MELO3C013418.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C013418.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Descriptionepimerase family protein SDR39U1 homolog, chloroplastic-like
Locationchr01: 17172140 .. 17173755 (-)
RNA-Seq ExpressionMELO3C013418.jh1
SyntenyMELO3C013418.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
AGCCAAAATGATACCCTTCTTCATGATGTTCGCTGGAGGTCCTCTGGGATCTGGAAAACAATGGTAACACTCTATCTAGAACATGATTAACGCATATTTCATTTCAATTGAGCTAAGCACACTTTCAGTTATGAACCGAATAACTGTAGCCGGAAATCGAGTATCTTTCTTTCCAGTTTTTAAAATCTAATTTCAAAATTCCAAAATCTCAAAATCTTTATTATTATTATTATCATTACCATTATTGTTATTATTATTTTAAGTTTTTAACAATGAGAGTGAAAAGGTAATTGGAGAGTTGGAAGAGGAAAAAAAAATGTCAAAGGGATATTCGTATTTTCAACCTCTTCTCAAAATAAAAGAGTAGAAAAAGAAAAATAAACTTTTGTGTTTTTTCCCCCAAAAGAAAACATTTCTAGCCTTGACAATCCAATTTTAGGTTTTTCTTTTTGTGATAATTAATTAGCCCTGCTGAAGGTTCATTGGACCCTTTTTCTTCTTCTTAAAAGTAGTATTATAAAAATTGGTAACGCAGGTTTTCGTGGATTCATTTGGATGACATTGTGAACTTAATATATGAAGCTCTGATCAATCCATCTTATCATGGTTATACTTTCATTCTAACACACTCGCAGAATAAATACATTATAAACATAAACAACTAAAATACAATTTCAAGTACTGGCAAAATAATAACTAAGTTTAGGTTAATATTAGTTTTCATTAATTAGTTATTTTGACTATCAATCAGTACATAGTTTTGTAATGACCCTTTTGGTTTCGTTTTTGCATTTCTAGTATTGTTTTAAATCTAAGAAGCTGGTATAGGGTAATTTGTTAATTAAATTAAATAAAGGGCTCTTTGAAAAAAAAAAGCAAAAAGGCAAAGAAAAAAAAAACAAATATATATAATGAATTTCACTATTATTTGTAGGGACAATTTTATTGTATTTTATTATATTTGTAAATAATTTTGTCATTTAAAATAATTTTTATAATAATAATAATAATAATAGAAAACAGGGGTTATAAATGGAACAGCACCGAAGCCAGTTACGTTGGGTGAATTATGTAAAGGATTGGGAGCTGAGATGGGAAGACCTTCATGGCTCCCCCAGTACCTGACTTTGCTCTCAAAGCCATACTTGGATAAGGAGCTTCTGTGGTTCGTCACAATCCCACTCCTTACCCTTTCTTTTTCTTTTCTTTTTAAATACAAAATTCTATTTTTCCAAAGTTCGTCATTTTCCATTCTAAATTCATGTCCAATAGGGTTTTGGCAGGGCAAAGGGTGGTTCCTACCAGAGCCAAGGAATTGGGTTTTTCGTATAAGTACCCCTCTGTGAAGGACGCACTCAAGTCCATTCTTTCCTAAGCTCAATTATGAACAAAATTGGCCACAGCAATTGTTTCTTAATTGTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTTTGATGAAATTTTTTATTTAGTTGTGTTGTAAATTCGATTTTGGTATGAAATGGAATGATGCAAAGATTAAAATTGTAGTGTAGTGGAGAAGGAGAACAAATAATTGCTCATGATTTATAAATTTATGGACACAAAGCGAGGTGTAAGGCATGGCATGACTT

mRNA sequence

AGCCAAAATGATACCCTTCTTCATGATGTTCGCTGGAGGTCCTCTGGGATCTGGAAAACAATGGGGTTATAAATGGAACAGCACCGAAGCCAGTTACGTTGGGTGAATTATGTAAAGGATTGGGAGCTGAGATGGGAAGACCTTCATGGCTCCCCCAGTACCTGACTTTGCTCTCAAAGCCATACTTGGATAAGGAGCTTCTGTGGGTTTTGGCAGGGCAAAGGGTGGTTCCTACCAGAGCCAAGGAATTGGGTTTTTCGTATAAGTACCCCTCTGTGAAGGACGCACTCAAGTCCATTCTTTCCTAAGCTCAATTATGAACAAAATTGGCCACAGCAATTGTTTCTTAATTGTTTCTTTCTTTCTTTCTTTCTTTTTTTTTTTTTTTTGATGAAATTTTTTATTTAGTTGTGTTGTAAATTCGATTTTGGTATGAAATGGAATGATGCAAAGATTAAAATTGTAGTGTAGTGGAGAAGGAGAACAAATAATTGCTCATGATTTATAAATTTATGGACACAAAGCGAGGTGTAAGGCATGGCATGACTT

