MELO3C013561.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C013561.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionCell wall protein
Locationchr11: 17652409 .. 17652771 (-)
RNA-Seq ExpressionMELO3C013561.jh1
SyntenyMELO3C013561.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDSstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCTCACAGAATCACACCTTCTCTGTTCCCTATCTTCCTTGTGATCCTCGCAATGACTGGAGAAGCAGTTGCAGCACGTGATTTTCCTGAAAGGTCGAGCAGTGATGATGATAAGAAACAGCCTTAATGGCTGATTGGATATGATAGGGTCAGTGTGCTAATTCCTGGCATTGGACGCATCACATTGTCACCATACGACAAAGGCAGCCATGGAGGAGGGCATTCGAGTTCATATGGCAGTAACCCAGCTCCAAAACGTCAATATATTCCAGGTGGGGATGATAATTTCATTCCAAATCCTGGATATGAGGTGCCAATCCCTGCCAATATTGGTGGTGTTAAAGAAACATCCTATCCTTGA

mRNA sequence

ATGGCTCACAGAATCACACCTTCTCTGTTCCCTATCTTCCTTGTGATCCTCGCAATGACTGGAGAAGCAGTTGCAGCACGTGATTTTCCTGAAAGGGTCAGTGTGCTAATTCCTGGCATTGGACGCATCACATTGTCACCATACGACAAAGGCAGCCATGGAGGAGGGCATTCGAGTTCATATGGCAGTAACCCAGCTCCAAAACGTCAATATATTCCAGGTGGGGATGATAATTTCATTCCAAATCCTGGATATGAGGTGCCAATCCCTGCCAATATTGGTGGTGTTAAAGAAACATCCTATCCTTGA

Coding sequence (CDS)

ATGGCTCACAGAATCACACCTTCTCTGTTCCCTATCTTCCTTGTGATCCTCGCAATGACTGGAGAAGCAGTTGCAGCACGTGATTTTCCTGAAAGGGTCAGTGTGCTAATTCCTGGCATTGGACGCATCACATTGTCACCATACGACAAAGGCAGCCATGGAGGAGGGCATTCGAGTTCATATGGCAGTAACCCAGCTCCAAAACGTCAATATATTCCAGGTGGGGATGATAATTTCATTCCAAATCCTGGATATGAGGTGCCAATCCCTGCCAATATTGGTGGTGTTAAAGAAACATCCTATCCTTGA

Protein sequence

MAHRITPSLFPIFLVILAMTGEAVAARDFPERVSVLIPGIGRITLSPYDKGSHGGGHSSSYGSNPAPKRQYIPGGDDNFIPNPGYEVPIPANIGGVKETSYP
Homology
BLAST of MELO3C013561.jh1 vs. NCBI nr
Match: KAA0065341.1 (putative cell wall protein [Cucumis melo var. makuwa] >TYJ96609.1 putative cell wall protein [Cucumis melo var. makuwa])

HSP 1 Score: 200 bits (509), Expect = 1.10e-64
Identity = 100/102 (98.04%), Postives = 100/102 (98.04%), Query Frame = 0

Query: 1   MAHRITPSLFPIFLVILAMTGEAVAARDFPERVSVLIPGIGRITLSPYDKGSHGGGHSSS 60
           MAHRITPSLFPIFLVILAMTGEAVAARDFPE  SVLIPGIGRITLSPYDKGSHGGGHSSS
Sbjct: 1   MAHRITPSLFPIFLVILAMTGEAVAARDFPE--SVLIPGIGRITLSPYDKGSHGGGHSSS 60

Query: 61  YGSNPAPKRQYIPGGDDNFIPNPGYEVPIPANIGGVKETSYP 102
           YGSNPAPKRQYIPGGDDNFIPNPGYEVPIPANIGGVKETSYP
Sbjct: 61  YGSNPAPKRQYIPGGDDNFIPNPGYEVPIPANIGGVKETSYP 100

BLAST of MELO3C013561.jh1 vs. NCBI nr
Match: XP_022970746.1 (putative cell wall protein [Cucurbita maxima])

HSP 1 Score: 144 bits (362), Expect = 5.16e-42
Identity = 77/119 (64.71%), Postives = 85/119 (71.43%), Query Frame = 0

Query: 1   MAHRITPSLFPIFLVILAMTGEAVAARDFPER-----------------VSVLIPGIGRI 60
           MA+R   SL   F+VILA+ GEAVAAR+  ER                 VSVLIPGIGR 
Sbjct: 1   MANRTIASLLATFIVILAIAGEAVAARNVHERSSIDDKKQPEWVAGHDGVSVLIPGIGRF 60

