MELO3C013682 (gene) Melon (DHL92) v4

Overview


Name	MELO3C013682
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Histone H2A
Location	chr11: 19500919 .. 19501884 (-)
RNA-Seq Expression	MELO3C013682
Synteny	MELO3C013682

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGACAGCTCACGTTCTCCCGACACATTAGCCAGTTCCTACTGCGGTATAAAATCCAAACTCTCAACGACGATCCGACTCAAACCCGTCTCTCACTCAATCACAACTCCGATAACTCCCCGTCGACTAAAAGCTTCATTCTCTTCAACGTAAAACACCTAATCAGTGTCCAATGGAAACTGGCGGCAAGGCAAAGAAAGGCGCAGGAGGAAGAAGAGGAGGCGAGAAGAAGAAGGCAGTTTCTCGCCTCCGTCAAAGCCGGTCTACAGTTCCCCGTCGGCCGTATAGCTCGTTATCTGAAGAAAGGAAGATACGCTCAGCGTGTCCGGTACCGGCGCTCCCGTCTACTTAGCCGCAGTAATGGAGTATTTAGCCGCTGAGGTAACCAGATCGTCTTTTTTTTTTTTTTTTTTTTTCCTCCATTTCTTCTTCCTCATCCTTCTCTGTCGAATCGCCATTGTGTTGATCTTAGATATTTCGATTTACAGGTTCTCGAGTTGGCTGGAAATGCGGCTAGAGACAACAAGAAGAAACAGGATCATTCCAAGACACGTTCTATTGGCGATTAGGAACGACGAGGAACTTGGAAAGTTGCTCGCCGGCGTAACTATTGCTAGCGGTGGTGTTCTTCCGAATATCAATCCGGTTTTGTTGCCGAAGAAGACAGATAAGGGTACGAAAGAACCGAAATCGCCATCAAAGGCCGGAAAATCTCCATCGAAGGCGGCTTAAAGGGTGGAATTATAGAGTTAGGGTTGGATGAATGTTGTAATTTATGATGGTATGTTGGATTTGTTCTTCAATGGTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTGTAAGTGTAGACGAAAGAAGAATTAGGTATTTGGGAATGCAATACTGTATTCGATATTTACAAGCGAGGAATCAATGAGATGACTTATCATGTTCTTCATCTTCAAGAAATTGTTTTGTTATTCATCTTC

mRNA sequence

CGACAGCTCACGTTCTCCCGACACATTAGCCAGTTCCTACTGCGGTATAAAATCCAAACTCTCAACGACGATCCGACTCAAACCCGTCTCTCACTCAATCACAACTCCGATAACTCCCCGTCGACTAAAAGCTTCATTCTCTTCAACGTAAAACACCTAATCAGTGTCCAATGGAAACTGGCGGCAAGGCAAAGAAAGGCGCAGGAGGAAGAAGAGGAGGCGAGAAGAAGAAGGCAGTTTCTCGCCTCCGTCAAAGCCGGTCTACAGTTCCCCGTCGGCCGTATAGCTCGTTATCTGAAGAAAGGAAGATACGCTCAGCGTGTCCGGTACCGGCGCTCCCGTCTACTTAGCCGCAGTAATGGAGTATTTAGCCGCTGAGGTTCTCGAGTTGGCTGGAAATGCGGCTAGAGACAACAAGAAGAAACAGGATCATTCCAAGACACGTTCTATTGGCGATTAGGAACGACGAGGAACTTGGAAAGTTGCTCGCCGGCGTAACTATTGCTAGCGGTGGTGTTCTTCCGAATATCAATCCGGTTTTGTTGCCGAAGAAGACAGATAAGGGTACGAAAGAACCGAAATCGCCATCAAAGGCCGGAAAATCTCCATCGAAGGCGGCTTAAAGGGTGGAATTATAGAGTTAGGGTTGGATGAATGTTGTAATTTATGATGGTATGTTGGATTTGTTCTTCAATGGTTTTTTTTTTTTTTTTTTTTGTTTTTTTTTTTGTAAGTGTAGACGAAAGAAGAATTAGGTATTTGGGAATGCAATACTGTATTCGATATTTACAAGCGAGGAATCAATGAGATGACTTATCATGTTCTTCATCTTCAAGAAATTGTTTTGTTATTCATCTTC

Coding sequence (CDS)

