XP_038904743.1 (DNA-directed RNA polymerase II subunit RPB1 [Benincasa hispida])

HSP 1 Score: 3083.5 bits (7993), Expect = 0.0e+00
Identity = 1628/1847 (88.14%), Postives = 1634/1847 (88.47%), Query Frame = 0


Query: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
            MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILV E+DPK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVSEDDPK 120

Query: 121  FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKITI 180
            FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQ+SDQP KK RGGCGAQQPKITI
Sbjct: 121  FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQESDQPAKKGRGGCGAQQPKITI 180

Query: 181  EGMKMTAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGILKRITDDDCKLLGLNPKYAR 240
            EGMKMTAEYK QRKKNDDQEQLPEPVERKQTLTAERVLGILKRITD+DCKLLGLNPKYAR
Sbjct: 181  EGMKMTAEYKPQRKKNDDQEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240

Query: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
            PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300

Query: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
            EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
            TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 421  DDGQRLDLRYLKKSSDHHLELGW-------DNETALVNLQ-------------------- 480
            DDGQRLDLRYLKKSSDHHLELG+       D +  L N Q                    
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 481  ------------------------------------------------------------ 540
                                                                        
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 541  ----------------DVFMNILMWWEDFDGKIPAPAILKPQPLWTG---------KQIN 600
                            DVFMNILMWWEDFDGKIPAPAILKPQPLWTG         KQIN
Sbjct: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600

Query: 601  LTRTSAWHSESETGHVTPGDTFVRIEKGELLSGTLCKKALGTSTGSLIH----------- 660
            LTRTSAWHSESETG +TPGDTFVRIEKGELLSGTLCKKALGTSTGSLIH           
Sbjct: 601  LTRTSAWHSESETGFITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660

Query: 661  -----------------NAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
                             NAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720

Query: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
            EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
            ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900

Query: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960
            LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ
Sbjct: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960

Query: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
            LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP
Sbjct: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020

Query: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
            GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140

Query: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200
            PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200

Query: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
            APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320
            NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320

Query: 1321 EMEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
            EMEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440

Query: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500
            LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500

Query: 1501 YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560
            YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
Sbjct: 1501 YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560

Query: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620
            SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
Sbjct: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620

Query: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1645
            SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1680

[Close]

BLAST of MELO3C013741 vs. NCBI nr
Match: XP_004146161.3 (DNA-directed RNA polymerase II subunit 1 [Cucumis sativus] >XP_011650276.2 DNA-directed RNA polymerase II subunit 1 [Cucumis sativus] >KAE8649994.1 hypothetical protein Csa_011172 [Cucumis sativus])

HSP 1 Score: 3083.1 bits (7992), Expect = 0.0e+00
Identity = 1630/1853 (87.97%), Postives = 1635/1853 (88.24%), Query Frame = 0


Query: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
            MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120

Query: 121  FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKITI 180
            FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKI+I
Sbjct: 121  FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180

Query: 181  EGMKMTAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGILKRITDDDCKLLGLNPKYAR 240
            EGMKMTAEYKAQRKKNDD EQLPEPVERKQTLTAERVLGILKRITD+DCKLLGLNPKYAR
Sbjct: 181  EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240

Query: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
            PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300

Query: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
            EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
            TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 421  DDGQRLDLRYLKKSSDHHLELGW-------DNETALVNLQ-------------------- 480
            DDGQRLDLRYLKKSSDHHLELG+       D +  L N Q                    
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 481  ------------------------------------------------------------ 540
                                                                        
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 541  ----------------DVFMNILMWWEDFDGKIPAPAILKPQPLWTG---------KQIN 600
                            DVFMN LMWWEDFDGKIPAPAILKPQPLWTG         KQIN
Sbjct: 541  LLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600

Query: 601  LTRTSAWHSESETGHVTPGDTFVRIEKGELLSGTLCKKALGTSTGSLIH----------- 660
            LTRTSAWHSESETGH+TPGDTFVRIEKGELLSGTLCKKALGTSTGSLIH           
Sbjct: 601  LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660

Query: 661  -----------------NAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
                             NAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720

Query: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
            EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
            ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900

Query: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960
            LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ
Sbjct: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960

Query: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
            LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP
Sbjct: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020

Query: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
            GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140

Query: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200
            PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200

Query: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
            APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320
            NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320

Query: 1321 EMEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
            EMEWMLDTEGVNLLAVM HEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440

Query: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500
            LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500

Query: 1501 YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560
            YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
Sbjct: 1501 YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560

Query: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620
            SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
Sbjct: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620

Query: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1644
            SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1680

[Close]

BLAST of MELO3C013741 vs. NCBI nr
Match: TYK11392.1 (DNA-directed RNA polymerase II subunit 1 [Cucumis melo var. makuwa])

HSP 1 Score: 3078.5 bits (7980), Expect = 0.0e+00
Identity = 1637/1889 (86.66%), Postives = 1639/1889 (86.77%), Query Frame = 0


Query: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEI-------------------------------- 60
            MDLRFPYSPAEVAKVRMVQFGILSPDEI                                
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIVILLPTPPQFSFILSDSVLILRGCSWVKNALH 60

Query: 61   ---RQMSVVQIEHGETTERGKPKVAGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLEL 120
               RQMSVVQIEHGETTERGKPKVAGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLEL
Sbjct: 61   LYERQMSVVQIEHGETTERGKPKVAGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLEL 120

Query: 121  AKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQALRIKNPKNRLRKILDACKNKT 180
            AKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQALRIKNPKNRLRKILDACKNKT
Sbjct: 121  AKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQALRIKNPKNRLRKILDACKNKT 180

Query: 181  KCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKITIEGMKMTAEYKAQRKKNDDQEQLPEP 240
            KCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKITIEGMKMTAEYKAQRKKNDDQEQLPEP
Sbjct: 181  KCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKITIEGMKMTAEYKAQRKKNDDQEQLPEP 240

Query: 241  VERKQTLTAERVLGILKRITDDDCKLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTS 300
            VERKQTLTAERVLGILKRITDDDCKLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTS
Sbjct: 241  VERKQTLTAERVLGILKRITDDDCKLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTS 300

Query: 301  SRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRAT 360
            SRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRAT
Sbjct: 301  SRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRAT 360

Query: 361  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLT 420
            QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLT
Sbjct: 361  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLT 420

Query: 421  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGW-- 480
            YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELG+  
Sbjct: 421  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKV 480

Query: 481  -----DNETALVNLQ--------------------------------------------- 540
                 D +  L N Q                                             
Sbjct: 481  ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 540

Query: 541  ---------------------------------------------------DVFMNILMW 600
                                                               DVFMNILMW
Sbjct: 541  QSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNILMW 600

Query: 601  WEDFDGKIPAPAILKPQPLWTG---------KQINLTRTSAWHSESETGHVTPGDTFVRI 660
            WEDFDGKIPAPAILKPQPLWTG         KQINLTRTSAWHSESETGHVTPGDTFVRI
Sbjct: 601  WEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQINLTRTSAWHSESETGHVTPGDTFVRI 660

Query: 661  EKGELLSGTLCKKALGTSTGSLIH----------------------------NAFSIGIG 720
            EKGELLSGTLCKKALGTSTGSLIH                            NAFSIGIG
Sbjct: 661  EKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 720

Query: 721  DTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARD 780
            DTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARD
Sbjct: 721  DTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARD 780

Query: 781  DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHF 840
            DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHF
Sbjct: 781  DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHF 840

Query: 841  TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 900
            TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED
Sbjct: 841  TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 900

Query: 901  IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFEDENWK 960
            IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFEDENWK
Sbjct: 901  IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFEDENWK 960

Query: 961  PNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIQN 1020
            PNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIQN
Sbjct: 961  PNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIQN 1020

Query: 1021 AQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTF 1080
            AQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTF
Sbjct: 1021 AQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTF 1080

Query: 1081 ASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1140
            ASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY
Sbjct: 1081 ASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1140

Query: 1141 AGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSV 1200
            AGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSV
Sbjct: 1141 AGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSV 1200

Query: 1201 TQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLS 1260
            TQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLS
Sbjct: 1201 TQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLS 1260

Query: 1261 MANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESAEDDVFLKKIES 1320
            MANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESAEDDVFLKKIES
Sbjct: 1261 MANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESAEDDVFLKKIES 1320

Query: 1321 NMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVMCHEDVDAR 1380
            NMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVMCHEDVDAR
Sbjct: 1321 NMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVMCHEDVDAR 1380

Query: 1381 RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 1440
            RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT
Sbjct: 1381 RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 1440

Query: 1441 RHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYL 1500
            RHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYL
Sbjct: 1441 RHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYL 1500

Query: 1501 NDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSPISDAQ 1560
            NDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSPISDAQ
Sbjct: 1501 NDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSPISDAQ 1560

Query: 1561 FSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTY 1620
            FSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTY
Sbjct: 1561 FSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTY 1620

Query: 1621 SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1645
            SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
Sbjct: 1621 SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1680

[Close]

BLAST of MELO3C013741 vs. NCBI nr
Match: KAA0052935.1 (DNA-directed RNA polymerase II subunit 1 [Cucumis melo var. makuwa])

HSP 1 Score: 3077.0 bits (7976), Expect = 0.0e+00
Identity = 1637/1893 (86.48%), Postives = 1639/1893 (86.58%), Query Frame = 0


Query: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEI-------------------------------- 60
            MDLRFPYSPAEVAKVRMVQFGILSPDEI                                
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIVILLPTPPQFSFILSDSVLILRGCSWVKNALH 60

Query: 61   ---RQMSVVQIEHGETTERGKPKVAGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLEL 120
               RQMSVVQIEHGETTERGKPKVAGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLEL
Sbjct: 61   LYERQMSVVQIEHGETTERGKPKVAGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLEL 120

Query: 121  AKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQALRIKNPKNRLRKILDACKNKT 180
            AKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQALRIKNPKNRLRKILDACKNKT
Sbjct: 121  AKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQALRIKNPKNRLRKILDACKNKT 180

Query: 181  KCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKITIEGMKMTAEYKAQRKKNDDQEQLPEP 240
            KCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKITIEGMKMTAEYKAQRKKNDDQEQLPEP
Sbjct: 181  KCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKITIEGMKMTAEYKAQRKKNDDQEQLPEP 240

Query: 241  VERKQTLTAERVLGILKRITDDDCKLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTS 300
            VERKQTLTAERVLGILKRITDDDCKLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTS
Sbjct: 241  VERKQTLTAERVLGILKRITDDDCKLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTS 300

Query: 301  SRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRAT 360
            SRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRAT
Sbjct: 301  SRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRAT 360

Query: 361  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLT 420
            QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLT
Sbjct: 361  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLT 420

Query: 421  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGW-- 480
            YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELG+  
Sbjct: 421  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKA 480

Query: 481  ---------DNETALVNLQ----------------------------------------- 540
                     D +  L N Q                                         
Sbjct: 481  RFSVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMN 540

Query: 541  -------------------------------------------------------DVFMN 600
                                                                   DVFMN
Sbjct: 541  MHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMN 600

Query: 601  ILMWWEDFDGKIPAPAILKPQPLWTG---------KQINLTRTSAWHSESETGHVTPGDT 660
            ILMWWEDFDGKIPAPAILKPQPLWTG         KQINLTRTSAWHSESETGHVTPGDT
Sbjct: 601  ILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQINLTRTSAWHSESETGHVTPGDT 660

Query: 661  FVRIEKGELLSGTLCKKALGTSTGSLIH----------------------------NAFS 720
            FVRIEKGELLSGTLCKKALGTSTGSLIH                            NAFS
Sbjct: 661  FVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFS 720

Query: 721  IGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLN 780
            IGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLN
Sbjct: 721  IGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLN 780

Query: 781  KARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRT 840
            KARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRT
Sbjct: 781  KARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRT 840

Query: 841  LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK 900
            LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK
Sbjct: 841  LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK 900

Query: 901  AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFED 960
            AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFED
Sbjct: 901  AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFED 960

Query: 961  ENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKR 1020
            ENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKR
Sbjct: 961  ENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKR 1020

Query: 1021 LIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILL 1080
            LIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILL
Sbjct: 1021 LIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILL 1080

Query: 1081 RSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLN 1140
            RSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLN
Sbjct: 1081 RSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLN 1140

Query: 1141 TFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTT 1200
            TFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTT
Sbjct: 1141 TFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTT 1200

Query: 1201 LRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVD 1260
            LRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVD
Sbjct: 1201 LRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVD 1260

Query: 1261 KKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESAEDDVFLK 1320
            KKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESAEDDVFLK
Sbjct: 1261 KKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESAEDDVFLK 1320

Query: 1321 KIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVMCHED 1380
            KIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVMCHED
Sbjct: 1321 KIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVMCHED 1380

Query: 1381 VDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHL 1440
            VDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHL
Sbjct: 1381 VDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHL 1440

Query: 1441 MAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGC 1500
            MAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGC
Sbjct: 1441 MAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGC 1500

Query: 1501 ALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSPI 1560
            ALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSPI
Sbjct: 1501 ALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSPI 1560

Query: 1561 SDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPT 1620
            SDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPT
Sbjct: 1561 SDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPT 1620

Query: 1621 SPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1645
            SPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
Sbjct: 1621 SPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1680

[Close]

BLAST of MELO3C013741 vs. ExPASy Swiss-Prot
Match: P18616 (DNA-directed RNA polymerase II subunit RPB1 OS=Arabidopsis thaliana OX=3702 GN=NRPB1 PE=1 SV=3)

HSP 1 Score: 2721.0 bits (7052), Expect = 0.0e+00
Identity = 1425/1830 (77.87%), Postives = 1541/1830 (84.21%), Query Frame = 0


Query: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
            MD RFP+SPAEV+KVR+VQFGILSPDEIRQMSV+ +EH ETTE+GKPKV GLSD RLGTI
Sbjct: 1    MDTRFPFSPAEVSKVRVVQFGILSPDEIRQMSVIHVEHSETTEKGKPKVGGLSDTRLGTI 60

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
            DRK+KCETC ANMAECPGHFG+LELAKPM+H+GFMKTVL+IMR VCFNCSKIL DEE+ K
Sbjct: 61   DRKVKCETCMANMAECPGHFGYLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEEEHK 120