Query: 61  TLSPYDKGSHGGGHSSSYGSNPAPKRQYIPGGDDNFIPNPGYEVPIPANIGGVKETSYP 102
           TLSP+DKGS G G + SYGSNPAP+RQYIPGGDDNFIPNPG+EVPIPA I GVKET YP
Sbjct: 61  TLSPHDKGSSGEGQAGSYGSNPAPRRQYIPGGDDNFIPNPGFEVPIPAKISGVKETPYP 119

BLAST of MELO3C013561.jh1 vs. NCBI nr
Match: XP_022140620.1 (putative cell wall protein [Momordica charantia])

HSP 1 Score: 124 bits (312), Expect = 2.11e-34
Identity = 72/120 (60.00%), Postives = 81/120 (67.50%), Query Frame = 0

Query: 1   MAHRITPSLFPIFLVI-LAMTGEAVAARDFPER-----------------VSVLIPGIGR 60
           MA+R   SL PI ++I LA+ GEA AAR+  E+                 VSVLIPGIGR
Sbjct: 1   MAYRTISSLLPILIIIILAVAGEAAAARNAREKSSIDDKKQPQWLVGYDGVSVLIPGIGR 60

Query: 61  ITLSPYDKGSHGGGHSSSYGSNPAPKRQYIPGGDDNFIPNPGYEVPIPANIGGVKETSYP 102
           ITL PYDKGS G  H+ SYGSNPA   QYIPGGDDNFIPNPG+EVP PANIG VK T +P
Sbjct: 61  ITLPPYDKGSFGE-HAGSYGSNPASSGQYIPGGDDNFIPNPGFEVPNPANIGVVKATPHP 119

BLAST of MELO3C013561.jh1 vs. NCBI nr
Match: CAB4304874.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 77.4 bits (189), Expect = 1.24e-15
Identity = 49/125 (39.20%), Postives = 61/125 (48.80%), Query Frame = 0

Query: 1   MAHRITPSLFPIF---LVILAMTGEAVAARDFPERV-------------SVLIPGIGRIT 60
           MA +   S  P+    +V+LA+TG+AVA R  P +              S LIPGIGR+ 
Sbjct: 1   MADKTRSSFLPLISLLVVLLAITGQAVAGRSVPTKDDKKQPEWFIGHDGSYLIPGIGRVI 60

Query: 61  LSPY----------DKGSHGGGHSSSYGSNPAPKRQYIPGGDDNFIPNPGYEVPIPANIG 99
           + P           D GS G    S  G  P+    Y+PGGDD F+PNPGYEVP P N  
Sbjct: 61  VPPLHNVVPQTPFPDNGSTGSTGGSGSGGAPSTGHDYVPGGDDTFVPNPGYEVPNPGNGA 120

BLAST of MELO3C013561.jh1 vs. NCBI nr
Match: CAB4274401.1 (unnamed protein product [Prunus armeniaca])

HSP 1 Score: 77.0 bits (188), Expect = 1.76e-15
Identity = 49/125 (39.20%), Postives = 60/125 (48.00%), Query Frame = 0

Query: 1   MAHRITPSLFPIF---LVILAMTGEAVAARDFPERV-------------SVLIPGIGRIT 60
           MA +   S  P+    +V+LA+TG+AVA R  P +              S LIPGIGR+ 
Sbjct: 1   MADKTRSSFLPLISLLVVLLAITGQAVAGRSVPTKDDKKQPEWFIGHDGSYLIPGIGRVI 60

Query: 61  LSPY----------DKGSHGGGHSSSYGSNPAPKRQYIPGGDDNFIPNPGYEVPIPANIG 99
             P           D GS G    S  G  P+    Y+PGGDD F+PNPGYEVP P N  
Sbjct: 61  FPPLHNVVPQTPFPDNGSTGSTGGSGSGGAPSTGHDYVPGGDDTFVPNPGYEVPNPGNGA 120

BLAST of MELO3C013561.jh1 vs. ExPASy Swiss-Prot
Match: P47925 (Putative cell wall protein OS=Arabidopsis thaliana OX=3702 GN=At2g20870 PE=2 SV=2)

HSP 1 Score: 48.1 bits (113), Expect = 6.7e-05
Identity = 27/69 (39.13%), Postives = 33/69 (47.83%), Query Frame = 0