CGACAGCTCACGTTCTCCCGACACATTAGCCAGTTCCTACTGCGGTATAAAATCCAAACTCTCAACGACGATCCGACTCAAACCCGTCTCTCACTCAATCACAACTCCGATAACTCCCCGTCGACTAAAAGCTTCATTCTCTTCAACGTAAAACACCTAATCAGTGTCCAATGGAAACTGGCGGCAAGGCAAAGAAAGGCGCAGGAGGAAGAAGAGGAGGCGAGAAGAAGAAGGCAGTTTCTCGCCTCCGTCAAAGCCGGTCTACAGTTCCCCGTCGGCCGTATAGCTCGTTATCTGAAGAAAGGAAGATACGCTCAGCGTGTCCGGTACCGGCGCTCCCGTCTACTTAGCCGCAGTAATGGAGTATTTAGCCGCTGA

Protein sequence

RQLTFSRHISQFLLRYKIQTLNDDPTQTRLSLNHNSDNSPSTKSFILFNVKHLISVQWKLAARQRKAQEEEEEARRRRQFLASVKAGLQFPVGRIARYLKKGRYAQRVRYRRSRLLSRSNGVFSR

Homology

[Close]

BLAST of MELO3C013682 vs. ExPASy Swiss-Prot
Match: P02275 (Histone H2A.1 OS=Triticum aestivum OX=4565 GN=H2A-9 PE=1 SV=2)

HSP 1 Score: 52.8 bits (125), Expect = 3.3e-06
Identity = 26/33 (78.79%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 76  RRRQFLASVKAGLQFPVGRIARYLKKGRYAQRV 109
           R++    SVKAGLQFPVGRI RYLKKGRYAQRV
Sbjct: 9   RKKAVTRSVKAGLQFPVGRIGRYLKKGRYAQRV 41

[Close]

BLAST of MELO3C013682 vs. ExPASy Swiss-Prot
Match: Q43213 (Protein H2A.5 OS=Triticum aestivum OX=4565 GN=H2A-2 PE=2 SV=3)

HSP 1 Score: 52.8 bits (125), Expect = 3.3e-06
Identity = 26/33 (78.79%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 76  RRRQFLASVKAGLQFPVGRIARYLKKGRYAQRV 109
           R++    SVKAGLQFPVGRI RYLKKGRYAQRV
Sbjct: 9   RKKAVTRSVKAGLQFPVGRIGRYLKKGRYAQRV 41

[Close]

BLAST of MELO3C013682 vs. ExPASy Swiss-Prot
Match: A2WQG7 (Probable histone H2A.5 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_002060 PE=3 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 5.7e-06
Identity = 25/33 (75.76%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 76  RRRQFLASVKAGLQFPVGRIARYLKKGRYAQRV 109
           R++    SVKAGLQFPVGRI RYLKKGRYAQR+
Sbjct: 25  RKKAVSRSVKAGLQFPVGRIGRYLKKGRYAQRI 57

[Close]

BLAST of MELO3C013682 vs. ExPASy Swiss-Prot
Match: Q94E96 (Probable histone H2A.5 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0502700 PE=2 SV=1)

HSP 1 Score: 52.0 bits (123), Expect = 5.7e-06
Identity = 25/33 (75.76%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 76  RRRQFLASVKAGLQFPVGRIARYLKKGRYAQRV 109
           R++    SVKAGLQFPVGRI RYLKKGRYAQR+
Sbjct: 25  RKKAVSRSVKAGLQFPVGRIGRYLKKGRYAQRI 57

[Close]

BLAST of MELO3C013682 vs. ExPASy Swiss-Prot
Match: Q2HU65 (Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 PE=3 SV=1)

HSP 1 Score: 51.6 bits (122), Expect = 7.5e-06
Identity = 24/33 (72.73%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 76  RRRQFLASVKAGLQFPVGRIARYLKKGRYAQRV 109
           R++    S++AGLQFPVGRI RYLKKGRYAQRV
Sbjct: 20  RKKSVTRSIRAGLQFPVGRIGRYLKKGRYAQRV 52

[Close]

BLAST of MELO3C013682 vs. NCBI nr
Match: CAD6224341.1 (unnamed protein product [Miscanthus lutarioriparius])

HSP 1 Score: 58.2 bits (139), Expect = 6.1e-05
Identity = 36/59 (61.02%), Postives = 41/59 (69.49%), Query Frame = 0