Query: 121  FKQALRIKNPKNRLRKILDACKNKTKCEGGDEI-DVQGQDSDQPVKKSRGGCGAQQPKIT 180
            FKQA++IKNPKNRL+KILDACKNKTKC+GGD+I DVQ   +D+PVKKSRGGCGAQQPK+T
Sbjct: 121  FKQAMKIKNPKNRLKKILDACKNKTKCDGGDDIDDVQSHSTDEPVKKSRGGCGAQQPKLT 180

Query: 181  IEGMKMTAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGILKRITDDDCKLLGLNPKYA 240
            IEGMKM AEYK QRKKND+ +QLPEP ERKQTL A+RVL +LKRI+D DC+LLG NPK+A
Sbjct: 181  IEGMKMIAEYKIQRKKNDEPDQLPEPAERKQTLGADRVLSVLKRISDADCQLLGFNPKFA 240

Query: 241  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHII 300
            RPDWMIL+VLPIPPPPVRPSVMMD +SRSEDDLTHQLAMIIRHNENL+RQE+NG+PAHII
Sbjct: 241  RPDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENLKRQEKNGAPAHII 300

Query: 301  SEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 360
            SEF QLLQFHIATYFDNELPG PRATQ+SGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 301  SEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 360

Query: 361  RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 420
            RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELV+YGPHPPPGKTGAKYII
Sbjct: 361  RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYII 420

Query: 421  RDDGQRLDLRYLKKSSDHHLELGW-------DNETALVNLQ------------------- 480
            RDDGQRLDLRYLKKSSD HLELG+       D +  L N Q                   
Sbjct: 421  RDDGQRLDLRYLKKSSDQHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYS 480

Query: 481  ------------------------------------------------------------ 540
                                                                        
Sbjct: 481  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 540

Query: 541  -----------------DVFMNILMWWEDFDGKIPAPAILKPQPLWTG---------KQI 600
                             DVFMN LMWWEDFDGK+PAPAILKP+PLWTG         KQI
Sbjct: 541  TLLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI 600

Query: 601  NLTRTSAWHSESETGHVTPGDTFVRIEKGELLSGTLCKKALGTSTGSLIH---------- 660
            NL R SAWH+++ETG +TPGDT VRIE+GELL+GTLCKK LGTS GSL+H          
Sbjct: 601  NLLRYSAWHADTETGFITPGDTQVRIERGELLAGTLCKKTLGTSNGSLVHVIWEEVGPDA 660

Query: 661  ------------------NAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERS 720
                              N F+IGIGDTIAD++TMEKINETIS AK  VK+LI++ Q + 
Sbjct: 661  ARKFLGHTQWLVNYWLLQNGFTIGIGDTIADSSTMEKINETISNAKTAVKDLIRQFQGKE 720

Query: 721  LEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 780
            L+PEPGRTM D+FEN+VNQVLNKARDDAGSSAQKSL+E+NNLKAMVTAGSKGSFINISQM
Sbjct: 721  LDPEPGRTMRDTFENRVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQM 780

Query: 781  TACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 840
            TACVGQQNVEGKRIPFGF  RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 781  TACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 840

Query: 841  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 900
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
Sbjct: 841  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 900

Query: 901  KLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRY 960
            KLDSLKMKK EF+R F+YE +DENW P Y+  EH+EDLK IRE R+VF+AE  KLE DR+
Sbjct: 901  KLDSLKMKKSEFDRTFKYEIDDENWNPTYLSDEHLEDLKGIRELRDVFDAEYSKLETDRF 960

Query: 961  QLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVV 1020
            QLGTEIAT G+++WP+PVN+KR I NAQKTFKID R+ SDMHP+EIV+A+DKLQERL VV
Sbjct: 961  QLGTEIATNGDSTWPLPVNIKRHIWNAQKTFKIDLRKISDMHPVEIVDAVDKLQERLLVV 1020

Query: 1021 PGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAP 1080
            PG+D LSVEAQKNATLFFNILLRST ASKRVL+EY+L+REAFEWVIGEIESRFLQSLVAP
Sbjct: 1021 PGDDALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVAP 1080

Query: 1081 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL 1140
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL
Sbjct: 1081 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL 1140

Query: 1141 KPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEE 1200
             PEA+K+KE AKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEED +FV+SYYEMPDE+
Sbjct: 1141 TPEASKSKEGAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDFEFVRSYYEMPDED 1200

Query: 1201 IAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRI 1260
            ++P+KISPWLLRIELNREMMVDKKLSMA+IAEKINLEFDDDLTCIFNDDNA+KLILRIRI
Sbjct: 1201 VSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAQKLILRIRI 1260

Query: 1261 MNDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFK 1320
            MNDE PKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK  + ++FDE  GFK
Sbjct: 1261 MNDEGPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQVRKSRFDEEGGFK 1320

Query: 1321 PEMEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1380
               EWMLDTEGVNLLAVMCHEDVD +RTTSNHLIE+IEVLGIEAVRR+LLDELRVVISFD
Sbjct: 1321 TSEEWMLDTEGVNLLAVMCHEDVDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFD 1380

Query: 1381 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD 1440
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAA YAETD
Sbjct: 1381 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETD 1440

Query: 1441 HLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGT 1500
             LRGVTENIMLGQLAPIGTG C LYLNDEMLKNAIELQLPSY+DGL+FGMTP+RSP+SGT
Sbjct: 1441 CLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAIELQLPSYMDGLEFGMTPARSPVSGT 1500

Query: 1501 PYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSP 1560
            PYHEGMMSPNYLLSPN+RLSP+SDAQFSPYVGGMAFSP+SSPGYSPSSPGYSP+SPGYSP
Sbjct: 1501 PYHEGMMSPNYLLSPNMRLSPMSDAQFSPYVGGMAFSPSSSPGYSPSSPGYSPTSPGYSP 1560

Query: 1561 TSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1620
            TSPGYSPTSPGYSPTSP YSP+SP YSP+SP YSPTSP+YSPTSPSYSPTSPSYSPTSPS
Sbjct: 1561 TSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1620

Query: 1621 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT 1641
            YSPTSPSYSPTSPSYSPTSP+YSPTSPAYSPTSPAYSPTSP+YSPTSPSYSPTSPSYSPT
Sbjct: 1621 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1680

[Close]

BLAST of MELO3C013741 vs. ExPASy Swiss-Prot
Match: P35084 (DNA-directed RNA polymerase II subunit rpb1 OS=Dictyostelium discoideum OX=44689 GN=polr2a PE=2 SV=2)

HSP 1 Score: 1864.7 bits (4829), Expect = 0.0e+00
Identity = 1026/1757 (58.39%), Postives = 1251/1757 (71.20%), Query Frame = 0


Query: 5    FPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTIDRKM 64
            FP S AE+ KV+ VQFGILSPDEIR MSV ++EH ET E GKPK  GL DP +GTID+  
Sbjct: 5    FPPSSAELRKVKRVQFGILSPDEIRNMSVARVEHPETYENGKPKAGGLLDPAMGTIDKTQ 64

Query: 65   KCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQA 124
            +C+TC+  MAECPGHFGH+ELAKP+FHIGF+ TVL I+R VC++CSK+L D  +  F+QA
Sbjct: 65   RCQTCSGTMAECPGHFGHIELAKPVFHIGFIDTVLKILRCVCYHCSKLLTDTNEHSFRQA 124

Query: 125  LRIKNPKNRLRKILDACKNKTKCE-GGDE-----IDVQGQDSDQPVKKSRGGCGAQQPKI 184
            L+I+N K+RL  ++D CKNK  C  GG+E     +    ++ D+PVK   GGCG   PKI
Sbjct: 125  LKIRNQKHRLNAVVDCCKNKKVCAIGGEEEEEHDLSKTDEELDKPVK--HGGCGNVLPKI 184

Query: 185  TIEGMKMTAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGILKRITDDDCKLLGLNPKY 244
            T E +K+  E+K         +   E +E+K  L+AERVL ILKRI D+D + +G+NP +
Sbjct: 185  TKEDLKIIVEFK---------DVTDESIEKKSVLSAERVLNILKRIKDEDSRAMGINPDW 244

Query: 245  ARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHI 304
            AR DWMI  VLP+PPPPVRPS+MMDTS+R EDDLTH+LA I++ N  L+RQE+NG+PAHI
Sbjct: 245  ARADWMIATVLPVPPPPVRPSIMMDTSTRGEDDLTHKLADIVKANRELQRQEKNGAPAHI 304

Query: 305  ISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFS 364
            I+E  Q LQFH+ATY DNE+PGLP+A QRSGRP+KSI  RLK KEGRIRGNLMGKRVDFS
Sbjct: 305  IAEATQFLQFHVATYVDNEIPGLPQAQQRSGRPLKSIRQRLKGKEGRIRGNLMGKRVDFS 364

Query: 365  ARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYI 424
            ARTVIT DP ++ID++GVP SIALNLTYPETVTP+NI++++EL+  GP   P   GAKYI
Sbjct: 365  ARTVITADPNLSIDQVGVPRSIALNLTYPETVTPFNIDKMRELIRNGPSEHP---GAKYI 424

Query: 425  IRDDGQRLDLRYLKKSSDHHLELGW-------DNETALVNLQ------------------ 484
            IR+DG R DLR++KK SD HLE G+       D +  + N Q                  
Sbjct: 425  IREDGTRFDLRFVKKVSDTHLECGYKVERHINDGDVVIFNRQPSLHKMSMMGHRIKVMPY 484

Query: 485  ------------------------------------------------------------ 544
                                                                        
Sbjct: 485  STFRLNLSVTSPYNADFDGDEMNLHVPQTLETRAEVIEIMMVPRQIVSPQSNRPVMGIVQ 544

Query: 545  ------------------DVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQ--------I 604
                              D+ MNILMW   +DGK+P PAILKP+ LWTGKQ        I
Sbjct: 545  DTLLGSRLFTKRDCFMEKDLVMNILMWLPSWDGKVPPPAILKPKQLWTGKQLFSLIIPDI 604

Query: 605  NLTRTSAWHSESETGHVTPGDTFVRIEKGELLSGTLCKKALGTSTGSLIH---------- 664
            NL R ++ H++ E    + GDT V IE+GELL+G LCK++LG + GS+IH          
Sbjct: 605  NLIRFTSTHNDKEPNECSAGDTRVIIERGELLAGILCKRSLGAANGSIIHVVMNEHGHDT 664

Query: 665  ------------------NAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERS 724
                                F++GIGDTIAD+ATM K+  TIS+AKN+VK LI KAQ + 
Sbjct: 665  CRLFIDQTQTVVNHWLINRGFTMGIGDTIADSATMAKVTLTISSAKNQVKELIIKAQNKQ 724

Query: 725  LEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 784
             E +PG++++++FE KVNQVLNKARD AGSSAQ SLSE NNLKAMVTAGSKGSFINISQM
Sbjct: 725  FECQPGKSVIETFEQKVNQVLNKARDTAGSSAQDSLSEDNNLKAMVTAGSKGSFINISQM 784

Query: 785  TACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 844
             ACVGQQNVEGKRIPFGF  RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 785  MACVGQQNVEGKRIPFGFQSRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 844

Query: 845  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 904
            EGLIDTAVKTSETGYIQRRLVKAMED+ +KYD TVRNSLGDVIQF YGEDG+D  ++E+Q
Sbjct: 845  EGLIDTAVKTSETGYIQRRLVKAMEDVSIKYDATVRNSLGDVIQFAYGEDGIDGCFVENQ 904

Query: 905  KLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRY 964
             +DSL+    E ER++R++ +  ++   +M P  +E ++     R+  E E +++++DR 
Sbjct: 905  SIDSLRKDNTELERMYRHQVDKPDYGDGWMDPLVIEHVRNDSLTRDTLEKEFERIKSDRS 964

Query: 965  QLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVV 1024
             L  EI  +GE +WP+PVNL+RLI NAQK F ID RR SD++P  +V  I+KL  RLK++
Sbjct: 965  LLRNEIIPSGEANWPLPVNLRRLINNAQKLFNIDIRRVSDLNPAVVVLEIEKLVARLKII 1024

Query: 1025 PGEDPLS---------VEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIES 1084
               D             E   NAT+ F+IL+RSTFASKRVL E+RLT +AF WV GEIES
Sbjct: 1025 ATADTTEDDENFNRAWAEVYFNATMLFSILVRSTFASKRVLTEFRLTEKAFLWVCGEIES 1084

Query: 1085 RFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRI 1144
            +FLQ+L  PGEM+G +AAQSIGEPATQMTLNTFHYAGVS+KNVTLGVPRL+EIIN+AK++
Sbjct: 1085 KFLQALAHPGEMVGALAAQSIGEPATQMTLNTFHYAGVSSKNVTLGVPRLKEIINIAKQV 1144

Query: 1145 KTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVK 1204
            KTPSL++YLKP   +  +RAK V+  LEYTTL +VT ATE++YDPDP +TII ED +FV 
Sbjct: 1145 KTPSLTIYLKPHMARDMDRAKIVKSQLEYTTLANVTSATEIYYDPDPQNTIISEDAEFVN 1204

Query: 1205 SYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNA 1264
            SY+E+PDEEI    +SPWLLRIEL+R M+ DKKL+MA+I + +  +F   L CIF+DDNA
Sbjct: 1205 SYFELPDEEIDVHSMSPWLLRIELDRGMVTDKKLTMADITQCVVRDFGLSLNCIFSDDNA 1264

Query: 1265 EKLILRIRIMNDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKC-GKV 1324
            EKLILRIR++  +  KG   D   +DD FL++IESNML+EM LRGI  I KVF++   K+
Sbjct: 1265 EKLILRIRMVESQETKGTDND---DDDQFLRRIESNMLSEMVLRGIKGIKKVFMRTDDKI 1324

Query: 1325 NKFDENEGFKPEMEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLL 1384
             K  EN GF    EW+LDT+GV+LL VM H DVD  RTTSN ++E+I+VLGIEAVR +LL
Sbjct: 1325 PKVTENGGFGVREEWILDTDGVSLLEVMSHPDVDHTRTTSNDIVEIIQVLGIEAVRNALL 1384