Query: 34  SVLIPGIGRITLSPYDKGSH------------GGGHSSSYGSNPAPKRQYIPGGDDNFIP 91
           ++LIPG+GR  L P  K               GGG  S  G   A     +PGGDD  +P
Sbjct: 54  TILIPGVGRFLLPPKCKKPFYPYNPVTGAPLTGGGIPSYNGGQGAGPHTQLPGGDDTLVP 113

BLAST of MELO3C013561.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BC54 (Putative cell wall protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold464G00120 PE=4 SV=1)

HSP 1 Score: 200 bits (509), Expect = 5.32e-65
Identity = 100/102 (98.04%), Postives = 100/102 (98.04%), Query Frame = 0

Query: 1   MAHRITPSLFPIFLVILAMTGEAVAARDFPERVSVLIPGIGRITLSPYDKGSHGGGHSSS 60
           MAHRITPSLFPIFLVILAMTGEAVAARDFPE  SVLIPGIGRITLSPYDKGSHGGGHSSS
Sbjct: 1   MAHRITPSLFPIFLVILAMTGEAVAARDFPE--SVLIPGIGRITLSPYDKGSHGGGHSSS 60

Query: 61  YGSNPAPKRQYIPGGDDNFIPNPGYEVPIPANIGGVKETSYP 102
           YGSNPAPKRQYIPGGDDNFIPNPGYEVPIPANIGGVKETSYP
Sbjct: 61  YGSNPAPKRQYIPGGDDNFIPNPGYEVPIPANIGGVKETSYP 100

BLAST of MELO3C013561.jh1 vs. ExPASy TrEMBL
Match: A0A6J1I1F6 (putative cell wall protein OS=Cucurbita maxima OX=3661 GN=LOC111469644 PE=4 SV=1)

HSP 1 Score: 144 bits (362), Expect = 2.50e-42
Identity = 77/119 (64.71%), Postives = 85/119 (71.43%), Query Frame = 0

Query: 1   MAHRITPSLFPIFLVILAMTGEAVAARDFPER-----------------VSVLIPGIGRI 60
           MA+R   SL   F+VILA+ GEAVAAR+  ER                 VSVLIPGIGR 
Sbjct: 1   MANRTIASLLATFIVILAIAGEAVAARNVHERSSIDDKKQPEWVAGHDGVSVLIPGIGRF 60

Query: 61  TLSPYDKGSHGGGHSSSYGSNPAPKRQYIPGGDDNFIPNPGYEVPIPANIGGVKETSYP 102
           TLSP+DKGS G G + SYGSNPAP+RQYIPGGDDNFIPNPG+EVPIPA I GVKET YP
Sbjct: 61  TLSPHDKGSSGEGQAGSYGSNPAPRRQYIPGGDDNFIPNPGFEVPIPAKISGVKETPYP 119

BLAST of MELO3C013561.jh1 vs. ExPASy TrEMBL
Match: A0A0A0KCX5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G124140 PE=4 SV=1)

HSP 1 Score: 142 bits (359), Expect = 3.15e-42
Identity = 78/102 (76.47%), Postives = 82/102 (80.39%), Query Frame = 0

Query: 1   MAHRITPSLFPIFLVILAMTGEAVAARDFPERVSVLIPGIGRITLSPYDKGSHGGGHSSS 60
           MAHRI PS+ PIFLVILAMTGEAVA       VSVLIPGIGR+TLS        GGHSSS
Sbjct: 1   MAHRIIPSMLPIFLVILAMTGEAVALCS---TVSVLIPGIGRLTLSR-------GGHSSS 60

Query: 61  YGSNPAPKRQYIPGGDDNFIPNPGYEVPIPANIGGVKETSYP 102
           YGSNPAP+RQYIPGGD NFIPNPGYEV I A+IGGVKETSYP
Sbjct: 61  YGSNPAPRRQYIPGGDGNFIPNPGYEVRITADIGGVKETSYP 92

BLAST of MELO3C013561.jh1 vs. ExPASy TrEMBL
Match: A0A6J1CFL0 (putative cell wall protein OS=Momordica charantia OX=3673 GN=LOC111011227 PE=4 SV=1)

HSP 1 Score: 124 bits (312), Expect = 1.02e-34
Identity = 72/120 (60.00%), Postives = 81/120 (67.50%), Query Frame = 0