Query: 57  QWKLAARQRKAQEEEEEAR-------RRRQFLASVKAGLQFPVGRIARYLKKGRYAQRV 109
           +WKL A +  A+EEEE A        R++    SVKAGLQFPVGRI RYLKKGRYAQRV
Sbjct: 24  RWKLGA-EEGAKEEEEAATGRKAGGPRKKSVSRSVKAGLQFPVGRIGRYLKKGRYAQRV 81

[Close]

BLAST of MELO3C013682 vs. NCBI nr
Match: KAF4352633.1 (hypothetical protein G4B88_008802, partial [Cannabis sativa])

HSP 1 Score: 56.2 bits (134), Expect = 2.3e-04
Identity = 32/52 (61.54%), Postives = 37/52 (71.15%), Query Frame = 0


Query: 58  WKLAARQRKAQEEEEE--ARRRRQFLASVKAGLQFPVGRIARYLKKGRYAQR 108
           WKL  + R+   E EE    R++    SVKAGLQFPVGRIAR+LKKGRYAQR
Sbjct: 140 WKLQNQPREEPREPEEKGGDRKKSVTKSVKAGLQFPVGRIARFLKKGRYAQR 191

[Close]

BLAST of MELO3C013682 vs. NCBI nr
Match: KAF2307261.1 (hypothetical protein GH714_025866 [Hevea brasiliensis])

HSP 1 Score: 54.7 bits (130), Expect = 6.7e-04
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 65  RKAQEEEEEARRRRQFLASVKAGLQFPVGRIARYLKKGRYAQR 108
           R+   EEEE  R++    S++AGLQFPVGRIAR+LKKGRYAQR
Sbjct: 503 RRKVPEEEEGDRKKAVSKSIRAGLQFPVGRIARFLKKGRYAQR 545

[Close]

BLAST of MELO3C013682 vs. NCBI nr
Match: XP_016538629.1 (PREDICTED: histone H2A.1-like [Capsicum annuum] >PHT41291.1 Histone H2A.2.2 [Capsicum baccatum] >PHT98930.1 Histone H2A.2.2 [Capsicum chinense] >KAF3623085.1 Histone H2A.2.2 [Capsicum annuum] >KAF3678650.1 Histone H2A.2.2 [Capsicum annuum] >PHT61676.1 Histone H2A.2.2 [Capsicum annuum])

HSP 1 Score: 54.3 bits (129), Expect = 8.8e-04
Identity = 30/48 (62.50%), Postives = 35/48 (72.92%), Query Frame = 0


Query: 61  AARQRKAQEEEEEARRRRQFLASVKAGLQFPVGRIARYLKKGRYAQRV 109
           AA+Q K     +   R++    SVKAGLQFPVGRIAR+LKKGRYAQRV
Sbjct: 3   AAKQTKGAAGRKGGPRKKAVTKSVKAGLQFPVGRIARFLKKGRYAQRV 50

[Close]

BLAST of MELO3C013682 vs. ExPASy TrEMBL
Match: A0A7J6E2I3 (Histone H2A OS=Cannabis sativa OX=3483 GN=G4B88_008802 PE=3 SV=1)

HSP 1 Score: 56.2 bits (134), Expect = 1.1e-04
Identity = 32/52 (61.54%), Postives = 37/52 (71.15%), Query Frame = 0


Query: 58  WKLAARQRKAQEEEEE--ARRRRQFLASVKAGLQFPVGRIARYLKKGRYAQR 108
           WKL  + R+   E EE    R++    SVKAGLQFPVGRIAR+LKKGRYAQR
Sbjct: 140 WKLQNQPREEPREPEEKGGDRKKSVTKSVKAGLQFPVGRIARFLKKGRYAQR 191

[Close]

BLAST of MELO3C013682 vs. ExPASy TrEMBL
Match: A0A6A6M0N1 (Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_025866 PE=3 SV=1)

HSP 1 Score: 54.7 bits (130), Expect = 3.3e-04
Identity = 28/43 (65.12%), Postives = 34/43 (79.07%), Query Frame = 0


Query: 65  RKAQEEEEEARRRRQFLASVKAGLQFPVGRIARYLKKGRYAQR 108
           R+   EEEE  R++    S++AGLQFPVGRIAR+LKKGRYAQR
Sbjct: 503 RRKVPEEEEGDRKKAVSKSIRAGLQFPVGRIARFLKKGRYAQR 545