Query: 1385 DELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDIL 1444
             ELR VISFDGSYVNYRHLAIL D MTYRGHLMAITRHGINR +TGP+MRCSFEETV+IL
Sbjct: 1385 KELRAVISFDGSYVNYRHLAILADVMTYRGHLMAITRHGINRVETGPLMRCSFEETVEIL 1444

Query: 1445 LDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLP-----SYIDG 1504
            +DAA+++ETD ++GVTENI+LGQL P+GTG   ++LN +M+KNA  + LP     SY D 
Sbjct: 1445 MDAAMFSETDDVKGVTENIILGQLPPLGTGSFEVFLNQDMIKNAHSIALPEPSNVSYPD- 1504

Query: 1505 LDFGMTPSRSPISG--TPYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPG 1564
                 TPS S   G  TP+H    +P         LSP ++     + G  + S  +SPG
Sbjct: 1505 TPGSQTPSYSYGDGSTTPFHNPYDAP---------LSPFNET----FRGDFSPSAMNSPG 1564

Query: 1565 YSP-----SSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSP 1595
            Y+      SS  Y P SP YSPTSP YSPTSP YSPTSP YSPTSP+YSP+SP YSPTSP
Sbjct: 1565 YNANKSYGSSYQYFPQSPTYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSP 1624

[Close]

BLAST of MELO3C013741 vs. ExPASy Swiss-Prot
Match: P24928 (DNA-directed RNA polymerase II subunit RPB1 OS=Homo sapiens OX=9606 GN=POLR2A PE=1 SV=2)

HSP 1 Score: 1736.9 bits (4497), Expect = 0.0e+00
Identity = 993/1870 (53.10%), Postives = 1259/1870 (67.33%), Query Frame = 0


Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKVAGLSDPRLGTIDRKMK 67
            S   +  ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK+ GL DPR G I+R  +
Sbjct: 11   SACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGR 70

Query: 68   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQAL 127
            C+TC  NM ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+LVD  +PK K  L
Sbjct: 71   CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDIL 130

Query: 128  RIK--NPKNRLRKILDACKNKTKCEGGDEID----VQGQDSDQPV--KKSRGGCGAQQPK 187
                  PK RL  + D CK K  CEGG+E+D    V+  + D+ +  +K  GGCG  QP+
Sbjct: 131  AKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPR 190

Query: 188  ITIEGMKMTAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGILKRITDDDCKLLGLNPK 247
            I   G+++ AE+K     N+D +      E+K  L+ ERV  I KRI+D++C +LG+ P+
Sbjct: 191  IRRSGLELYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPR 250

Query: 248  YARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAH 307
            YARP+WMI+ VLP+PP  VRP+V+M  S+R++DDLTH+LA I++ N  LRR E+NG+ AH
Sbjct: 251  YARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAH 310

Query: 308  IISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 367
            +I+E  +LLQFH+AT  DNELPGLPRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDF
Sbjct: 311  VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF 370

Query: 368  SARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 427
            SARTVITPDP ++ID++GVP SIA N+T+ E VTP+NI+RL+ELV  G    P   GAKY
Sbjct: 371  SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYP---GAKY 430

Query: 428  IIRDDGQRLDLRYLKKSSDHHLELGW-------DNETALVNLQ----------------- 487
            IIRD+G R+DLR+  K SD HL+ G+       D +  + N Q                 
Sbjct: 431  IIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 490

Query: 488  ------------------------------------------------------------ 547
                                                                        
Sbjct: 491  WSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIV 550

Query: 548  -------------DVF------MNILMWWEDFDGKIPAPAILKPQPLWTGKQ-------- 607
                         DVF      MN+LM+   +DGK+P PAILKP+PLWTGKQ        
Sbjct: 551  QDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPG 610

Query: 608  -INLTRTSAWHSESETG----HVTPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHNAF- 667
             IN  RT + H + E      H++PGDT V +E GEL+ G LCKK+LGTS GSL+H ++ 
Sbjct: 611  HINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYL 670

Query: 668  ---------------------------SIGIGDTIADAATMEKINETISAAKNEVKNLIK 727
                                       +IGIGD+IAD+ T + I  TI  AK +V  +I+
Sbjct: 671  EMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIE 730

Query: 728  KAQERSLEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSF 787
            KA    LEP PG T+  +FEN+VN++LN ARD  GSSAQKSLSE NN K+MV +G+KGS 
Sbjct: 731  KAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSK 790

Query: 788  INISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 847
            INISQ+ A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFF
Sbjct: 791  INISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFF 850

Query: 848  HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDA 907
            HAMGGREGLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+  
Sbjct: 851  HAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAG 910

Query: 908  VWIESQKLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQK 967
              +E Q L +LK   K FE+ FR+++ +E      +  + V+D+ +    +N  E E ++
Sbjct: 911  ESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFER 970

Query: 968  LEADRYQLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQ 1027
            +  DR  L   I  TG++   +P NL R+I NAQK F I+ R  SD+HP+++VE + +L 
Sbjct: 971  MREDREVLRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELS 1030

Query: 1028 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFL 1087
            ++L +V G+DPLS +AQ+NATL FNI LRST  S+R+ +E+RL+ EAF+W++GEIES+F 
Sbjct: 1031 KKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFN 1090

Query: 1088 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTP 1147
            Q++  PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++K+ KTP
Sbjct: 1091 QAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTP 1150

Query: 1148 SLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYY 1207
            SL+V+L  ++ +  ERAK + C LE+TTLR VT  T ++YDP+P ST++ ED ++V  YY
Sbjct: 1151 SLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYY 1210

Query: 1208 EMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKL 1267
            EMPD ++A  +ISPWLLR+EL+R+ M D+KL+M  IAEKIN  F DDL CIFNDDNAEKL
Sbjct: 1211 EMPDFDVA--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKL 1270

Query: 1268 ILRIRIMNDEAPKGELTDE---SAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVN 1327
            +LRIRIMN +  K +  +E     +DDVFL+ IESNMLT+M L+GI  I+KV++   + +
Sbjct: 1271 VLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTD 1330

Query: 1328 K-----FDENEGFKPEMEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVR 1387
                    E+  FK   EW+L+T+GV+L+ V+  +DVD  RTTSN ++E+  VLGIEAVR
Sbjct: 1331 NKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVR 1390

Query: 1388 RSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1447
            ++L  EL  VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEET
Sbjct: 1391 KALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEET 1450

Query: 1448 VDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGL 1507
            VD+L++AA + E+D ++GV+ENIMLGQLAP GTG   L L+ E  K  +E  +P+ I GL
Sbjct: 1451 VDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGME--IPTNIPGL 1510

Query: 1508 D--------FGMTPSRSPISG-----TPYHEGMMSPNYLLSPNLRL-------------- 1567
                     FG  P  SP+ G     TP+++G        SP++                
Sbjct: 1511 GAAGPTGMFFGSAP--SPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAA 1570

Query: 1568 -------------------SPISDAQFSPYV----GGM--AFSPTS-------------- 1627
                               SP S    SPY+    G M  ++SPTS              
Sbjct: 1571 SDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQ 1630

Query: 1628 SPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAY 1633
            SP YSP+SP YSP+SP YSPTSP YSPTSP YSPTSP YSPTSP+YSP+SP YSPTSP+Y
Sbjct: 1631 SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1690

[Close]

BLAST of MELO3C013741 vs. ExPASy Swiss-Prot
Match: P11414 (DNA-directed RNA polymerase II subunit RPB1 OS=Cricetulus griseus OX=10029 GN=POLR2A PE=1 SV=2)

HSP 1 Score: 1736.5 bits (4496), Expect = 0.0e+00
Identity = 991/1869 (53.02%), Postives = 1260/1869 (67.42%), Query Frame = 0


Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKVAGLSDPRLGTIDRKMK 67
            S   +  ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK+ GL DPR G I+R  +
Sbjct: 11   SACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGR 70

Query: 68   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQAL 127
            C+TC  NM ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+LVD  +PK K  L
Sbjct: 71   CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDIL 130

Query: 128  RIK--NPKNRLRKILDACKNKTKCEGGDEID----VQGQDSDQPV--KKSRGGCGAQQPK 187
                  PK RL  + D CK K  CEGG+E+D    V+  + D+ +  +K  GGCG  QP+
Sbjct: 131  AKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPR 190

Query: 188  ITIEGMKMTAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGILKRITDDDCKLLGLNPK 247
            I   G+++ AE+K     N+D +      E+K  L+ ERV  I KRI+D++C +LG+ P+
Sbjct: 191  IRRSGLELYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPR 250

Query: 248  YARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAH 307
            YARP+WMI+ VLP+PP  VRP+V+M  S+R++DDLTH+LA I++ N  LRR E+NG+ AH
Sbjct: 251  YARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAH 310

Query: 308  IISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 367
            +I+E  +LLQFH+AT  DNELPGLPRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDF
Sbjct: 311  VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF 370

Query: 368  SARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 427
            SARTVITPDP ++ID++GVP SIA N+T+ E VTP+NI+RL+ELV  G    P   GAKY
Sbjct: 371  SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYP---GAKY 430

Query: 428  IIRDDGQRLDLRYLKKSSDHHLELGW-------DNETALVNLQ----------------- 487
            IIRD+G R+DLR+  K SD HL+ G+       D +  + N Q                 
Sbjct: 431  IIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 490

Query: 488  ------------------------------------------------------------ 547
                                                                        
Sbjct: 491  WSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIV 550

Query: 548  -------------DVF------MNILMWWEDFDGKIPAPAILKPQPLWTGKQ-------- 607
                         DVF      MN+LM+   +DGK+P PAILKP+PLWTGKQ        
Sbjct: 551  QDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPG 610

Query: 608  -INLTRTSAWHSESETG----HVTPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHNAF- 667
             IN  RT + H + E      H++PGDT V +E GEL+ G LCKK+LGTS GSL+H ++ 
Sbjct: 611  HINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYL 670

Query: 668  ---------------------------SIGIGDTIADAATMEKINETISAAKNEVKNLIK 727
                                       +IGIGD+IAD+ T + I  TI  AK +V  +I+
Sbjct: 671  EMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIE 730

Query: 728  KAQERSLEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSF 787
            KA    LEP PG T+  +FEN+VN++LN ARD  GSSAQKSLSE NN K+MV +G+KGS 
Sbjct: 731  KAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSK 790

Query: 788  INISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 847
            INISQ+ A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFF
Sbjct: 791  INISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFF 850

Query: 848  HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDA 907
            HAMGGREGLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+  
Sbjct: 851  HAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAG 910

Query: 908  VWIESQKLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQK 967
              +E Q L +LK   K FE+ FR+++ +E      +  + V+D+ +    +N  E E ++
Sbjct: 911  ESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFER 970

Query: 968  LEADRYQLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQ 1027
            +  DR  L   I  TG++   +P NL R+I NAQK F I+ R  SD+HP+++VE + +L 
Sbjct: 971  MREDREVLRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELS 1030

Query: 1028 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFL 1087
            ++L +V G+DPLS +AQ+NATL FNI LRST  S+R+ +E+RL+ EAF+W++GEIES+F 
Sbjct: 1031 KKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFN 1090

Query: 1088 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTP 1147
            Q++  PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++K+ KTP
Sbjct: 1091 QAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTP 1150

Query: 1148 SLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYY 1207
            SL+V+L  ++ +  ERAK + C LE+TTLR VT  T ++YDP+P ST++ ED ++V  YY
Sbjct: 1151 SLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYY 1210

Query: 1208 EMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKL 1267
            EMPD ++A  +ISPWLLR+EL+R+ M D+KL+M  IAEKIN  F DDL CIFNDDNAEKL
Sbjct: 1211 EMPDFDVA--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKL 1270

Query: 1268 ILRIRIMNDEAPKGELTDE---SAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVN 1327
            +LRIRIMN +  K +  +E     +DDVFL+ IESNMLT+M L+GI  I+KV++   + +
Sbjct: 1271 VLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTD 1330

Query: 1328 K-----FDENEGFKPEMEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVR 1387
                    E+  FK   EW+L+T+GV+L+ V+  +DVD  RTTSN ++E+  VLGIEAVR
Sbjct: 1331 NKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVR 1390

Query: 1388 RSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1447
            ++L  EL  VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEET
Sbjct: 1391 KALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEET 1450

Query: 1448 VDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGL 1507
            VD+L++AA + E+D ++GV+ENIMLGQLAP GTG   L L+ E  K  +E  +P+ I GL
Sbjct: 1451 VDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGME--IPTNIPGL 1510

Query: 1508 D--------FGMTPSRSPISG-----TPYHEGMMSPNYLLSPNLRL-------------- 1567
                     FG  P  SP+ G     TP+++G        SP++                
Sbjct: 1511 GAAGPTGMFFGSAP--SPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAA 1570

Query: 1568 -------------------SPISDAQFSPYV----GGM--AFSPTS-------------- 1627
                               SP S    SPY+    G M  ++SPTS              
Sbjct: 1571 SDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQ 1630

Query: 1628 SPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAY 1639
            SP YSP+SP YSP+SP YSPTSP YSPTSP YSPTSP YSPTSP+YSP+SP YSPTSP+Y
Sbjct: 1631 SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1690

[Close]

BLAST of MELO3C013741 vs. ExPASy Swiss-Prot
Match: P08775 (DNA-directed RNA polymerase II subunit RPB1 OS=Mus musculus OX=10090 GN=Polr2a PE=1 SV=3)

HSP 1 Score: 1736.5 bits (4496), Expect = 0.0e+00
Identity = 991/1869 (53.02%), Postives = 1260/1869 (67.42%), Query Frame = 0


Query: 8    SPAEVAKVRMVQFGILSPDEIRQMSVVQ--IEHGETTERGKPKVAGLSDPRLGTIDRKMK 67
            S   +  ++ VQFG+LSPDE+++MSV +  I++ ETTE G+PK+ GL DPR G I+R  +
Sbjct: 11   SACPLRTIKRVQFGVLSPDELKRMSVTEGGIKYPETTEGGRPKLGGLMDPRQGVIERTGR 70

Query: 68   CETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQAL 127
            C+TC  NM ECPGHFGH+ELAKP+FH+GF+   + ++R VCF CSK+LVD  +PK K  L
Sbjct: 71   CQTCAGNMTECPGHFGHIELAKPVFHVGFLVKTMKVLRCVCFFCSKLLVDSNNPKIKDIL 130