Query: 1   MAHRITPSLFPIFLVI-LAMTGEAVAARDFPER-----------------VSVLIPGIGR 60
           MA+R   SL PI ++I LA+ GEA AAR+  E+                 VSVLIPGIGR
Sbjct: 1   MAYRTISSLLPILIIIILAVAGEAAAARNAREKSSIDDKKQPQWLVGYDGVSVLIPGIGR 60

Query: 61  ITLSPYDKGSHGGGHSSSYGSNPAPKRQYIPGGDDNFIPNPGYEVPIPANIGGVKETSYP 102
           ITL PYDKGS G  H+ SYGSNPA   QYIPGGDDNFIPNPG+EVP PANIG VK T +P
Sbjct: 61  ITLPPYDKGSFGE-HAGSYGSNPASSGQYIPGGDDNFIPNPGFEVPNPANIGVVKATPHP 119

BLAST of MELO3C013561.jh1 vs. ExPASy TrEMBL
Match: A0A6J5X0W5 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS22653 PE=4 SV=1)

HSP 1 Score: 77.4 bits (189), Expect = 6.02e-16
Identity = 49/125 (39.20%), Postives = 61/125 (48.80%), Query Frame = 0

Query: 1   MAHRITPSLFPIF---LVILAMTGEAVAARDFPERV-------------SVLIPGIGRIT 60
           MA +   S  P+    +V+LA+TG+AVA R  P +              S LIPGIGR+ 
Sbjct: 1   MADKTRSSFLPLISLLVVLLAITGQAVAGRSVPTKDDKKQPEWFIGHDGSYLIPGIGRVI 60

Query: 61  LSPY----------DKGSHGGGHSSSYGSNPAPKRQYIPGGDDNFIPNPGYEVPIPANIG 99
           + P           D GS G    S  G  P+    Y+PGGDD F+PNPGYEVP P N  
Sbjct: 61  VPPLHNVVPQTPFPDNGSTGSTGGSGSGGAPSTGHDYVPGGDDTFVPNPGYEVPNPGNGA 120

BLAST of MELO3C013561.jh1 vs. TAIR 10
Match: AT2G20870.1 (cell wall protein precursor, putative )

HSP 1 Score: 48.1 bits (113), Expect = 4.8e-06
Identity = 27/69 (39.13%), Postives = 33/69 (47.83%), Query Frame = 0

Query: 34  SVLIPGIGRITLSPYDKGSH------------GGGHSSSYGSNPAPKRQYIPGGDDNFIP 91
           ++LIPG+GR  L P  K               GGG  S  G   A     +PGGDD  +P
Sbjct: 54  TILIPGVGRFLLPPKCKKPFYPYNPVTGAPLTGGGIPSYNGGQGAGPHTQLPGGDDTLVP 113

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0065341.11.10e-6498.04putative cell wall protein [Cucumis melo var. makuwa] >TYJ96609.1 putative cell ... [more]
XP_022970746.15.16e-4264.71putative cell wall protein [Cucurbita maxima][more]
XP_022140620.12.11e-3460.00putative cell wall protein [Momordica charantia][more]
CAB4304874.11.24e-1539.20unnamed protein product [Prunus armeniaca][more]
CAB4274401.11.76e-1539.20unnamed protein product [Prunus armeniaca][more]
Match NameE-valueIdentityDescription
P479256.7e-0539.13Putative cell wall protein OS=Arabidopsis thaliana OX=3702 GN=At2g20870 PE=2 SV=... [more]
Match NameE-valueIdentityDescription
A0A5D3BC545.32e-6598.04Putative cell wall protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaff... [more]
A0A6J1I1F62.50e-4264.71putative cell wall protein OS=Cucurbita maxima OX=3661 GN=LOC111469644 PE=4 SV=1[more]
A0A0A0KCX53.15e-4276.47Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_6G124140 PE=4 SV=1[more]
A0A6J1CFL01.02e-3460.00putative cell wall protein OS=Momordica charantia OX=3673 GN=LOC111011227 PE=4 S... [more]
A0A6J5X0W56.02e-1639.20Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=ORAREDHAP_LOCUS22653 PE=... [more]
Match NameE-valueIdentityDescription
AT2G20870.14.8e-0639.13cell wall protein precursor, putative [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 46..77
IPR034565Putative cell wall proteinPANTHERPTHR36733CELL WALL PROTEIN-RELATEDcoord: 1..97

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C013561.jh1.t1MELO3C013561.jh1.t1mRNA