MELO3C013585 (gene) Melon (DHL92) v4

Overview
NameMELO3C013585
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Locationchr11: 17384132 .. 17384708 (-)
RNA-Seq ExpressionMELO3C013585
SyntenyMELO3C013585
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGATTAAGGGTCCAAAATTAACATTTGTTAGGAAACAATTAAAACTCAACTCAAACTTACAAAAAAAATGGTAAGAAGCAAAAAATAAGCTTGGTGGCTCAAATGGCTTGGCTAGGAAGAAGAACTGGCTAAGTGACTCGGCTTGGCTAGGAAGCAGACGCGGCGCGACTCGGATCCAACAGACGCACGGTGTGGCTTGGCTCGGGTGGACCTTGTGCACATGTGGCTTGGCGACTGCTCCTAATCGAACGTTCGTTGACGGCAGCGAGCGACGGACACGTGACAGAGGGTAGTGGACCTACGCGGCTCGATGGAACACACTTAGCTTTAACGGTGAAACGACCGTGGAGATACCGAGACGACGGATCAACAACGAAGGCAAAGGCGGAGACCCACCGACGCTTGATGGACGCACGAACGGTCAGAGACTTGACGCGAAAGGGAAGAGACACAGATGAGGTTGAGCATGGCTGGCTGCCGGGGATACGGATCGATGGCGAGGAGGGCGGTTCGGGAGTGGGTTGCGCGGTGCGGTGGCTGACGACTGGAAGAGCGATAGCGGCAGCGGCGGCTTAG

mRNA sequence

ATGATTAAGGGTCCAAAATTAACATTTGAAGCAGACGCGGCGCGACTCGGATCCAACAGACGCACGGTGTGGCTTGGCTCGGGTGGACCTTGTGCACATGTGGCTTGGCGACTGCTCCTAATCGAACGTTCGTTGACGGCAGCGAGCGACGGACACGTGACAGAGGGTAGTGGACCTACGCGGCTCGATGGAACACACTTAGCTTTAACGGTGAAACGACCGTGGAGATACCGAGACGACGGATCAACAACGAAGGCAAAGGCGGAGACCCACCGACGCTTGATGGACGCACGAACGGTCAGAGACTTGACGCGAAAGGGAAGAGACACAGATGAGGTTGAGCATGGCTGGCTGCCGGGGATACGGATCGATGGCGAGGAGGGCGGTTCGGGAGTGGGTTGCGCGGTGCGGTGGCTGACGACTGGAAGAGCGATAGCGGCAGCGGCGGCTTAG

Coding sequence (CDS)

ATGATTAAGGGTCCAAAATTAACATTTGAAGCAGACGCGGCGCGACTCGGATCCAACAGACGCACGGTGTGGCTTGGCTCGGGTGGACCTTGTGCACATGTGGCTTGGCGACTGCTCCTAATCGAACGTTCGTTGACGGCAGCGAGCGACGGACACGTGACAGAGGGTAGTGGACCTACGCGGCTCGATGGAACACACTTAGCTTTAACGGTGAAACGACCGTGGAGATACCGAGACGACGGATCAACAACGAAGGCAAAGGCGGAGACCCACCGACGCTTGATGGACGCACGAACGGTCAGAGACTTGACGCGAAAGGGAAGAGACACAGATGAGGTTGAGCATGGCTGGCTGCCGGGGATACGGATCGATGGCGAGGAGGGCGGTTCGGGAGTGGGTTGCGCGGTGCGGTGGCTGACGACTGGAAGAGCGATAGCGGCAGCGGCGGCTTAG

Protein sequence

MIKGPKLTFEADAARLGSNRRTVWLGSGGPCAHVAWRLLLIERSLTAASDGHVTEGSGPTRLDGTHLALTVKRPWRYRDDGSTTKAKAETHRRLMDARTVRDLTRKGRDTDEVEHGWLPGIRIDGEEGGSGVGCAVRWLTTGRAIAAAAA
Homology
[Close]
BLAST of MELO3C013585 vs. NCBI nr
Match: KAA0062151.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 240.4 bits (612), Expect = 1.0e-59
Identity = 114/121 (94.21%), Postives = 117/121 (96.69%), Query Frame = 0 

Query: 10  EADAARLGSNRRTVWLGSGGPCAHVAWRLLLIERSLTAASDGHVTEGSGPTRLDGTHLAL 69
           EADAARLGSNRRTVWLGSGGPCAHVAW+LLLIERSLTA SD HVTEGSGPTRLDGTHLAL
Sbjct: 239 EADAARLGSNRRTVWLGSGGPCAHVAWQLLLIERSLTAVSDRHVTEGSGPTRLDGTHLAL 298

Query: 70  TVKRPWRYRDDGSTTKAKAETHRRLMDARTVRDLTRKGRDTDEVEHGWLPGIRIDGEEGG 129
           TVKRPWRYRDDGSTTKAKAETHRRLMDARTV+DLTRKGRDTDEVEH WLPG+RIDGEEG 
Sbjct: 299 TVKRPWRYRDDGSTTKAKAETHRRLMDARTVKDLTRKGRDTDEVEHDWLPGLRIDGEEGS 358

Query: 130 S 131
           S
Sbjct: 359 S 359

[Close]
BLAST of MELO3C013585 vs. ExPASy TrEMBL
Match: A0A5A7V8Y5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold89G005210 PE=4 SV=1)

HSP 1 Score: 240.4 bits (612), Expect = 5.0e-60
Identity = 114/121 (94.21%), Postives = 117/121 (96.69%), Query Frame = 0 

Query: 10  EADAARLGSNRRTVWLGSGGPCAHVAWRLLLIERSLTAASDGHVTEGSGPTRLDGTHLAL 69
           EADAARLGSNRRTVWLGSGGPCAHVAW+LLLIERSLTA SD HVTEGSGPTRLDGTHLAL
Sbjct: 239 EADAARLGSNRRTVWLGSGGPCAHVAWQLLLIERSLTAVSDRHVTEGSGPTRLDGTHLAL 298

Query: 70  TVKRPWRYRDDGSTTKAKAETHRRLMDARTVRDLTRKGRDTDEVEHGWLPGIRIDGEEGG 129
           TVKRPWRYRDDGSTTKAKAETHRRLMDARTV+DLTRKGRDTDEVEH WLPG+RIDGEEG 
Sbjct: 299 TVKRPWRYRDDGSTTKAKAETHRRLMDARTVKDLTRKGRDTDEVEHDWLPGLRIDGEEGS 358

Query: 130 S 131
           S
Sbjct: 359 S 359

The following BLAST results are available for this feature:
BLAST of MELO3C013585 vs.
Match NameE-valueIdentityDescription
BLAST of MELO3C013585 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0062151.11.0e-5994.21retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of MELO3C013585 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7V8Y55.0e-6094.21Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
BLAST of MELO3C013585 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C013585.1MELO3C013585.1mRNA