Coding sequence (CDS)

ATGGGAAGACCTTCATGGCTCCCCCAGTACCTGACTTTGCTCTCAAAGCCATACTTGGATAAGGAGCTTCTGTGGGTTTTGGCAGGGCAAAGGGTGGTTCCTACCAGAGCCAAGGAATTGGGTTTTTCGTATAAGTACCCCTCTGTGAAGGACGCACTCAAGTCCATTCTTTCCTAA

Protein sequence

MGRPSWLPQYLTLLSKPYLDKELLWVLAGQRVVPTRAKELGFSYKYPSVKDALKSILS
Homology
BLAST of MELO3C013418.jh1 vs. NCBI nr
Match: XP_008444867.1 (PREDICTED: epimerase family protein SDR39U1 homolog, chloroplastic-like [Cucumis melo])

HSP 1 Score: 75.9 bits (185), Expect = 2.44e-14
Identity = 42/58 (72.41%), Postives = 43/58 (74.14%), Query Frame = 0

Query: 1   MGRPSWLPQYLTLLSKPYLDKELLWVLAGQRVVPTRAKELGFSYKYPSVKDALKSILS 58
           MGRPSWLP       K  L +    VL GQRVVPTRAKELGFSYKYPSVKDALKSILS
Sbjct: 292 MGRPSWLPVP-DFALKAVLGEGASVVLEGQRVVPTRAKELGFSYKYPSVKDALKSILS 348

BLAST of MELO3C013418.jh1 vs. NCBI nr
Match: KAA0054046.1 (epimerase family protein SDR39U1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 3.35e-14
Identity = 42/58 (72.41%), Postives = 43/58 (74.14%), Query Frame = 0

Query: 1   MGRPSWLPQYLTLLSKPYLDKELLWVLAGQRVVPTRAKELGFSYKYPSVKDALKSILS 58
           MGRPSWLP       K  L +    VL GQRVVPTRAKELGFSYKYPSVKDALKSILS
Sbjct: 398 MGRPSWLPVP-DFALKAVLGEGASVVLEGQRVVPTRAKELGFSYKYPSVKDALKSILS 454

BLAST of MELO3C013418.jh1 vs. NCBI nr
Match: TYJ96877.1 (epimerase family protein SDR39U1-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 75.9 bits (185), Expect = 3.37e-14
Identity = 42/58 (72.41%), Postives = 43/58 (74.14%), Query Frame = 0

Query: 1   MGRPSWLPQYLTLLSKPYLDKELLWVLAGQRVVPTRAKELGFSYKYPSVKDALKSILS 58
           MGRPSWLP       K  L +    VL GQRVVPTRAKELGFSYKYPSVKDALKSILS
Sbjct: 404 MGRPSWLPVP-DFALKAVLGEGASVVLEGQRVVPTRAKELGFSYKYPSVKDALKSILS 460

BLAST of MELO3C013418.jh1 vs. NCBI nr
Match: XP_004148540.1 (epimerase family protein SDR39U1 homolog, chloroplastic isoform X2 [Cucumis sativus] >KGN43179.1 hypothetical protein Csa_020200 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 6.43e-14
Identity = 41/58 (70.69%), Postives = 43/58 (74.14%), Query Frame = 0

Query: 1   MGRPSWLPQYLTLLSKPYLDKELLWVLAGQRVVPTRAKELGFSYKYPSVKDALKSILS 58
           MGRPSWLP       K  L +    VL GQ+VVPTRAKELGFSYKYPSVKDALKSILS
Sbjct: 292 MGRPSWLPVP-DFALKAVLGEGASVVLEGQKVVPTRAKELGFSYKYPSVKDALKSILS 348

BLAST of MELO3C013418.jh1 vs. NCBI nr
Match: XP_011658559.1 (epimerase family protein SDR39U1 homolog, chloroplastic isoform X1 [Cucumis sativus])

HSP 1 Score: 74.7 bits (182), Expect = 8.65e-14
Identity = 41/58 (70.69%), Postives = 43/58 (74.14%), Query Frame = 0

Query: 1   MGRPSWLPQYLTLLSKPYLDKELLWVLAGQRVVPTRAKELGFSYKYPSVKDALKSILS 58
           MGRPSWLP       K  L +    VL GQ+VVPTRAKELGFSYKYPSVKDALKSILS
Sbjct: 404 MGRPSWLPVP-DFALKAVLGEGASVVLEGQKVVPTRAKELGFSYKYPSVKDALKSILS 460

