MELO3C013426 (gene) Melon (DHL92) v4

Overview


Name	MELO3C013426
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Activating signal cointegrator 1 complex subunit 1
Location	chr01: 16866217 .. 16866870 (+)
RNA-Seq Expression	MELO3C013426
Synteny	MELO3C013426

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGACTGGTAAAATGGAATTTAAGAGTGCTGCTGACCAGAATAAAAAGCGCAAAACAATCAGGCAAGCATGGAGACCAGTGTGTACCCACGCTTGTTCTTCTGAGGGTAGGTTGAATTTATATTGCAAAAGGATATAAGTATTAGTTGTATACTTTGGGACATCCAACAAGCTCTTAAAGTTACCAAGTATAAGTTCTTTTAATGTTAGCAAAAGGCATGGGAATTTGTTGTTCATCTTAAGCATAATAGTGAATAGCCCCCAACTGGATTAAAAATTTTATGATGATAGGTGTTACACACTAAACAGTCGAATTAATCATGTACCTAGGGGATTTATTTAGTGGGAGATAATTGTTCTTGATGTAGATTTGTCGGTTAAGGATGATAGAGTTGGGTCAAAGGATGGAAGTCAAGTTCAAGAAATGGACTGCATAATGCATTCCAGTATAGCTAGTGCTCAACCAGTAGAAGTAGTTGAAGAAATTAATGTCGTGACTGAGCTAAGTGTAAATGTTGATGGAGACACGAACTTGGAGGGTCAATCTGTGCCTTCTGGTGAGAAGTTTTCAGTGAAACTGAATGTAAGTGAGCATATCCGATTAAATGAACTGTTATCAAATATAGTCAATCGAGACTTCCTGTCAATTGATTGA

mRNA sequence

ATGACTGGTAAAATGGAATTTAAGAGTGCTGCTGACCAGAATAAAAAGCGCAAAACAATCAGGCAAGCATGGAGACCAGTGTGTACCCACGCTTGTTCTTCTGAGGATTTGTCGGTTAAGGATGATAGAGTTGGGTCAAAGGATGGAAGTCAAGTTCAAGAAATGGACTGCATAATGCATTCCAGTATAGCTAGTGCTCAACCAGTAGAAGTAGTTGAAGAAATTAATGTCGTGACTGAGCTAAGTGTAAATGTTGATGGAGACACGAACTTGGAGGGTCAATCTGTGCCTTCTGGTGAGAAGTTTTCAGTGAAACTGAATGTAAGTGAGCATATCCGATTAAATGAACTGTTATCAAATATAGTCAATCGAGACTTCCTGTCAATTGATTGA

Coding sequence (CDS)

ATGACTGGTAAAATGGAATTTAAGAGTGCTGCTGACCAGAATAAAAAGCGCAAAACAATCAGGCAAGCATGGAGACCAGTGTGTACCCACGCTTGTTCTTCTGAGGATTTGTCGGTTAAGGATGATAGAGTTGGGTCAAAGGATGGAAGTCAAGTTCAAGAAATGGACTGCATAATGCATTCCAGTATAGCTAGTGCTCAACCAGTAGAAGTAGTTGAAGAAATTAATGTCGTGACTGAGCTAAGTGTAAATGTTGATGGAGACACGAACTTGGAGGGTCAATCTGTGCCTTCTGGTGAGAAGTTTTCAGTGAAACTGAATGTAAGTGAGCATATCCGATTAAATGAACTGTTATCAAATATAGTCAATCGAGACTTCCTGTCAATTGATTGA

Protein sequence

MTGKMEFKSAADQNKKRKTIRQAWRPVCTHACSSEDLSVKDDRVGSKDGSQVQEMDCIMHSSIASAQPVEVVEEINVVTELSVNVDGDTNLEGQSVPSGEKFSVKLNVSEHIRLNELLSNIVNRDFLSID

Homology

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BLAST of MELO3C013426 vs. NCBI nr
Match: KAA0033771.1 (activating signal cointegrator 1 complex subunit 1 [Cucumis melo var. makuwa] >TYK22364.1 activating signal cointegrator 1 complex subunit 1 [Cucumis melo var. makuwa])

HSP 1 Score: 216.5 bits (550), Expect = 1.4e-52
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MTGKMEFKSAADQNKKRKTIRQAWRPVCTHACSSEDLSVKDDRVGSKDGSQVQEMDCIMH 60
           MTGKMEFKSAADQNKKRKTIRQAWRPVCTHACSSEDLSVKDDRV SKDGSQVQEMDCIMH
Sbjct: 1   MTGKMEFKSAADQNKKRKTIRQAWRPVCTHACSSEDLSVKDDRVESKDGSQVQEMDCIMH 60