Query: 128  RIK--NPKNRLRKILDACKNKTKCEGGDEID----VQGQDSDQPV--KKSRGGCGAQQPK 187
                  PK RL  + D CK K  CEGG+E+D    V+  + D+ +  +K  GGCG  QP+
Sbjct: 131  AKSKGQPKKRLTHVYDLCKGKNICEGGEEMDNKFGVEQPEGDEDLTKEKGHGGCGRYQPR 190

Query: 188  ITIEGMKMTAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGILKRITDDDCKLLGLNPK 247
            I   G+++ AE+K     N+D +      E+K  L+ ERV  I KRI+D++C +LG+ P+
Sbjct: 191  IRRSGLELYAEWK---HVNEDSQ------EKKILLSPERVHEIFKRISDEECFVLGMEPR 250

Query: 248  YARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAH 307
            YARP+WMI+ VLP+PP  VRP+V+M  S+R++DDLTH+LA I++ N  LRR E+NG+ AH
Sbjct: 251  YARPEWMIVTVLPVPPLSVRPAVVMQGSARNQDDLTHKLADIVKINNQLRRNEQNGAAAH 310

Query: 308  IISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDF 367
            +I+E  +LLQFH+AT  DNELPGLPRA Q+SGRP+KS+  RLK KEGR+RGNLMGKRVDF
Sbjct: 311  VIAEDVKLLQFHVATMVDNELPGLPRAMQKSGRPLKSLKQRLKGKEGRVRGNLMGKRVDF 370

Query: 368  SARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY 427
            SARTVITPDP ++ID++GVP SIA N+T+ E VTP+NI+RL+ELV  G    P   GAKY
Sbjct: 371  SARTVITPDPNLSIDQVGVPRSIAANMTFAEIVTPFNIDRLQELVRRGNSQYP---GAKY 430

Query: 428  IIRDDGQRLDLRYLKKSSDHHLELGW-------DNETALVNLQ----------------- 487
            IIRD+G R+DLR+  K SD HL+ G+       D +  + N Q                 
Sbjct: 431  IIRDNGDRIDLRFHPKPSDLHLQTGYKVERHMCDGDIVIFNRQPTLHKMSMMGHRVRILP 490

Query: 488  ------------------------------------------------------------ 547
                                                                        
Sbjct: 491  WSTFRLNLSVTTPYNADFDGDEMNLHLPQSLETRAEIQELAMVPRMIVTPQSNRPVMGIV 550

Query: 548  -------------DVF------MNILMWWEDFDGKIPAPAILKPQPLWTGKQ-------- 607
                         DVF      MN+LM+   +DGK+P PAILKP+PLWTGKQ        
Sbjct: 551  QDTLTAVRKFTKRDVFLERGEVMNLLMFLSTWDGKVPQPAILKPRPLWTGKQIFSLIIPG 610

Query: 608  -INLTRTSAWHSESETG----HVTPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHNAF- 667
             IN  RT + H + E      H++PGDT V +E GEL+ G LCKK+LGTS GSL+H ++ 
Sbjct: 611  HINCIRTHSTHPDDEDSGPYKHISPGDTKVVVENGELIMGILCKKSLGTSAGSLVHISYL 670

Query: 668  ---------------------------SIGIGDTIADAATMEKINETISAAKNEVKNLIK 727
                                       +IGIGD+IAD+ T + I  TI  AK +V  +I+
Sbjct: 671  EMGHDITRLFYSNIQTVINNWLLIEGHTIGIGDSIADSKTYQDIQNTIKKAKQDVIEVIE 730

Query: 728  KAQERSLEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSF 787
            KA    LEP PG T+  +FEN+VN++LN ARD  GSSAQKSLSE NN K+MV +G+KGS 
Sbjct: 731  KAHNNELEPTPGNTLRQTFENQVNRILNDARDKTGSSAQKSLSEYNNFKSMVVSGAKGSK 790

Query: 788  INISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFF 847
            INISQ+ A VGQQNVEGKRIPFGF  RTLPHF KDDYGPESRGFVENSYL GLTP EFFF
Sbjct: 791  INISQVIAVVGQQNVEGKRIPFGFKHRTLPHFIKDDYGPESRGFVENSYLAGLTPTEFFF 850

Query: 848  HAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDA 907
            HAMGGREGLIDTAVKT+ETGYIQRRL+K+ME +MVKYD TVRNS+  V+Q  YGEDG+  
Sbjct: 851  HAMGGREGLIDTAVKTAETGYIQRRLIKSMESVMVKYDATVRNSINQVVQLRYGEDGLAG 910

Query: 908  VWIESQKLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQK 967
              +E Q L +LK   K FE+ FR+++ +E      +  + V+D+ +    +N  E E ++
Sbjct: 911  ESVEFQNLATLKPSNKAFEKKFRFDYTNERALRRTLQEDLVKDVLSNAHIQNELEREFER 970

Query: 968  LEADRYQLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQ 1027
            +  DR  L   I  TG++   +P NL R+I NAQK F I+ R  SD+HP+++VE + +L 
Sbjct: 971  MREDREVLRV-IFPTGDSKVVLPCNLLRMIWNAQKIFHINPRLPSDLHPIKVVEGVKELS 1030

Query: 1028 ERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFL 1087
            ++L +V G+DPLS +AQ+NATL FNI LRST  S+R+ +E+RL+ EAF+W++GEIES+F 
Sbjct: 1031 KKLVIVNGDDPLSRQAQENATLLFNIHLRSTLCSRRMAEEFRLSGEAFDWLLGEIESKFN 1090

Query: 1088 QSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTP 1147
            Q++  PGEM+G +AAQS+GEPATQMTLNTFHYAGVSAKNVTLGVPRL+E+IN++K+ KTP
Sbjct: 1091 QAIAHPGEMVGALAAQSLGEPATQMTLNTFHYAGVSAKNVTLGVPRLKELINISKKPKTP 1150

Query: 1148 SLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYY 1207
            SL+V+L  ++ +  ERAK + C LE+TTLR VT  T ++YDP+P ST++ ED ++V  YY
Sbjct: 1151 SLTVFLLGQSARDAERAKDILCRLEHTTLRKVTANTAIYYDPNPQSTVVAEDQEWVNVYY 1210

Query: 1208 EMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKL 1267
            EMPD ++A  +ISPWLLR+EL+R+ M D+KL+M  IAEKIN  F DDL CIFNDDNAEKL
Sbjct: 1211 EMPDFDVA--RISPWLLRVELDRKHMTDRKLTMEQIAEKINAGFGDDLNCIFNDDNAEKL 1270

Query: 1268 ILRIRIMNDEAPKGELTDE---SAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVN 1327
            +LRIRIMN +  K +  +E     +DDVFL+ IESNMLT+M L+GI  I+KV++   + +
Sbjct: 1271 VLRIRIMNSDENKMQEEEEVVDKMDDDVFLRCIESNMLTDMTLQGIEQISKVYMHLPQTD 1330

Query: 1328 K-----FDENEGFKPEMEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVR 1387
                    E+  FK   EW+L+T+GV+L+ V+  +DVD  RTTSN ++E+  VLGIEAVR
Sbjct: 1331 NKKKIIITEDGEFKALQEWILETDGVSLMRVLSEKDVDPVRTTSNDIVEIFTVLGIEAVR 1390

Query: 1388 RSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEET 1447
            ++L  EL  VISFDGSYVNYRHLA+LCDTMT RGHLMAITRHG+NR DTGP+M+CSFEET
Sbjct: 1391 KALERELYHVISFDGSYVNYRHLALLCDTMTCRGHLMAITRHGVNRQDTGPLMKCSFEET 1450

Query: 1448 VDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGL 1507
            VD+L++AA + E+D ++GV+ENIMLGQLAP GTG   L L+ E  K  +E  +P+ I GL
Sbjct: 1451 VDVLMEAAAHGESDPMKGVSENIMLGQLAPAGTGCFDLLLDAEKCKYGME--IPTNIPGL 1510

Query: 1508 D--------FGMTPSRSPISG-----TPYHEGMMSPNYLLSPNLRL-------------- 1567
                     FG  P  SP+ G     TP+++G        SP++                
Sbjct: 1511 GAAGPTGMFFGSAP--SPMGGISPAMTPWNQGATPAYGAWSPSVGSGMTPGAAGFSPSAA 1570

Query: 1568 -------------------SPISDAQFSPYV----GGM--AFSPTS-------------- 1627
                               SP S    SPY+    G M  ++SPTS              
Sbjct: 1571 SDASGFSPGYSPAWSPTPGSPGSPGPSSPYIPSPGGAMSPSYSPTSPAYEPRSPGGYTPQ 1630

Query: 1628 SPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAY 1639
            SP YSP+SP YSP+SP YSPTSP YSPTSP YSPTSP YSPTSP+YSP+SP YSPTSP+Y
Sbjct: 1631 SPSYSPTSPSYSPTSPSYSPTSPNYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1690

[Close]

BLAST of MELO3C013741 vs. ExPASy TrEMBL
Match: A0A1S3BJ90 (DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103490666 PE=3 SV=1)

HSP 1 Score: 3102.4 bits (8042), Expect = 0.0e+00
Identity = 1637/1838 (89.06%), Postives = 1639/1838 (89.17%), Query Frame = 0


Query: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
            MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120

Query: 121  FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKITI 180
            FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKITI
Sbjct: 121  FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKITI 180

Query: 181  EGMKMTAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGILKRITDDDCKLLGLNPKYAR 240
            EGMKMTAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGILKRITDDDCKLLGLNPKYAR
Sbjct: 181  EGMKMTAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGILKRITDDDCKLLGLNPKYAR 240

Query: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
            PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300

Query: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
            EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
            TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 421  DDGQRLDLRYLKKSSDHHLELGW-------DNETALVNLQ-------------------- 480
            DDGQRLDLRYLKKSSDHHLELG+       D +  L N Q                    
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 481  ------------------------------------------------------------ 540
                                                                        
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 541  ----------------DVFMNILMWWEDFDGKIPAPAILKPQPLWTG---------KQIN 600
                            DVFMNILMWWEDFDGKIPAPAILKPQPLWTG         KQIN
Sbjct: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600

Query: 601  LTRTSAWHSESETGHVTPGDTFVRIEKGELLSGTLCKKALGTSTGSLIH----------- 660
            LTRTSAWHSESETGHVTPGDTFVRIEKGELLSGTLCKKALGTSTGSLIH           
Sbjct: 601  LTRTSAWHSESETGHVTPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660

Query: 661  -----------------NAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
                             NAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720

Query: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
            EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
            ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900

Query: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960
            LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ
Sbjct: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960

Query: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
            LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP
Sbjct: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020

Query: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
            GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140

Query: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200
            PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200

Query: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
            APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320
            NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320

Query: 1321 EMEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
            EMEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440

Query: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500
            LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500

Query: 1501 YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560
            YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
Sbjct: 1501 YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560

Query: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620
            SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
Sbjct: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620

Query: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1645
            SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1680

[Close]

BLAST of MELO3C013741 vs. ExPASy TrEMBL
Match: A0A5D3CJC8 (DNA-directed RNA polymerase subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold139G00440 PE=3 SV=1)

HSP 1 Score: 3078.5 bits (7980), Expect = 0.0e+00
Identity = 1637/1889 (86.66%), Postives = 1639/1889 (86.77%), Query Frame = 0


Query: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEI-------------------------------- 60
            MDLRFPYSPAEVAKVRMVQFGILSPDEI                                
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIVILLPTPPQFSFILSDSVLILRGCSWVKNALH 60

Query: 61   ---RQMSVVQIEHGETTERGKPKVAGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLEL 120
               RQMSVVQIEHGETTERGKPKVAGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLEL
Sbjct: 61   LYERQMSVVQIEHGETTERGKPKVAGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLEL 120

Query: 121  AKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQALRIKNPKNRLRKILDACKNKT 180
            AKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQALRIKNPKNRLRKILDACKNKT
Sbjct: 121  AKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQALRIKNPKNRLRKILDACKNKT 180

Query: 181  KCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKITIEGMKMTAEYKAQRKKNDDQEQLPEP 240
            KCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKITIEGMKMTAEYKAQRKKNDDQEQLPEP
Sbjct: 181  KCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKITIEGMKMTAEYKAQRKKNDDQEQLPEP 240

Query: 241  VERKQTLTAERVLGILKRITDDDCKLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTS 300
            VERKQTLTAERVLGILKRITDDDCKLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTS
Sbjct: 241  VERKQTLTAERVLGILKRITDDDCKLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTS 300

Query: 301  SRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRAT 360
            SRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRAT
Sbjct: 301  SRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRAT 360

Query: 361  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLT 420
            QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLT
Sbjct: 361  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLT 420

Query: 421  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGW-- 480
            YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELG+  
Sbjct: 421  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKV 480

Query: 481  -----DNETALVNLQ--------------------------------------------- 540
                 D +  L N Q                                             
Sbjct: 481  ERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMNMHVP 540

Query: 541  ---------------------------------------------------DVFMNILMW 600
                                                               DVFMNILMW
Sbjct: 541  QSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMNILMW 600

Query: 601  WEDFDGKIPAPAILKPQPLWTG---------KQINLTRTSAWHSESETGHVTPGDTFVRI 660
            WEDFDGKIPAPAILKPQPLWTG         KQINLTRTSAWHSESETGHVTPGDTFVRI
Sbjct: 601  WEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQINLTRTSAWHSESETGHVTPGDTFVRI 660

Query: 661  EKGELLSGTLCKKALGTSTGSLIH----------------------------NAFSIGIG 720
            EKGELLSGTLCKKALGTSTGSLIH                            NAFSIGIG
Sbjct: 661  EKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFSIGIG 720

Query: 721  DTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARD 780
            DTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARD
Sbjct: 721  DTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARD 780

Query: 781  DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHF 840
            DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHF
Sbjct: 781  DAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHF 840

Query: 841  TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 900
            TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED
Sbjct: 841  TKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMED 900

Query: 901  IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFEDENWK 960
            IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFEDENWK
Sbjct: 901  IMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFEDENWK 960

Query: 961  PNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIQN 1020
            PNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIQN
Sbjct: 961  PNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIQN 1020

Query: 1021 AQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTF 1080
            AQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTF
Sbjct: 1021 AQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTF 1080