[Close]

BLAST of MELO3C013682 vs. ExPASy TrEMBL
Match: A0A2G2W7T1 (Histone H2A OS=Capsicum baccatum OX=33114 GN=CQW23_20145 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 4.2e-04
Identity = 30/48 (62.50%), Postives = 35/48 (72.92%), Query Frame = 0


Query: 61  AARQRKAQEEEEEARRRRQFLASVKAGLQFPVGRIARYLKKGRYAQRV 109
           AA+Q K     +   R++    SVKAGLQFPVGRIAR+LKKGRYAQRV
Sbjct: 3   AAKQTKGAAGRKGGPRKKAVTKSVKAGLQFPVGRIARFLKKGRYAQRV 50

[Close]

BLAST of MELO3C013682 vs. ExPASy TrEMBL
Match: A0A2G3AXI0 (Histone H2A OS=Capsicum chinense OX=80379 GN=BC332_32078 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 4.2e-04
Identity = 30/48 (62.50%), Postives = 35/48 (72.92%), Query Frame = 0


Query: 61  AARQRKAQEEEEEARRRRQFLASVKAGLQFPVGRIARYLKKGRYAQRV 109
           AA+Q K     +   R++    SVKAGLQFPVGRIAR+LKKGRYAQRV
Sbjct: 3   AAKQTKGAAGRKGGPRKKAVTKSVKAGLQFPVGRIARFLKKGRYAQRV 50

[Close]

BLAST of MELO3C013682 vs. ExPASy TrEMBL
Match: A0A1U8E4B6 (Histone H2A OS=Capsicum annuum OX=4072 GN=T459_34465 PE=3 SV=1)

HSP 1 Score: 54.3 bits (129), Expect = 4.2e-04
Identity = 30/48 (62.50%), Postives = 35/48 (72.92%), Query Frame = 0


Query: 61  AARQRKAQEEEEEARRRRQFLASVKAGLQFPVGRIARYLKKGRYAQRV 109
           AA+Q K     +   R++    SVKAGLQFPVGRIAR+LKKGRYAQRV
Sbjct: 3   AAKQTKGAAGRKGGPRKKAVTKSVKAGLQFPVGRIARFLKKGRYAQRV 50

[Close]

BLAST of MELO3C013682 vs. TAIR 10
Match: AT5G27670.1 (histone H2A 7 )

HSP 1 Score: 49.7 bits (117), Expect = 2.0e-06
Identity = 25/32 (78.12%), Postives = 27/32 (84.38%), Query Frame = 0


Query: 76  RRRQFLASVKAGLQFPVGRIARYLKKGRYAQR 108
           R++    SVKAGLQFPVGRIARYLKKGRYA R
Sbjct: 22  RKKSVSKSVKAGLQFPVGRIARYLKKGRYALR 53

[Close]

BLAST of MELO3C013682 vs. TAIR 10
Match: AT1G51060.1 (histone H2A 10 )

HSP 1 Score: 47.4 bits (111), Expect = 1.0e-05
Identity = 22/26 (84.62%), Postives = 25/26 (96.15%), Query Frame = 0


Query: 83  SVKAGLQFPVGRIARYLKKGRYAQRV 109
           S KAGLQFPVGRIAR+LKKG+YA+RV
Sbjct: 20  SSKAGLQFPVGRIARFLKKGKYAERV 45

[Close]

BLAST of MELO3C013682 vs. TAIR 10
Match: AT5G02560.1 (histone H2A 12 )

HSP 1 Score: 47.4 bits (111), Expect = 1.0e-05
Identity = 22/33 (66.67%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 76  RRRQFLASVKAGLQFPVGRIARYLKKGRYAQRV 109
           +++    SVK+GLQFPVGRI RYLKKGRY++RV
Sbjct: 21  KKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRV 53

[Close]

BLAST of MELO3C013682 vs. TAIR 10
Match: AT5G02560.2 (histone H2A 12 )

HSP 1 Score: 47.4 bits (111), Expect = 1.0e-05
Identity = 22/33 (66.67%), Postives = 28/33 (84.85%), Query Frame = 0