Query: 61  SSIASAQPVEVVEEINVVTELSVNVDGDTNLEGQSVPSGEKFSVKLNVSEHI 113
           SSIASAQPVEVVEEINVVTELSVNVDGDTNLEGQSVPSGEKFSVKLNVSEHI
Sbjct: 61  SSIASAQPVEVVEEINVVTELSVNVDGDTNLEGQSVPSGEKFSVKLNVSEHI 112

[Close]

BLAST of MELO3C013426 vs. NCBI nr
Match: KAA0059318.1 (activating signal cointegrator 1 complex subunit 1 [Cucumis melo var. makuwa] >TYK04009.1 activating signal cointegrator 1 complex subunit 1 [Cucumis melo var. makuwa])

HSP 1 Score: 193.0 bits (489), Expect = 1.6e-45
Identity = 100/112 (89.29%), Postives = 102/112 (91.07%), Query Frame = 0


Query: 1   MTGKMEFKSAADQNKKRKTIRQAWRPVCTHACSSEDLSVKDDRVGSKDGSQVQEMDCIMH 60
           MTGK EFKSAADQ KKRKTI QAWRPVCTHACSSEDLSVKDDRV S+DGSQVQEMDC MH
Sbjct: 75  MTGKTEFKSAADQKKKRKTISQAWRPVCTHACSSEDLSVKDDRVESEDGSQVQEMDCRMH 134

Query: 61  SSIASAQPVEVVEEINVVTELSVNVDGDTNLEGQSVPSGEKFSVKLNVSEHI 113
           SS ASAQPVEVVEEINVVTELSVNV GDTNLEGQSVPSGEKFSVKLNV   +
Sbjct: 135 SSTASAQPVEVVEEINVVTELSVNVGGDTNLEGQSVPSGEKFSVKLNVGSSL 186

[Close]

BLAST of MELO3C013426 vs. NCBI nr
Match: XP_008462176.1 (PREDICTED: activating signal cointegrator 1 complex subunit 1 [Cucumis melo])

HSP 1 Score: 193.0 bits (489), Expect = 1.6e-45
Identity = 100/112 (89.29%), Postives = 102/112 (91.07%), Query Frame = 0


Query: 1   MTGKMEFKSAADQNKKRKTIRQAWRPVCTHACSSEDLSVKDDRVGSKDGSQVQEMDCIMH 60
           MTGK EFKSAADQ KKRKTI QAWRPVCTHACSSEDLSVKDDRV S+DGSQVQEMDC MH
Sbjct: 51  MTGKTEFKSAADQKKKRKTISQAWRPVCTHACSSEDLSVKDDRVESEDGSQVQEMDCRMH 110

Query: 61  SSIASAQPVEVVEEINVVTELSVNVDGDTNLEGQSVPSGEKFSVKLNVSEHI 113
           SS ASAQPVEVVEEINVVTELSVNV GDTNLEGQSVPSGEKFSVKLNV   +
Sbjct: 111 SSTASAQPVEVVEEINVVTELSVNVGGDTNLEGQSVPSGEKFSVKLNVGSSL 162

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BLAST of MELO3C013426 vs. NCBI nr
Match: XP_004141755.1 (activating signal cointegrator 1 complex subunit 1 isoform X2 [Cucumis sativus] >KAE8646472.1 hypothetical protein Csa_016081 [Cucumis sativus])

HSP 1 Score: 170.2 bits (430), Expect = 1.1e-38
Identity = 90/112 (80.36%), Postives = 97/112 (86.61%), Query Frame = 0


Query: 1   MTGKMEFKSAADQNKKRKTIRQAWRPVCTHACSSEDLSVKDDRVGSKDGSQVQEMDCIMH 60
           MTGK EF+SAADQ KKRKTI QAWRPVCTHAC SEDLSV+DDRV S+DGSQVQEMD  MH
Sbjct: 39  MTGKTEFRSAADQKKKRKTISQAWRPVCTHACPSEDLSVEDDRVESEDGSQVQEMDVRMH 98

Query: 61  SSIASAQPVEVVEEINVVTELSVNVDGDTNLEGQSVPSGEKFSVKLNVSEHI 113
           +S  SAQPVEV EEINVVTELSVN+ GDTNLEGQSV SGEKFSVKL+V   +
Sbjct: 99  TS-TSAQPVEVAEEINVVTELSVNMGGDTNLEGQSVTSGEKFSVKLDVGSSL 149

[Close]

BLAST of MELO3C013426 vs. NCBI nr
Match: XP_031745175.1 (activating signal cointegrator 1 complex subunit 1 isoform X3 [Cucumis sativus])