Query: 1081 ASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1140
            ASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY
Sbjct: 1081 ASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHY 1140

Query: 1141 AGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSV 1200
            AGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSV
Sbjct: 1141 AGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSV 1200

Query: 1201 TQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLS 1260
            TQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLS
Sbjct: 1201 TQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLS 1260

Query: 1261 MANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESAEDDVFLKKIES 1320
            MANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESAEDDVFLKKIES
Sbjct: 1261 MANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESAEDDVFLKKIES 1320

Query: 1321 NMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVMCHEDVDAR 1380
            NMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVMCHEDVDAR
Sbjct: 1321 NMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVMCHEDVDAR 1380

Query: 1381 RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 1440
            RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT
Sbjct: 1381 RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHLMAIT 1440

Query: 1441 RHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYL 1500
            RHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYL
Sbjct: 1441 RHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGCALYL 1500

Query: 1501 NDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSPISDAQ 1560
            NDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSPISDAQ
Sbjct: 1501 NDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSPISDAQ 1560

Query: 1561 FSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTY 1620
            FSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTY
Sbjct: 1561 FSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTY 1620

Query: 1621 SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1645
            SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS
Sbjct: 1621 SPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTS 1680

[Close]

BLAST of MELO3C013741 vs. ExPASy TrEMBL
Match: A0A0A0L655 (DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_3G002510 PE=3 SV=1)

HSP 1 Score: 3077.7 bits (7978), Expect = 0.0e+00
Identity = 1630/1867 (87.31%), Postives = 1635/1867 (87.57%), Query Frame = 0


Query: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
            MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120

Query: 121  FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKITI 180
            FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKI+I
Sbjct: 121  FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKISI 180

Query: 181  EGMKMTAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGILKRITDDDCKLLGLNPKYAR 240
            EGMKMTAEYKAQRKKNDD EQLPEPVERKQTLTAERVLGILKRITD+DCKLLGLNPKYAR
Sbjct: 181  EGMKMTAEYKAQRKKNDDPEQLPEPVERKQTLTAERVLGILKRITDEDCKLLGLNPKYAR 240

Query: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
            PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300

Query: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
            EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
            TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 421  DDGQRLDLRYLKKSSDHHLELGW-------DNETALVNLQ-------------------- 480
            DDGQRLDLRYLKKSSDHHLELG+       D +  L N Q                    
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 481  ------------------------------------------------------------ 540
                                                                        
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 541  ----------------DVFMNILMWWEDFDGKIPAPAILKPQPLWTG---------KQIN 600
                            DVFMN LMWWEDFDGKIPAPAILKPQPLWTG         KQIN
Sbjct: 541  LLGCRKITKRDTFITKDVFMNTLMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600

Query: 601  LTRTSAWHSESETGHVTPGDTFVRIEKGELLSGTLCKKALGTSTGSLIH----------- 660
            LTRTSAWHSESETGH+TPGDTFVRIEKGELLSGTLCKKALGTSTGSLIH           
Sbjct: 601  LTRTSAWHSESETGHITPGDTFVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAA 660

Query: 661  -----------------NAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
                             NAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720

Query: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
            EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
            ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900

Query: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960
            LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ
Sbjct: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960

Query: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
            LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP
Sbjct: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020

Query: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
            GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140

Query: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200
            PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200

Query: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
            APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320
            NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320

Query: 1321 EMEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
            EMEWMLDTEGVNLLAVM HEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVMTHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440

Query: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500
            LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500

Query: 1501 YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560
            YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
Sbjct: 1501 YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560

Query: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620
            SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
Sbjct: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620

Query: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1644
            SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1680

[Close]

BLAST of MELO3C013741 vs. ExPASy TrEMBL
Match: A0A5A7UGR7 (DNA-directed RNA polymerase subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold344G00420 PE=3 SV=1)

HSP 1 Score: 3077.0 bits (7976), Expect = 0.0e+00
Identity = 1637/1893 (86.48%), Postives = 1639/1893 (86.58%), Query Frame = 0


Query: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEI-------------------------------- 60
            MDLRFPYSPAEVAKVRMVQFGILSPDEI                                
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIVILLPTPPQFSFILSDSVLILRGCSWVKNALH 60

Query: 61   ---RQMSVVQIEHGETTERGKPKVAGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLEL 120
               RQMSVVQIEHGETTERGKPKVAGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLEL
Sbjct: 61   LYERQMSVVQIEHGETTERGKPKVAGLSDPRLGTIDRKMKCETCTANMAECPGHFGHLEL 120

Query: 121  AKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQALRIKNPKNRLRKILDACKNKT 180
            AKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQALRIKNPKNRLRKILDACKNKT
Sbjct: 121  AKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQALRIKNPKNRLRKILDACKNKT 180

Query: 181  KCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKITIEGMKMTAEYKAQRKKNDDQEQLPEP 240
            KCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKITIEGMKMTAEYKAQRKKNDDQEQLPEP
Sbjct: 181  KCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKITIEGMKMTAEYKAQRKKNDDQEQLPEP 240

Query: 241  VERKQTLTAERVLGILKRITDDDCKLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTS 300
            VERKQTLTAERVLGILKRITDDDCKLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTS
Sbjct: 241  VERKQTLTAERVLGILKRITDDDCKLLGLNPKYARPDWMILQVLPIPPPPVRPSVMMDTS 300

Query: 301  SRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRAT 360
            SRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRAT
Sbjct: 301  SRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRAT 360

Query: 361  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLT 420
            QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLT
Sbjct: 361  QRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLT 420

Query: 421  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGW-- 480
            YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELG+  
Sbjct: 421  YPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIRDDGQRLDLRYLKKSSDHHLELGYKA 480

Query: 481  ---------DNETALVNLQ----------------------------------------- 540
                     D +  L N Q                                         
Sbjct: 481  RFSVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYSTFRLNLSVTSPYNADFDGDEMN 540

Query: 541  -------------------------------------------------------DVFMN 600
                                                                   DVFMN
Sbjct: 541  MHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDTLLGCRKITKRDTFITKDVFMN 600

Query: 601  ILMWWEDFDGKIPAPAILKPQPLWTG---------KQINLTRTSAWHSESETGHVTPGDT 660
            ILMWWEDFDGKIPAPAILKPQPLWTG         KQINLTRTSAWHSESETGHVTPGDT
Sbjct: 601  ILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQINLTRTSAWHSESETGHVTPGDT 660

Query: 661  FVRIEKGELLSGTLCKKALGTSTGSLIH----------------------------NAFS 720
            FVRIEKGELLSGTLCKKALGTSTGSLIH                            NAFS
Sbjct: 661  FVRIEKGELLSGTLCKKALGTSTGSLIHVIWEEVGPDAARKFLGHTQWLVNYWLLQNAFS 720

Query: 721  IGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLN 780
            IGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLN
Sbjct: 721  IGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLN 780

Query: 781  KARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRT 840
            KARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRT
Sbjct: 781  KARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRT 840

Query: 841  LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK 900
            LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK
Sbjct: 841  LPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVK 900

Query: 901  AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFED 960
            AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFED
Sbjct: 901  AMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFED 960

Query: 961  ENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKR 1020
            ENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKR
Sbjct: 961  ENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKR 1020

Query: 1021 LIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILL 1080
            LIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILL
Sbjct: 1021 LIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILL 1080

Query: 1081 RSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLN 1140
            RSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLN
Sbjct: 1081 RSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLN 1140

Query: 1141 TFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTT 1200
            TFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTT
Sbjct: 1141 TFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTT 1200

Query: 1201 LRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVD 1260
            LRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVD
Sbjct: 1201 LRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLLRIELNREMMVD 1260

Query: 1261 KKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESAEDDVFLK 1320
            KKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESAEDDVFLK
Sbjct: 1261 KKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESAEDDVFLK 1320

Query: 1321 KIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVMCHED 1380
            KIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVMCHED
Sbjct: 1321 KIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKPEMEWMLDTEGVNLLAVMCHED 1380

Query: 1381 VDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHL 1440
            VDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHL
Sbjct: 1381 VDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDGSYVNYRHLAILCDTMTYRGHL 1440

Query: 1441 MAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGC 1500
            MAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGC
Sbjct: 1441 MAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDHLRGVTENIMLGQLAPIGTGGC 1500

Query: 1501 ALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSPI 1560
            ALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSPI
Sbjct: 1501 ALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTPYHEGMMSPNYLLSPNLRLSPI 1560

Query: 1561 SDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPT 1620
            SDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPT
Sbjct: 1561 SDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPTSPGYSPTSPGYSPTSPGYSPT 1620

Query: 1621 SPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1645
            SPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY
Sbjct: 1621 SPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSY 1680

[Close]

BLAST of MELO3C013741 vs. ExPASy TrEMBL
Match: A0A6J1CV04 (DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC111014830 PE=3 SV=1)

HSP 1 Score: 3051.2 bits (7909), Expect = 0.0e+00
Identity = 1608/1854 (86.73%), Postives = 1633/1854 (88.08%), Query Frame = 0


Query: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
            MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI
Sbjct: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
            DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK
Sbjct: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120

Query: 121  FKQALRIKNPKNRLRKILDACKNKTKCEGGDEIDVQGQDSDQPVKKSRGGCGAQQPKITI 180
            FKQALRIKNPKNRL+KILDACKNKTKCEGGDEIDVQGQ+S+QPVKK RGGCGAQQPKI+I
Sbjct: 121  FKQALRIKNPKNRLKKILDACKNKTKCEGGDEIDVQGQESEQPVKKGRGGCGAQQPKISI 180

Query: 181  EGMKMTAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGILKRITDDDCKLLGLNPKYAR 240
            +GMKM AEYKAQRKKNDDQEQLPEPVERKQTL+AERVLG+LKRI+D+DCKLLGLNPKYAR
Sbjct: 181  DGMKMVAEYKAQRKKNDDQEQLPEPVERKQTLSAERVLGVLKRISDEDCKLLGLNPKYAR 240

Query: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300
            PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS
Sbjct: 241  PDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHIIS 300

Query: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360
            EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR
Sbjct: 301  EFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSAR 360

Query: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420
            TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR
Sbjct: 361  TVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYIIR 420

Query: 421  DDGQRLDLRYLKKSSDHHLELGW-------DNETALVNLQ-------------------- 480
            DDGQRLDLRYLKKSSDHHLELG+       D +  L N Q                    
Sbjct: 421  DDGQRLDLRYLKKSSDHHLELGYKVERHLNDGDFVLFNRQPSLHKMSIMGHRIKIMPYST 480

Query: 481  ------------------------------------------------------------ 540
                                                                        
Sbjct: 481  FRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQSNRPVMGIVQDT 540

Query: 541  ----------------DVFMNILMWWEDFDGKIPAPAILKPQPLWTG---------KQIN 600
                            DVFMNILMWWEDFDGKIPAPAILKPQPLWTG         KQIN
Sbjct: 541  LLGCRKITKRDTFITKDVFMNILMWWEDFDGKIPAPAILKPQPLWTGKQVFNLIIPKQIN 600

Query: 601  LTRTSAWHSESETGHVTPGDTFVRIEKGELLSGTLCKKALGTSTGSLIH----------- 660
            LTRTSAWH+ESETG +TPGDTFVRIEKGEL+SGTLCKKALGTSTGSLIH           
Sbjct: 601  LTRTSAWHAESETGFITPGDTFVRIEKGELISGTLCKKALGTSTGSLIHVIWEEVGPDAA 660

Query: 661  -----------------NAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERSL 720
                             NAFSIGIGDTIADAATMEKINETIS AKNEVKNLIKKAQERSL
Sbjct: 661  RKFLGHTQWLVNYWLLQNAFSIGIGDTIADAATMEKINETISLAKNEVKNLIKKAQERSL 720

Query: 721  EPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780
            EPEPGRTMM+SFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT
Sbjct: 721  EPEPGRTMMESFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMT 780

Query: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840
            ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE
Sbjct: 781  ACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGRE 840

Query: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900
            GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK
Sbjct: 841  GLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQK 900

Query: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQ 960
            LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADR+Q
Sbjct: 901  LDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRFQ 960

Query: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020
            LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP
Sbjct: 961  LGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVP 1020

Query: 1021 GEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080
            GEDPLSVEAQKNATL FNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG
Sbjct: 1021 GEDPLSVEAQKNATLLFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPG 1080

Query: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140
            EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK
Sbjct: 1081 EMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYLK 1140

Query: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200
            PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI
Sbjct: 1141 PEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEEI 1200

Query: 1201 APEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260
            +P+KISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM
Sbjct: 1201 SPDKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIM 1260

Query: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFKP 1320
            NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDE EGFKP
Sbjct: 1261 NDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDEYEGFKP 1320

Query: 1321 EMEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380
            EMEWMLDTEGVNLLAV+CHEDVDA+RTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG
Sbjct: 1321 EMEWMLDTEGVNLLAVICHEDVDAKRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFDG 1380

Query: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440
            SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH
Sbjct: 1381 SYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETDH 1440

Query: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500
            LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP
Sbjct: 1441 LRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGTP 1500

Query: 1501 YHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560
            YHEGMMSP+YLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT
Sbjct: 1501 YHEGMMSPSYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSPT 1560

Query: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620
            SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY
Sbjct: 1561 SPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSY 1620

Query: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1645
            SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS
Sbjct: 1621 SPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTS 1680

[Close]

BLAST of MELO3C013741 vs. TAIR 10
Match: AT4G35800.1 (RNA polymerase II large subunit )

HSP 1 Score: 2721.0 bits (7052), Expect = 0.0e+00
Identity = 1425/1830 (77.87%), Postives = 1541/1830 (84.21%), Query Frame = 0


Query: 1    MDLRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTERGKPKVAGLSDPRLGTI 60
            MD RFP+SPAEV+KVR+VQFGILSPDEIRQMSV+ +EH ETTE+GKPKV GLSD RLGTI
Sbjct: 1    MDTRFPFSPAEVSKVRVVQFGILSPDEIRQMSVIHVEHSETTEKGKPKVGGLSDTRLGTI 60