Query: 76  RRRQFLASVKAGLQFPVGRIARYLKKGRYAQRV 109
           +++    SVK+GLQFPVGRI RYLKKGRY++RV
Sbjct: 21  KKKPVSRSVKSGLQFPVGRIGRYLKKGRYSKRV 53

[Close]

BLAST of MELO3C013682 vs. TAIR 10
Match: AT5G59870.1 (histone H2A 6 )

HSP 1 Score: 47.0 bits (110), Expect = 1.3e-05
Identity = 23/35 (65.71%), Postives = 28/35 (80.00%), Query Frame = 0


Query: 74  ARRRRQFLASVKAGLQFPVGRIARYLKKGRYAQRV 109
           A + +    S+KAGLQFPVGRI R+LKKGRYAQR+
Sbjct: 19  APKTKSVSKSMKAGLQFPVGRITRFLKKGRYAQRL 53

The following BLAST results are available for this feature:

BLAST of MELO3C013682 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P02275	3.3e-06	78.79	Histone H2A.1 OS=Triticum aestivum OX=4565 GN=H2A-9 PE=1 SV=2	[more]
Q43213	3.3e-06	78.79	Protein H2A.5 OS=Triticum aestivum OX=4565 GN=H2A-2 PE=2 SV=3	[more]
A2WQG7	5.7e-06	75.76	Probable histone H2A.5 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_002060 PE=3...	[more]
Q94E96	5.7e-06	75.76	Probable histone H2A.5 OS=Oryza sativa subsp. japonica OX=39947 GN=Os01g0502700 ...	[more]
Q2HU65	7.5e-06	72.73	Probable histone H2A.2 OS=Medicago truncatula OX=3880 GN=MtrDRAFT_AC149210g4v1 P...	[more]

BLAST of MELO3C013682 vs. NCBI nr


Match Name	E-value	Identity	Description
CAD6224341.1	6.1e-05	61.02	unnamed protein product [Miscanthus lutarioriparius]	[more]
KAF4352633.1	2.3e-04	61.54	hypothetical protein G4B88_008802, partial [Cannabis sativa]	[more]
KAF2307261.1	6.7e-04	65.12	hypothetical protein GH714_025866 [Hevea brasiliensis]	[more]
XP_016538629.1	8.8e-04	62.50	PREDICTED: histone H2A.1-like [Capsicum annuum] >PHT41291.1 Histone H2A.2.2 [Cap...	[more]

BLAST of MELO3C013682 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A7J6E2I3	1.1e-04	61.54	Histone H2A OS=Cannabis sativa OX=3483 GN=G4B88_008802 PE=3 SV=1	[more]
A0A6A6M0N1	3.3e-04	65.12	Uncharacterized protein OS=Hevea brasiliensis OX=3981 GN=GH714_025866 PE=3 SV=1	[more]
A0A2G2W7T1	4.2e-04	62.50	Histone H2A OS=Capsicum baccatum OX=33114 GN=CQW23_20145 PE=3 SV=1	[more]
A0A2G3AXI0	4.2e-04	62.50	Histone H2A OS=Capsicum chinense OX=80379 GN=BC332_32078 PE=3 SV=1	[more]
A0A1U8E4B6	4.2e-04	62.50	Histone H2A OS=Capsicum annuum OX=4072 GN=T459_34465 PE=3 SV=1	[more]

BLAST of MELO3C013682 vs. TAIR 10


Match Name	E-value	Identity	Description
AT5G27670.1	2.0e-06	78.13	histone H2A 7	[more]
AT1G51060.1	1.0e-05	84.62	histone H2A 10	[more]
AT5G02560.1	1.0e-05	66.67	histone H2A 12	[more]
AT5G02560.2	1.0e-05	66.67	histone H2A 12	[more]
AT5G59870.1	1.3e-05	65.71	histone H2A 6	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR009072	Histone-fold	GENE3D	1.10.20.10	Histone, subunit A	coord: 4..117 e-value: 5.0E-10 score: 41.5
IPR009072	Histone-fold	SUPERFAMILY	47113	Histone-fold	coord: 37..110
None	No IPR available	PANTHER	PTHR23430	HISTONE H2A	coord: 72..108
None	No IPR available	PANTHER	PTHR23430:SF296	HISTONE H2A	coord: 72..108
IPR032458	Histone H2A conserved site	PROSITE	PS00046	HISTONE_H2A	coord: 86..92

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C013682.1	MELO3C013682.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0046982	protein heterodimerization activity