HSP 1 Score: 164.9 bits (416), Expect = 4.8e-37
Identity = 90/115 (78.26%), Postives = 97/115 (84.35%), Query Frame = 0


Query: 1   MTGKMEFKSAADQNKKRKTIRQAWRPVCTHACSSE---DLSVKDDRVGSKDGSQVQEMDC 60
           MTGK EF+SAADQ KKRKTI QAWRPVCTHAC SE   DLSV+DDRV S+DGSQVQEMD 
Sbjct: 1   MTGKTEFRSAADQKKKRKTISQAWRPVCTHACPSEGRLDLSVEDDRVESEDGSQVQEMDV 60

Query: 61  IMHSSIASAQPVEVVEEINVVTELSVNVDGDTNLEGQSVPSGEKFSVKLNVSEHI 113
            MH+S  SAQPVEV EEINVVTELSVN+ GDTNLEGQSV SGEKFSVKL+V   +
Sbjct: 61  RMHTS-TSAQPVEVAEEINVVTELSVNMGGDTNLEGQSVTSGEKFSVKLDVGSSL 114

[Close]

BLAST of MELO3C013426 vs. ExPASy TrEMBL
Match: A0A5D3DFJ4 (Activating signal cointegrator 1 complex subunit 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1428G00870 PE=4 SV=1)

HSP 1 Score: 216.5 bits (550), Expect = 6.7e-53
Identity = 111/112 (99.11%), Postives = 111/112 (99.11%), Query Frame = 0


Query: 1   MTGKMEFKSAADQNKKRKTIRQAWRPVCTHACSSEDLSVKDDRVGSKDGSQVQEMDCIMH 60
           MTGKMEFKSAADQNKKRKTIRQAWRPVCTHACSSEDLSVKDDRV SKDGSQVQEMDCIMH
Sbjct: 1   MTGKMEFKSAADQNKKRKTIRQAWRPVCTHACSSEDLSVKDDRVESKDGSQVQEMDCIMH 60

Query: 61  SSIASAQPVEVVEEINVVTELSVNVDGDTNLEGQSVPSGEKFSVKLNVSEHI 113
           SSIASAQPVEVVEEINVVTELSVNVDGDTNLEGQSVPSGEKFSVKLNVSEHI
Sbjct: 61  SSIASAQPVEVVEEINVVTELSVNVDGDTNLEGQSVPSGEKFSVKLNVSEHI 112

[Close]

BLAST of MELO3C013426 vs. ExPASy TrEMBL
Match: A0A5D3C0W5 (Activating signal cointegrator 1 complex subunit 1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold347G002070 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 8.0e-46
Identity = 100/112 (89.29%), Postives = 102/112 (91.07%), Query Frame = 0


Query: 1   MTGKMEFKSAADQNKKRKTIRQAWRPVCTHACSSEDLSVKDDRVGSKDGSQVQEMDCIMH 60
           MTGK EFKSAADQ KKRKTI QAWRPVCTHACSSEDLSVKDDRV S+DGSQVQEMDC MH
Sbjct: 75  MTGKTEFKSAADQKKKRKTISQAWRPVCTHACSSEDLSVKDDRVESEDGSQVQEMDCRMH 134

Query: 61  SSIASAQPVEVVEEINVVTELSVNVDGDTNLEGQSVPSGEKFSVKLNVSEHI 113
           SS ASAQPVEVVEEINVVTELSVNV GDTNLEGQSVPSGEKFSVKLNV   +
Sbjct: 135 SSTASAQPVEVVEEINVVTELSVNVGGDTNLEGQSVPSGEKFSVKLNVGSSL 186

[Close]

BLAST of MELO3C013426 vs. ExPASy TrEMBL
Match: A0A1S3CGC2 (activating signal cointegrator 1 complex subunit 1 OS=Cucumis melo OX=3656 GN=LOC103500600 PE=4 SV=1)

HSP 1 Score: 193.0 bits (489), Expect = 8.0e-46
Identity = 100/112 (89.29%), Postives = 102/112 (91.07%), Query Frame = 0


Query: 1   MTGKMEFKSAADQNKKRKTIRQAWRPVCTHACSSEDLSVKDDRVGSKDGSQVQEMDCIMH 60
           MTGK EFKSAADQ KKRKTI QAWRPVCTHACSSEDLSVKDDRV S+DGSQVQEMDC MH
Sbjct: 51  MTGKTEFKSAADQKKKRKTISQAWRPVCTHACSSEDLSVKDDRVESEDGSQVQEMDCRMH 110