Query: 61   DRKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK 120
            DRK+KCETC ANMAECPGHFG+LELAKPM+H+GFMKTVL+IMR VCFNCSKIL DEE+ K
Sbjct: 61   DRKVKCETCMANMAECPGHFGYLELAKPMYHVGFMKTVLSIMRCVCFNCSKILADEEEHK 120

Query: 121  FKQALRIKNPKNRLRKILDACKNKTKCEGGDEI-DVQGQDSDQPVKKSRGGCGAQQPKIT 180
            FKQA++IKNPKNRL+KILDACKNKTKC+GGD+I DVQ   +D+PVKKSRGGCGAQQPK+T
Sbjct: 121  FKQAMKIKNPKNRLKKILDACKNKTKCDGGDDIDDVQSHSTDEPVKKSRGGCGAQQPKLT 180

Query: 181  IEGMKMTAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGILKRITDDDCKLLGLNPKYA 240
            IEGMKM AEYK QRKKND+ +QLPEP ERKQTL A+RVL +LKRI+D DC+LLG NPK+A
Sbjct: 181  IEGMKMIAEYKIQRKKNDEPDQLPEPAERKQTLGADRVLSVLKRISDADCQLLGFNPKFA 240

Query: 241  RPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRRQERNGSPAHII 300
            RPDWMIL+VLPIPPPPVRPSVMMD +SRSEDDLTHQLAMIIRHNENL+RQE+NG+PAHII
Sbjct: 241  RPDWMILEVLPIPPPPVRPSVMMDATSRSEDDLTHQLAMIIRHNENLKRQEKNGAPAHII 300

Query: 301  SEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 360
            SEF QLLQFHIATYFDNELPG PRATQ+SGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA
Sbjct: 301  SEFTQLLQFHIATYFDNELPGQPRATQKSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSA 360

Query: 361  RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKYII 420
            RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELV+YGPHPPPGKTGAKYII
Sbjct: 361  RTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVDYGPHPPPGKTGAKYII 420

Query: 421  RDDGQRLDLRYLKKSSDHHLELGW-------DNETALVNLQ------------------- 480
            RDDGQRLDLRYLKKSSD HLELG+       D +  L N Q                   
Sbjct: 421  RDDGQRLDLRYLKKSSDQHLELGYKVERHLQDGDFVLFNRQPSLHKMSIMGHRIRIMPYS 480

Query: 481  ------------------------------------------------------------ 540
                                                                        
Sbjct: 481  TFRLNLSVTSPYNADFDGDEMNMHVPQSFETRAEVLELMMVPKCIVSPQANRPVMGIVQD 540

Query: 541  -----------------DVFMNILMWWEDFDGKIPAPAILKPQPLWTG---------KQI 600
                             DVFMN LMWWEDFDGK+PAPAILKP+PLWTG         KQI
Sbjct: 541  TLLGCRKITKRDTFIEKDVFMNTLMWWEDFDGKVPAPAILKPRPLWTGKQVFNLIIPKQI 600

Query: 601  NLTRTSAWHSESETGHVTPGDTFVRIEKGELLSGTLCKKALGTSTGSLIH---------- 660
            NL R SAWH+++ETG +TPGDT VRIE+GELL+GTLCKK LGTS GSL+H          
Sbjct: 601  NLLRYSAWHADTETGFITPGDTQVRIERGELLAGTLCKKTLGTSNGSLVHVIWEEVGPDA 660

Query: 661  ------------------NAFSIGIGDTIADAATMEKINETISAAKNEVKNLIKKAQERS 720
                              N F+IGIGDTIAD++TMEKINETIS AK  VK+LI++ Q + 
Sbjct: 661  ARKFLGHTQWLVNYWLLQNGFTIGIGDTIADSSTMEKINETISNAKTAVKDLIRQFQGKE 720

Query: 721  LEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQM 780
            L+PEPGRTM D+FEN+VNQVLNKARDDAGSSAQKSL+E+NNLKAMVTAGSKGSFINISQM
Sbjct: 721  LDPEPGRTMRDTFENRVNQVLNKARDDAGSSAQKSLAETNNLKAMVTAGSKGSFINISQM 780

Query: 781  TACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 840
            TACVGQQNVEGKRIPFGF  RTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR
Sbjct: 781  TACVGQQNVEGKRIPFGFDGRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGR 840

Query: 841  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 900
            EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ
Sbjct: 841  EGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQ 900

Query: 901  KLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRY 960
            KLDSLKMKK EF+R F+YE +DENW P Y+  EH+EDLK IRE R+VF+AE  KLE DR+
Sbjct: 901  KLDSLKMKKSEFDRTFKYEIDDENWNPTYLSDEHLEDLKGIRELRDVFDAEYSKLETDRF 960

Query: 961  QLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVV 1020
            QLGTEIAT G+++WP+PVN+KR I NAQKTFKID R+ SDMHP+EIV+A+DKLQERL VV
Sbjct: 961  QLGTEIATNGDSTWPLPVNIKRHIWNAQKTFKIDLRKISDMHPVEIVDAVDKLQERLLVV 1020

Query: 1021 PGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAP 1080
            PG+D LSVEAQKNATLFFNILLRST ASKRVL+EY+L+REAFEWVIGEIESRFLQSLVAP
Sbjct: 1021 PGDDALSVEAQKNATLFFNILLRSTLASKRVLEEYKLSREAFEWVIGEIESRFLQSLVAP 1080

Query: 1081 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL 1140
            GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL
Sbjct: 1081 GEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVAKRIKTPSLSVYL 1140

Query: 1141 KPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDIDFVKSYYEMPDEE 1200
             PEA+K+KE AKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEED +FV+SYYEMPDE+
Sbjct: 1141 TPEASKSKEGAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDFEFVRSYYEMPDED 1200

Query: 1201 IAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRI 1260
            ++P+KISPWLLRIELNREMMVDKKLSMA+IAEKINLEFDDDLTCIFNDDNA+KLILRIRI
Sbjct: 1201 VSPDKISPWLLRIELNREMMVDKKLSMADIAEKINLEFDDDLTCIFNDDNAQKLILRIRI 1260

Query: 1261 MNDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCGKVNKFDENEGFK 1320
            MNDE PKGEL DESAEDDVFLKKIESNMLTEMALRGIPDINKVFIK  + ++FDE  GFK
Sbjct: 1261 MNDEGPKGELQDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKQVRKSRFDEEGGFK 1320

Query: 1321 PEMEWMLDTEGVNLLAVMCHEDVDARRTTSNHLIEVIEVLGIEAVRRSLLDELRVVISFD 1380
               EWMLDTEGVNLLAVMCHEDVD +RTTSNHLIE+IEVLGIEAVRR+LLDELRVVISFD
Sbjct: 1321 TSEEWMLDTEGVNLLAVMCHEDVDPKRTTSNHLIEIIEVLGIEAVRRALLDELRVVISFD 1380

Query: 1381 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPMMRCSFEETVDILLDAAVYAETD 1440
            GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGP+MRCSFEETVDILLDAA YAETD
Sbjct: 1381 GSYVNYRHLAILCDTMTYRGHLMAITRHGINRNDTGPLMRCSFEETVDILLDAAAYAETD 1440

Query: 1441 HLRGVTENIMLGQLAPIGTGGCALYLNDEMLKNAIELQLPSYIDGLDFGMTPSRSPISGT 1500
             LRGVTENIMLGQLAPIGTG C LYLNDEMLKNAIELQLPSY+DGL+FGMTP+RSP+SGT
Sbjct: 1441 CLRGVTENIMLGQLAPIGTGDCELYLNDEMLKNAIELQLPSYMDGLEFGMTPARSPVSGT 1500

Query: 1501 PYHEGMMSPNYLLSPNLRLSPISDAQFSPYVGGMAFSPTSSPGYSPSSPGYSPSSPGYSP 1560
            PYHEGMMSPNYLLSPN+RLSP+SDAQFSPYVGGMAFSP+SSPGYSPSSPGYSP+SPGYSP
Sbjct: 1501 PYHEGMMSPNYLLSPNMRLSPMSDAQFSPYVGGMAFSPSSSPGYSPSSPGYSPTSPGYSP 1560

Query: 1561 TSPGYSPTSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPS 1620
            TSPGYSPTSPGYSPTSP YSP+SP YSP+SP YSPTSP+YSPTSPSYSPTSPSYSPTSPS
Sbjct: 1561 TSPGYSPTSPGYSPTSPTYSPSSPGYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPS 1620

Query: 1621 YSPTSPSYSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPT 1641
            YSPTSPSYSPTSPSYSPTSP+YSPTSPAYSPTSPAYSPTSP+YSPTSPSYSPTSPSYSPT
Sbjct: 1621 YSPTSPSYSPTSPSYSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPT 1680

[Close]

BLAST of MELO3C013741 vs. TAIR 10
Match: AT5G60040.1 (nuclear RNA polymerase C1 )

HSP 1 Score: 527.3 bits (1357), Expect = 4.3e-149
Identity = 435/1472 (29.55%), Postives = 663/1472 (45.04%), Query Frame = 0


Query: 14   KVRMVQFGILSPDEIRQMSVVQIEH-GETTERGKPKVAGLSDPRLGTIDRKMKCETCTAN 73
            K++ + F +LS  E+ + + VQ+ + G      KP   GL DPR+G  ++K  C TC  N
Sbjct: 22   KIKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGLLDPRMGPPNKKSICTTCEGN 81

Query: 74   MAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPKFKQALR-IKNPK 133
               CPGH+G+L+L  P++++G+   +L I++ +C  CS +L+DE+   ++  LR ++NP+
Sbjct: 82   FQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKRCSNMLLDEK--LYEDHLRKMRNPR 141

Query: 134  NRLRKILDACK---NKTKCEGGDEIDVQGQDS--DQPVKK--SRGGCGAQQPKITIEGMK 193
                K  +  K    K        I    +    +  VKK  ++ G G    +  I G +
Sbjct: 142  MEPLKKTELAKAVVKKCSTMASQRIITCKKCGYLNGMVKKIAAQFGIGISHDRSKIHGGE 201

Query: 194  MTAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGILKRITDDDCKLLGLNPKYARPDWM 253
            +  E K+             P+     L    VLG+ KR++D DC+LL +     RP+ +
Sbjct: 202  ID-ECKSAISHTKQSTAAINPL--TYVLDPNLVLGLFKRMSDKDCELLYI---AYRPENL 261

Query: 254  ILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRR--QERNGSPAHIISEF 313
            I+  + +PP  +RPSVM+     +E+DLT +L  II  N +L +   +   SP ++  + 
Sbjct: 262  IITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASLHKILSQPTSSPKNM--QV 321

Query: 314  AQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMGKRVDFSARTV 373
               +Q  +A Y ++E+ G     Q    P+  I  RLK K GR R NL GKRV+F+ RTV
Sbjct: 322  WDTVQIEVARYINSEVRGC--QNQPEEHPLSGILQRLKGKGGRFRANLSGKRVEFTGRTV 381

Query: 374  ITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGKTGAKY----- 433
            I+PDP + I E+G+P  +A  LT+PE V+ +NIE+L++ V  GP+  PG    +Y     
Sbjct: 382  ISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGARNVRYPDGSS 441

Query: 434  --IIRDDGQRL-DLRYLKKSSDHHLELGWDNETALVNLQDVF--MNI------LMWWE-- 493
              ++ D  +R+ D   +    D HL+ G   +  L N Q     M+I      +M W   
Sbjct: 442  RTLVGDYRKRIADELAIGCIVDRHLQEG---DVVLFNRQPSLHRMSIMCHRARIMPWRTL 501

Query: 494  ------------DFDG-------------------------------------------- 553
                        DFDG                                            
Sbjct: 502  RFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGEILVASTQDFL 561

Query: 554  --------------------------------KIPAPAILKPQPLWTGKQI--NLTRTSA 613
                                             +P P ILKP  LWTGKQI   L R +A
Sbjct: 562  TSSFLITRKDTFYDRAAFSLICSYMGDGMDSIDLPTPTILKPIELWTGKQIFSVLLRPNA 621

Query: 614  ------------------WHSESETGHVTPGDTFVRIEKGELLSGTLCKKALGTSTGSLI 673
                               H   ET  +  G  +V     EL+SG L K  LG      +
Sbjct: 622  SIRVYVTLNVKEKNFKKGEHGFDETMCINDG--WVYFRNSELISGQLGKATLGNGNKDGL 681

Query: 674  H-----------------------------NAFSIGIGDTIADAATMEKINETISAAKNE 733
            +                             + FSIGI D        ++  ++I    ++
Sbjct: 682  YSILLRDYNSHAAAVCMNRLAKLSARWIGIHGFSIGIDDVQPGEELSKERKDSIQFGYDQ 741

Query: 734  VKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARDDAGSSAQKSLSESNNLKAMVTA 793
                I++    +L+ + G     S E ++  +LN  R+  G +    L   N+   M   
Sbjct: 742  CHRKIEEFNRGNLQLKAGLDGAKSLEAEITGILNTIREATGKACMSGLHWRNSPLIMSQC 801

Query: 794  GSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLT 853
            GSKGS INISQM ACVGQQ V G R P GFIDR+LPHF +    P ++GFV NS+  GLT
Sbjct: 802  GSKGSPINISQMVACVGQQTVNGHRAPDGFIDRSLPHFPRMSKSPAAKGFVANSFYSGLT 861

Query: 854  PQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYG 913
              EFFFH MGGREGL+DTAVKT+ TGY+ RRL+KA+ED++V YD TVRN+ G ++QF YG
Sbjct: 862  ATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVHYDNTVRNASGCILQFTYG 921

Query: 914  EDGMDAVWIESQKLDSLKMKKKEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVF 973
            +DGMD   +E +    L      F R+F    + +   P    P       +  E    F
Sbjct: 922  DDGMDPALMEGKDGAPL-----NFNRLF---LKVQATCP----PRSHHTYLSSEELSQKF 981

Query: 974  EAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVE 1033
            E E+  +  D+ ++ T+                                         V+
Sbjct: 982  EEEL--VRHDKSRVCTD---------------------------------------AFVK 1041

Query: 1034 AIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGE 1093
            ++ +    L V     P              +L +++  + + L+ +          +  
Sbjct: 1042 SLREFVSLLGVKSASPP-------------QVLYKASGVTDKQLEVF----------VKI 1101