Query: 61  SSIASAQPVEVVEEINVVTELSVNVDGDTNLEGQSVPSGEKFSVKLNVSEHI 113
           SS ASAQPVEVVEEINVVTELSVNV GDTNLEGQSVPSGEKFSVKLNV   +
Sbjct: 111 SSTASAQPVEVVEEINVVTELSVNVGGDTNLEGQSVPSGEKFSVKLNVGSSL 162

[Close]

BLAST of MELO3C013426 vs. ExPASy TrEMBL
Match: A0A0A0K963 (KH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G447090 PE=4 SV=1)

HSP 1 Score: 170.2 bits (430), Expect = 5.5e-39
Identity = 90/112 (80.36%), Postives = 97/112 (86.61%), Query Frame = 0


Query: 1   MTGKMEFKSAADQNKKRKTIRQAWRPVCTHACSSEDLSVKDDRVGSKDGSQVQEMDCIMH 60
           MTGK EF+SAADQ KKRKTI QAWRPVCTHAC SEDLSV+DDRV S+DGSQVQEMD  MH
Sbjct: 97  MTGKTEFRSAADQKKKRKTISQAWRPVCTHACPSEDLSVEDDRVESEDGSQVQEMDVRMH 156

Query: 61  SSIASAQPVEVVEEINVVTELSVNVDGDTNLEGQSVPSGEKFSVKLNVSEHI 113
           +S  SAQPVEV EEINVVTELSVN+ GDTNLEGQSV SGEKFSVKL+V   +
Sbjct: 157 TS-TSAQPVEVAEEINVVTELSVNMGGDTNLEGQSVTSGEKFSVKLDVGSSL 207

[Close]

BLAST of MELO3C013426 vs. ExPASy TrEMBL
Match: A0A6J1D7P1 (uncharacterized protein LOC111017681 isoform X1 OS=Momordica charantia OX=3673 GN=LOC111017681 PE=4 SV=1)

HSP 1 Score: 139.0 bits (349), Expect = 1.4e-29
Identity = 76/118 (64.41%), Postives = 89/118 (75.42%), Query Frame = 0


Query: 1   MTGKMEFKSAADQNKKRKTIRQAWRPVCTHACSSEDLSVKDDRVGSKDGSQVQEMDCIMH 60
           MTG+ EF+SAADQ KKRKTI QAWRPVCTHA  SEDLSVKD RV SKDG+Q+Q+MDC   
Sbjct: 39  MTGRKEFRSAADQKKKRKTISQAWRPVCTHASPSEDLSVKDGRVESKDGNQIQQMDC--- 98

Query: 61  SSIASAQPVEVVEEINVVTELSV------NVDGDTNLEGQSVPSGEKFSVKLNVSEHI 113
           SS+++ Q  EV EE  VVT+LSV      N  GDTN+EGQSV S EKFSVK++V   +
Sbjct: 99  SSVSAQQVTEVAEETKVVTDLSVGSSAFPNKSGDTNVEGQSVASSEKFSVKVDVGSSL 153

The following BLAST results are available for this feature:

BLAST of MELO3C013426 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0033771.1	1.4e-52	99.11	activating signal cointegrator 1 complex subunit 1 [Cucumis melo var. makuwa] >T...	[more]
KAA0059318.1	1.6e-45	89.29	activating signal cointegrator 1 complex subunit 1 [Cucumis melo var. makuwa] >T...	[more]
XP_008462176.1	1.6e-45	89.29	PREDICTED: activating signal cointegrator 1 complex subunit 1 [Cucumis melo]	[more]
XP_004141755.1	1.1e-38	80.36	activating signal cointegrator 1 complex subunit 1 isoform X2 [Cucumis sativus] ...	[more]
XP_031745175.1	4.8e-37	78.26	activating signal cointegrator 1 complex subunit 1 isoform X3 [Cucumis sativus]	[more]

BLAST of MELO3C013426 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C013426 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3DFJ4	6.7e-53	99.11	Activating signal cointegrator 1 complex subunit 1 OS=Cucumis melo var. makuwa O...	[more]
A0A5D3C0W5	8.0e-46	89.29	Activating signal cointegrator 1 complex subunit 1 OS=Cucumis melo var. makuwa O...	[more]
A0A1S3CGC2	8.0e-46	89.29	activating signal cointegrator 1 complex subunit 1 OS=Cucumis melo OX=3656 GN=LO...	[more]
A0A0A0K963	5.5e-39	80.36	KH domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G447090 PE=4 SV=...	[more]
A0A6J1D7P1	1.4e-29	64.41	uncharacterized protein LOC111017681 isoform X1 OS=Momordica charantia OX=3673 G...	[more]

BLAST of MELO3C013426 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C013426.1	MELO3C013426.1	mRNA