Query: 1094 IESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREIINVA 1153
               R+ +  +  G  IG + AQSIGEP TQMTL TFH+AGV++ N+T GVPR+ EIIN +
Sbjct: 1102 CVFRYREKKIEAGTAIGTIGAQSIGEPGTQMTLKTFHFAGVASMNITQGVPRINEIINAS 1161

Query: 1154 KRIKTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQATEVWYDPDPMSTIIEEDID 1213
            K I TP +S  L+     T   A+ V+  +E TTL  V ++ EV       S  I  D  
Sbjct: 1162 KNISTPVISAELENPLELTS--ARWVKGRIEKTTLGQVAESIEVLMTSTSASVRIILDNK 1221

Query: 1214 FVKSYYEMPDEEIAPEKISPWLLRIELNREMMVDKKLSMANIAEKINLEFDDDLTCIFND 1273
             +         E A   I+PW ++  + +   +           K+N   D+D       
Sbjct: 1222 II---------EEACLSITPWSVKNSILKTPRI-----------KLN---DND------- 1281

Query: 1274 DNAEKLILRIRIMNDEAPKGELTDESAEDDVFLKKIESNMLTEMALRGIPDINKVFIKCG 1320
                     IR+++       + D+S     F      N+L  + + GI  + +V +   
Sbjct: 1282 ---------IRVLDTGLDITPVVDKSRAH--FNLHNLKNVLPNIIVNGIKTVERVVV--- 1341

[Close]

BLAST of MELO3C013741 vs. TAIR 10
Match: AT5G60040.2 (nuclear RNA polymerase C1 )

HSP 1 Score: 497.7 bits (1280), Expect = 3.7e-140
Identity = 439/1500 (29.27%), Postives = 659/1500 (43.93%), Query Frame = 0


Query: 14   KVRMVQFGILSPDEIRQMSVVQIEH-GETTERGKPKVAGLSDPRLGTIDRKMKCETCTAN 73
            K++ + F +LS  E+ + + VQ+ + G      KP   GL DPR+G  ++K  C TC  N
Sbjct: 22   KIKSINFSVLSDLEVMKAAEVQVWNIGLYDHSFKPYENGLLDPRMGPPNKKSICTTCEGN 81

Query: 74   MAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVC----------FNCSKILVDEEDPKFK 133
               CPGH+G+L+L  P++++G+   +L I++ +C            CS +L+DE+   ++
Sbjct: 82   FQNCPGHYGYLKLDLPVYNVGYFNFILDILKCICKVTELADYVSLRCSNMLLDEK--LYE 141

Query: 134  QALR-IKNPKNRLRKILDACK---NKTKCEGGDEIDVQGQDS--DQPVKK--SRGGCGAQ 193
              LR ++NP+    K  +  K    K        I    +    +  VKK  ++ G G  
Sbjct: 142  DHLRKMRNPRMEPLKKTELAKAVVKKCSTMASQRIITCKKCGYLNGMVKKIAAQFGIGIS 201

Query: 194  QPKITIEGMKMTAEYKAQRKKNDDQEQLPEPVERKQTLTAERVLGILKRITDDDCKLLGL 253
              +  I G ++  E K+             P+     L    VLG+ KR++D DC+LL +
Sbjct: 202  HDRSKIHGGEID-ECKSAISHTKQSTAAINPL--TYVLDPNLVLGLFKRMSDKDCELLYI 261

Query: 254  NPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLAMIIRHNENLRR--QERN 313
                 RP+ +I+  + +PP  +RPSVM+     +E+DLT +L  II  N +L +   +  
Sbjct: 262  ---AYRPENLIITCMLVPPLSIRPSVMIGGIQSNENDLTARLKQIILGNASLHKILSQPT 321

Query: 314  GSPAHIISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICSRLKAKEGRIRGNLMG 373
             SP ++  +    +Q  +A Y ++E+ G     Q    P+  I  RLK K GR R NL G
Sbjct: 322  SSPKNM--QVWDTVQIEVARYINSEVRGC--QNQPEEHPLSGILQRLKGKGGRFRANLSG 381

Query: 374  KRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIERLKELVEYGPHPPPGK 433
            KRV+F+ RTVI+PDP + I E+G+P  +A  LT+PE V+ +NIE+L++ V  GP+  PG 
Sbjct: 382  KRVEFTGRTVISPDPNLKITEVGIPILMAQILTFPECVSRHNIEKLRQCVRNGPNKYPGA 441

Query: 434  TGAKY-------IIRDDGQRL-DLRYLKKSSDHHLELGWDNETALVNLQDVF--MNI--- 493
               +Y       ++ D  +R+ D   +    D HL+ G   +  L N Q     M+I   
Sbjct: 442  RNVRYPDGSSRTLVGDYRKRIADELAIGCIVDRHLQEG---DVVLFNRQPSLHRMSIMCH 501

Query: 494  ---LMWWE--------------DFDG---------------------------------- 553
               +M W               DFDG                                  
Sbjct: 502  RARIMPWRTLRFNESVCNPYNADFDGDEMNMHVPQTEEARTEAITLMGVQNNLCTPKNGE 561

Query: 554  ------------------------------------------KIPAPAILKPQPLWTGKQ 613
                                                       +P P ILKP  LWTGKQ
Sbjct: 562  ILVASTQDFLTSSFLITRKDTFYDRAAFSLICSYMGDGMDSIDLPTPTILKPIELWTGKQ 621

Query: 614  I--NLTRTSA------------------WHSESETGHVTPGDTFVRIEKGELLSGTLCKK 673
            I   L R +A                   H   ET  +  G  +V     EL+SG L K 
Sbjct: 622  IFSVLLRPNASIRVYVTLNVKEKNFKKGEHGFDETMCINDG--WVYFRNSELISGQLGKA 681

Query: 674  ALGTSTGSL-------------------------------------IHNAFSIGIGDTIA 733
             L      L                                     IH  FSIGI D   
Sbjct: 682  TLALDIFPLGNGNKDGLYSILLRDYNSHAAAVCMNRLAKLSARWIGIH-GFSIGIDDVQP 741

Query: 734  DAATMEKINETISAAKNEVKNLIKKAQERSLEPEPGRTMMDSFENKVNQVLNKARDDAGS 793
                 ++  ++I    ++    I++    +L+ + G     S E ++  +LN  R+  G 
Sbjct: 742  GEELSKERKDSIQFGYDQCHRKIEEFNRGNLQLKAGLDGAKSLEAEITGILNTIREATGK 801

Query: 794  SAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNVEGKRIPFGFIDRTLPHFTKDD 853
            +    L   N+   M   GSKGS INISQM ACVGQQ V G R P GFIDR+LPHF +  
Sbjct: 802  ACMSGLHWRNSPLIMSQCGSKGSPINISQMVACVGQQTVNGHRAPDGFIDRSLPHFPRMS 861

Query: 854  YGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVKTSETGYIQRRLVKAMEDIMVK 913
              P ++GFV NS+  GLT  EFFFH MGGREGL+DTAVKT+ TGY+ RRL+KA+ED++V 
Sbjct: 862  KSPAAKGFVANSFYSGLTATEFFFHTMGGREGLVDTAVKTASTGYMSRRLMKALEDLLVH 921

Query: 914  YDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKKKEFERIFRYEFEDENWKPNYM 973
            YD TVRN+ G ++QF YG+DGMD   +E +    L      F R+F    + +   P   
Sbjct: 922  YDNTVRNASGCILQFTYGDDGMDPALMEGKDGAPL-----NFNRLF---LKVQATCP--- 981

Query: 974  LPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATTGENSWPMPVNLKRLIQNAQKT 1033
             P       +  E    FE E+  +  D+ ++ T+                         
Sbjct: 982  -PRSHHTYLSSEELSQKFEEEL--VRHDKSRVCTD------------------------- 1041

Query: 1034 FKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLSVEAQKNATLFFNILLRSTFASKR 1093
                            V+++ +    L V     P              +L +++  + +
Sbjct: 1042 --------------AFVKSLREFVSLLGVKSASPP-------------QVLYKASGVTDK 1101

Query: 1094 VLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCVAAQSIGEPATQMTLNTFHYAGVS 1153
             L+ +          +     R+ +  +  G  IG + AQSIGEP TQMTL TFH+AGV+
Sbjct: 1102 QLEVF----------VKICVFRYREKKIEAGTAIGTIGAQSIGEPGTQMTLKTFHFAGVA 1161

Query: 1154 AKNVTLGVPRLREIINVAKRIKTPSLSVYLKPEANKTKERAKTVQCALEYTTLRSVTQAT 1213
            + N+T GVPR+ EIIN +K I TP +S  L+     T   A+ V+  +E TTL  V ++ 
Sbjct: 1162 SMNITQGVPRINEIINASKNISTPVISAELENPLELTS--ARWVKGRIEKTTLGQVAESI 1221

Query: 1214 EVWYDPDPMSTIIEEDIDFVKSYYEMPDEEIAPEKISPWLL--------RIELNRE--MM 1273
            EV       S  I  D   +         E A   I+PW +        RI+LN     +
Sbjct: 1222 EVLMTSTSASVRIILDNKII---------EEACLSITPWSVKNSILKTPRIKLNDNDIRV 1281

Query: 1274 VDKKLSMANIAEKINLEFDDDLTCIFNDDNAEKLILRIRIMNDEAPKGELTDESAEDDVF 1320
            +D  L +  + +K            FN  N + ++  I I+N                  
Sbjct: 1282 LDTGLDITPVVDKSRAH--------FNLHNLKNVLPNI-IVNG----------------- 1341

[Close]

BLAST of MELO3C013741 vs. TAIR 10
Match: AT3G57660.1 (nuclear RNA polymerase A1 )

HSP 1 Score: 293.9 bits (751), Expect = 8.1e-79
Identity = 403/1762 (22.87%), Postives = 633/1762 (35.93%), Query Frame = 0


Query: 3    LRFPYSPAEVAKVRMVQFGILSPDEIRQMSVVQIEHGETTER-GKPKVAGLSDPRLGTID 62
            L FP   ++V  V  V+F  ++  ++R+ S +++      +  G P   GL D +LG  D
Sbjct: 17   LLFPMGASQV--VESVRFSFMTEQDVRKHSFLKVTSPILHDNVGNPFPGGLYDLKLGPKD 76

Query: 63   RKMKCETCTANMAECPGHFGHLELAKPMFHIGFMKTVLTIMRSVCFNCSKILVDEEDPK- 122
             K  C +C      CPGH GH+EL  P++H      +   ++  CF C   +   ED + 
Sbjct: 77   DKQACNSCGQLKLACPGHCGHIELVFPIYHPLLFNLLFNFLQRACFFCHHFMAKPEDVER 136

Query: 123  --FKQALRIKNPKNRLRKILDACKNKTK-----CEGGDEIDVQGQDSDQPVK-------- 182
               +  L IK      +++      K+K     CE     D   +  D  V+        
Sbjct: 137  AVSQLKLIIKGDIVSAKQLESNTPTKSKSSDESCESVVTTDSSEECEDSDVEDQRWTSLQ 196

Query: 183  ----------------KSRGGCGAQQPKI---------------------TIEGMKMTAE 242
                            KS   C    PK+                      I G+K+   
Sbjct: 197  FAEVTAVLKNFMRLSSKSCSRCKGINPKLEKPMFGWVRMRAMKDSDVGANVIRGLKLKKS 256

Query: 243  Y------------------------KAQRKKNDDQEQLPEPVERKQTLTAERVLGILKRI 302
                                     K  R+K+ +     E    K+ L    V  ILK +
Sbjct: 257  TSSVENPDGFDDSGIDALSEVEDGDKETREKSTEVAAEFEEHNSKRDLLPSEVRNILKHL 316

Query: 303  TDDD---CKLLG----LNPKYARPDWMILQVLPIPPPPVRPSVMMDTSSRSEDDLTHQLA 362
              ++   C  +G       +        L+ + +PP   RP       S  E   T  L 
Sbjct: 317  WQNEHEFCSFIGDLWQSGSEKIDYSMFFLESVLVPPTKFRPPT-TGGDSVMEHPQTVGLN 376

Query: 363  MIIRHNENLRRQERNGSPAHIISEFAQLLQFHIATYFDNELPGLPRATQRSGRPIKSICS 422
             +I  N  L     N      +    + LQ  +   FD++      AT +S R    IC 
Sbjct: 377  KVIESNNILGNACTNKLDQSKVIFRWRNLQESVNVLFDSK-----TATVQSQRDSSGICQ 436

Query: 423  RLKAKEGRIRGNLMGKRVDFSARTVITPDPTINIDELGVPWSIALNLTYPETVTPYNIER 482
             L+ KEG  R  +MGKRV+ + R+VI+PDP I ++++G+P   AL LTYPE VTP+N+E+
Sbjct: 437  LLEKKEGLFRQKMMGKRVNHACRSVISPDPYIAVNDIGIPPCFALKLTYPERVTPWNVEK 496

Query: 483  LKELVEYGPHPPPGKT--------------------------GAKYIIRDDGQRLDLRYL 542
            L+E +  GP   PG T                           ++    + G+  D+ + 
Sbjct: 497  LREAIINGPDIHPGATHYSDKSSTMKLPSTEKARRAIARKLLSSRGATTELGKTCDINFE 556

Query: 543  KKSSDHHLELGWDNETALVNLQDV-----------------------FMNILMWWEDFDG 602
             K+   H+    D +  LVN Q                         + N   +  DFDG
Sbjct: 557  GKTVHRHMR---DGDIVLVNRQPTLHKPSLMAHKVRVLKGEKTLRLHYANCSTYNADFDG 616

Query: 603  K----------------------------------------------------------- 662
                                                                        
Sbjct: 617  DEMNVHFPQDEISRAEAYNIVNANNQYARPSNGEPLRALIQDHIVSSVLLTKRDTFLDKD 676

Query: 663  -------------------------------------IPAPAILKPQPLWTGKQI---NL 722
                                                    PAILKP PLWTGKQ+    L
Sbjct: 677  HFNQLLFSSGVTDMVLSTFSGRSGKKVMVSASDAELLTVTPAILKPVPLWTGKQVITAVL 736

Query: 723  TRTSAWHSESETGHVT--PGDTF--------------------------------VRIEK 782
             + +  H        T  P D F                                + I K
Sbjct: 737  NQITKGHPPFTVEKATKLPVDFFKCRSREVKPNSGDLTKKKEIDESWKQNLNEDKLHIRK 796

Query: 783  GELLSGTLCKKAL--------------GTSTGSLIH------------NAFSIGIGDTIA 842
             E + G + K                   + G+L+             + F+ G+ D I 
Sbjct: 797  NEFVCGVIDKAQFADYGLVHTVHELYGSNAAGNLLSVFSRLFTVFLQTHGFTCGVDDLII 856

Query: 843  DAATMEKINETISAAKNEVKNLIKKA----QERSLEPEPGRTMMD--------------- 902
                 E+  + +   +N  + +++K      +  ++P+  R+ ++               
Sbjct: 857  LKDMDEERTKQLQECENVGERVLRKTFGIDVDVQIDPQDMRSRIERILYEDGESALASLD 916

Query: 903  -SFENKVNQVLNK-ARDDAGSSAQKSLSESNNLKAMVTAGSKGSFINISQMTACVGQQNV 962
             S  N +NQ  +K   +D  S         N +  M  +G+KGS +N  Q+++ +GQQ++
Sbjct: 917  RSIVNYLNQCSSKGVMNDLLSDGLLKTPGRNCISLMTISGAKGSKVNFQQISSHLGQQDL 976

Query: 963  EGKRIPFGFIDRTLPHFTKDDYGPESRGFVENSYLRGLTPQEFFFHAMGGREGLIDTAVK 1022
            EGKR+P     +TLP F   D+ P + GF+ + +L GL PQE++FH M GREGL+DTAVK
Sbjct: 977  EGKRVPRMVSGKTLPCFHPWDWSPRAGGFISDRFLSGLRPQEYYFHCMAGREGLVDTAVK 1036

Query: 1023 TSETGYIQRRLVKAMEDIMVKYDGTVRNSLGDVIQFLYGEDGMDAVWIESQKLDSLKMKK 1082
            TS +GY+QR L+K +E + V YD TVR++ G +IQF YGEDG+D                
Sbjct: 1037 TSRSGYLQRCLMKNLESLKVNYDCTVRDADGSIIQFQYGEDGVDV--------------- 1096

Query: 1083 KEFERIFRYEFEDENWKPNYMLPEHVEDLKTIREFRNVFEAEVQKLEADRYQLGTEIATT 1142
                  F  +F++     + +L +  ED+                              +
Sbjct: 1097 --HRSSFIEKFKELTINQDMVLQKCSEDM-----------------------------LS 1156

Query: 1143 GENSW--PMPVNLKRLIQNAQKTFKIDFRRASDMHPMEIVEAIDKLQERLKVVPGEDPLS 1202
            G +S+   +P++LK+    A+K                 VEA+  + ER+          
Sbjct: 1157 GASSYISDLPISLKK---GAEK----------------FVEAM-PMNERI---------- 1216

Query: 1203 VEAQKNATLFFNILLRSTFASKRVLDEYRLTREAFEWVIGEIESRFLQSLVAPGEMIGCV 1262
                               ASK V  E  L           ++S+F  SL  PGE +G +
Sbjct: 1217 -------------------ASKFVRQEELLKL---------VKSKFFASLAQPGEPVGVL 1276

Query: 1263 AAQSIGEPATQMTLNTFHYAGVSAKNVTLGVPRLREII-NVAKRIKTPSLSVYLKPEANK 1320
            AAQS+GEP+TQMTLNTFH AG    NVTLG+PRL+EI+   A  IKTP ++  L     K
Sbjct: 1277 AAQSVGEPSTQMTLNTFHLAGRGEMNVTLGIPRLQEILMTAAANIKTPIMTCPLL--KGK 1336

[Close]

BLAST of MELO3C013741 vs. TAIR 10
Match: AT4G18670.1 (Leucine-rich repeat (LRR) family protein )

HSP 1 Score: 57.8 bits (138), Expect = 9.7e-08
Identity = 110/251 (43.82%), Postives = 130/251 (51.79%), Query Frame = 0


Query: 1398 TSSPGYSPSSPGYSPS------------SPGYSPTSPGYSPTSPGYSPTSPGYSPTSPTY 1457
            T SPG SP SP  SPS            SPG SP SP   P+ P  +P SPG  PTSPT 
Sbjct: 416  TPSPGGSPPSPSISPSPPITVPSPPTTPSPGGSPPSPSIVPSPPSTTP-SPGSPPTSPT- 475

Query: 1458 SPSSPGYSPTSPAYSPT---SPSYSPTSPSYSPTSPSYSPTSPS--YSPTSPSYSPTSPS 1517
               +PG SP S   +PT   SP  SPT+P+   + PS SPT+PS   SP SPS SP+ P 
Sbjct: 476  -TPTPGGSPPSSPTTPTPGGSPPSSPTTPTPGGSPPS-SPTTPSPGGSPPSPSISPSPPI 535

Query: 1518 YSPTSPAYSPTSPAYSPTSPAYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPTSPSYSPT 1577
              P SP  +PTSP   P+  + +P+SP  SP +PS  PT  S    SP   P+ P   P+
Sbjct: 536  TVP-SPPSTPTSPGSPPSPSSPTPSSPIPSPPTPSTPPTPISPGQNSPPIIPSPPFTGPS 595

Query: 1578 SPSPTSPSYSPTSPAYSPSSPTYSPSSPYNTGPSPDYSPSSPQYSPSAGYSPTAP--GYS 1630
             PS  SP   P  P+     PT  PSSP  + P+P YSP      PS GY P  P  GYS
Sbjct: 596  PPSSPSPPLPPVIPSPPIVGPT--PSSPPPSTPTPVYSPP----PPSTGYPPPPPFTGYS 655

The following BLAST results are available for this feature:

BLAST of MELO3C013741 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008448514.2	0.0e+00	89.06	PREDICTED: LOW QUALITY PROTEIN: DNA-directed RNA polymerase II subunit 1 [Cucumi...	[more]
XP_038904743.1	0.0e+00	88.14	DNA-directed RNA polymerase II subunit RPB1 [Benincasa hispida]	[more]
XP_004146161.3	0.0e+00	87.97	DNA-directed RNA polymerase II subunit 1 [Cucumis sativus] >XP_011650276.2 DNA-d...	[more]
TYK11392.1	0.0e+00	86.66	DNA-directed RNA polymerase II subunit 1 [Cucumis melo var. makuwa]	[more]
KAA0052935.1	0.0e+00	86.48	DNA-directed RNA polymerase II subunit 1 [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C013741 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P18616	0.0e+00	77.87	DNA-directed RNA polymerase II subunit RPB1 OS=Arabidopsis thaliana OX=3702 GN=N...	[more]
P35084	0.0e+00	58.39	DNA-directed RNA polymerase II subunit rpb1 OS=Dictyostelium discoideum OX=44689...	[more]
P24928	0.0e+00	53.10	DNA-directed RNA polymerase II subunit RPB1 OS=Homo sapiens OX=9606 GN=POLR2A PE...	[more]
P11414	0.0e+00	53.02	DNA-directed RNA polymerase II subunit RPB1 OS=Cricetulus griseus OX=10029 GN=PO...	[more]
P08775	0.0e+00	53.02	DNA-directed RNA polymerase II subunit RPB1 OS=Mus musculus OX=10090 GN=Polr2a P...	[more]

BLAST of MELO3C013741 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BJ90	0.0e+00	89.06	DNA-directed RNA polymerase subunit OS=Cucumis melo OX=3656 GN=LOC103490666 PE=3...	[more]
A0A5D3CJC8	0.0e+00	86.66	DNA-directed RNA polymerase subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E5...	[more]
A0A0A0L655	0.0e+00	87.31	DNA-directed RNA polymerase subunit OS=Cucumis sativus OX=3659 GN=Csa_3G002510 P...	[more]
A0A5A7UGR7	0.0e+00	86.48	DNA-directed RNA polymerase subunit OS=Cucumis melo var. makuwa OX=1194695 GN=E6...	[more]
A0A6J1CV04	0.0e+00	86.73	DNA-directed RNA polymerase subunit OS=Momordica charantia OX=3673 GN=LOC1110148...	[more]

BLAST of MELO3C013741 vs. TAIR 10


Match Name	E-value	Identity	Description
AT4G35800.1	0.0e+00	77.87	RNA polymerase II large subunit	[more]
AT5G60040.1	4.3e-149	29.55	nuclear RNA polymerase C1	[more]
AT5G60040.2	3.7e-140	29.27	nuclear RNA polymerase C1	[more]
AT3G57660.1	8.1e-79	22.87	nuclear RNA polymerase A1	[more]
AT4G18670.1	9.7e-08	43.82	Leucine-rich repeat (LRR) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 554..581
None	No IPR available	PRINTS	PR01217	PRICHEXTENSN	coord: 1429..1450 score: 35.45 coord: 1485..1510 score: 33.08 coord: 1467..1484 score: 30.0 coord: 1450..1466 score: 35.29 coord: 1400..1416 score: 29.41
None	No IPR available	GENE3D	6.20.50.80		coord: 724..774 e-value: 3.9E-15 score: 57.0
None	No IPR available	GENE3D	2.40.40.20		coord: 343..451 e-value: 1.7E-27 score: 98.4
None	No IPR available	GENE3D	3.30.1490.180	RNA polymerase ii	coord: 385..447 e-value: 1.7E-27 score: 98.4
None	No IPR available	GENE3D	6.10.250.2940		coord: 665..723 e-value: 6.5E-34 score: 117.2
None	No IPR available	GENE3D	1.10.150.390		coord: 1277..1320 e-value: 2.3E-21 score: 77.4
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1555..1571
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 152..173
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1630..1644
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1398..1554
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1572..1629
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1398..1644
None	No IPR available	PANTHER	PTHR19376:SF56	DNA-DIRECTED RNA POLYMERASE SUBUNIT	coord: 453..537 coord: 1..449
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 538..1413 coord: 1..449
None	No IPR available	PANTHER	PTHR19376	DNA-DIRECTED RNA POLYMERASE	coord: 453..537
None	No IPR available	PANTHER	PTHR19376:SF56	DNA-DIRECTED RNA POLYMERASE SUBUNIT	coord: 538..1413
None	No IPR available	CDD	cd02584	RNAP_II_Rpb1_C	coord: 914..1326 e-value: 0.0 score: 778.308
None	No IPR available	CDD	cd02733	RNAP_II_RPB1_N	coord: 18..731 e-value: 0.0 score: 1097.2
None	No IPR available	SUPERFAMILY	64484	beta and beta-prime subunits of DNA dependent RNA-polymerase	coord: 6..1329
IPR006592	RNA polymerase, N-terminal	SMART	SM00663	rpolaneu7	coord: 242..490 e-value: 9.2E-81 score: 284.3
IPR007083	RNA polymerase Rpb1, domain 4	PFAM	PF05000	RNA_pol_Rpb1_4	coord: 574..678 e-value: 7.7E-39 score: 132.0
IPR042102	RNA polymerase Rpb1, domain 3 superfamily	GENE3D	1.10.274.100	RNA polymerase Rpb1, domain 3	coord: 455..549 e-value: 2.9E-17 score: 64.8
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PFAM	PF05001	RNA_pol_Rpb1_R	coord: 1495..1508 e-value: 0.08 score: 13.3 coord: 1425..1438 e-value: 0.0024 score: 18.2 coord: 1551..1563 e-value: 0.69 score: 10.4 coord: 1563..1576 e-value: 0.086 score: 13.2 coord: 1411..1424 e-value: 0.11 score: 12.9 coord: 1537..1550 e-value: 1.5 score: 9.3 coord: 1439..1452 e-value: 1.0 score: 9.9 coord: 1453..1466 e-value: 0.029 score: 14.7 coord: 1509..1522 e-value: 0.0055 score: 17.0 coord: 1467..1480 e-value: 0.39 score: 11.2 coord: 1523..1536 e-value: 1.5 score: 9.3 coord: 1481..1494 e-value: 0.4 score: 11.1 coord: 1396..1410 e-value: 1.0 score: 9.9
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1473..1479
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1550..1556
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1543..1549
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1536..1542
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1466..1472
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1576..1582
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1569..1575
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1487..1493
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1480..1486
IPR000684	RNA polymerase II, heptapeptide repeat, eukaryotic	PROSITE	PS00115	RNA_POL_II_REPEAT	coord: 1557..1563
IPR007073	RNA polymerase Rpb1, domain 7	PFAM	PF04990	RNA_pol_Rpb1_7	coord: 1020..1154 e-value: 2.7E-53 score: 179.6
IPR038593	RNA polymerase Rpb1, domain 7 superfamily	GENE3D	3.30.1360.140		coord: 1020..1155 e-value: 1.9E-54 score: 185.2
IPR038120	RNA polymerase Rpb1, funnel domain superfamily	GENE3D	1.10.132.30		coord: 550..664 e-value: 3.0E-47 score: 161.7
IPR000722	RNA polymerase, alpha subunit	PFAM	PF00623	RNA_pol_Rpb1_2	coord: 352..458 e-value: 2.9E-24 score: 86.1
IPR007075	RNA polymerase Rpb1, domain 6	PFAM	PF04992	RNA_pol_Rpb1_6	coord: 751..935 e-value: 5.9E-65 score: 218.7
IPR007066	RNA polymerase Rpb1, domain 3	PFAM	PF04983	RNA_pol_Rpb1_3	coord: 453..541 e-value: 1.8E-10 score: 40.9
IPR044893	RNA polymerase Rpb1, clamp domain superfamily	GENE3D	4.10.860.120	RNA polymerase II, clamp domain	coord: 4..127 e-value: 6.2E-35 score: 121.7 coord: 267..315 e-value: 6.6E-6 score: 27.8
IPR007080	RNA polymerase Rpb1, domain 1	PFAM	PF04997	RNA_pol_Rpb1_1	coord: 14..350 e-value: 7.0E-111 score: 370.5
IPR007081	RNA polymerase Rpb1, domain 5	PFAM	PF04998	RNA_pol_Rpb1_5	coord: 685..1275 e-value: 3.9E-105 score: 351.7

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C013741.1	MELO3C013741.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0006366	transcription by RNA polymerase II
biological_process	GO:0006351	transcription, DNA-templated
molecular_function	GO:0003677	DNA binding
molecular_function	GO:0003899	DNA-directed 5'-3' RNA polymerase activity