BLAST of MELO3C013418.jh1 vs. ExPASy Swiss-Prot
Match: Q9SJU9 (Epimerase family protein SDR39U1 homolog, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=GC1 PE=2 SV=2)

HSP 1 Score: 55.8 bits (133), Expect = 1.8e-07
Identity = 29/57 (50.88%), Postives = 37/57 (64.91%), Query Frame = 0

Query: 1   MGRPSWLPQYLTLLSKPYLDKELLWVLAGQRVVPTRAKELGFSYKYPSVKDALKSIL 58
           + RPSWLP       K  L +    VL GQ+V+P RAKELGF +KY  VKDAL++I+
Sbjct: 291 LSRPSWLP-VPDFALKALLGEGATVVLEGQKVLPVRAKELGFEFKYKYVKDALRAIM 346

BLAST of MELO3C013418.jh1 vs. ExPASy TrEMBL
Match: A0A1S3BBD1 (epimerase family protein SDR39U1 homolog, chloroplastic-like OS=Cucumis melo OX=3656 GN=LOC103488077 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.18e-14
Identity = 42/58 (72.41%), Postives = 43/58 (74.14%), Query Frame = 0

Query: 1   MGRPSWLPQYLTLLSKPYLDKELLWVLAGQRVVPTRAKELGFSYKYPSVKDALKSILS 58
           MGRPSWLP       K  L +    VL GQRVVPTRAKELGFSYKYPSVKDALKSILS
Sbjct: 292 MGRPSWLPVP-DFALKAVLGEGASVVLEGQRVVPTRAKELGFSYKYPSVKDALKSILS 348

BLAST of MELO3C013418.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UID7 (Epimerase family protein SDR39U1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold318G001130 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.62e-14
Identity = 42/58 (72.41%), Postives = 43/58 (74.14%), Query Frame = 0

Query: 1   MGRPSWLPQYLTLLSKPYLDKELLWVLAGQRVVPTRAKELGFSYKYPSVKDALKSILS 58
           MGRPSWLP       K  L +    VL GQRVVPTRAKELGFSYKYPSVKDALKSILS
Sbjct: 398 MGRPSWLPVP-DFALKAVLGEGASVVLEGQRVVPTRAKELGFSYKYPSVKDALKSILS 454

BLAST of MELO3C013418.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BCM9 (Epimerase family protein SDR39U1-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold10G00360 PE=3 SV=1)

HSP 1 Score: 75.9 bits (185), Expect = 1.63e-14
Identity = 42/58 (72.41%), Postives = 43/58 (74.14%), Query Frame = 0

Query: 1   MGRPSWLPQYLTLLSKPYLDKELLWVLAGQRVVPTRAKELGFSYKYPSVKDALKSILS 58
           MGRPSWLP       K  L +    VL GQRVVPTRAKELGFSYKYPSVKDALKSILS
Sbjct: 404 MGRPSWLPVP-DFALKAVLGEGASVVLEGQRVVPTRAKELGFSYKYPSVKDALKSILS 460

BLAST of MELO3C013418.jh1 vs. ExPASy TrEMBL
Match: A0A0A0K2D2 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G006290 PE=3 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 3.11e-14
Identity = 41/58 (70.69%), Postives = 43/58 (74.14%), Query Frame = 0

Query: 1   MGRPSWLPQYLTLLSKPYLDKELLWVLAGQRVVPTRAKELGFSYKYPSVKDALKSILS 58
           MGRPSWLP       K  L +    VL GQ+VVPTRAKELGFSYKYPSVKDALKSILS
Sbjct: 292 MGRPSWLPVP-DFALKAVLGEGASVVLEGQKVVPTRAKELGFSYKYPSVKDALKSILS 348

BLAST of MELO3C013418.jh1 vs. ExPASy TrEMBL
Match: A0A6J1EGF9 (epimerase family protein SDR39U1 homolog, chloroplastic-like OS=Cucurbita moschata OX=3662 GN=LOC111432329 PE=3 SV=1)

HSP 1 Score: 70.5 bits (171), Expect = 1.07e-12
Identity = 39/58 (67.24%), Postives = 41/58 (70.69%), Query Frame = 0

Query: 1   MGRPSWLPQYLTLLSKPYLDKELLWVLAGQRVVPTRAKELGFSYKYPSVKDALKSILS 58
           MGRPSWLP       K  L      VL GQRVVP RAKELGFS+KYPSVKDALK+ILS
Sbjct: 292 MGRPSWLPVP-DFALKAVLGDGASVVLEGQRVVPARAKELGFSFKYPSVKDALKAILS 348

BLAST of MELO3C013418.jh1 vs. TAIR 10
Match: AT2G21280.1 (NAD(P)-binding Rossmann-fold superfamily protein )

HSP 1 Score: 55.8 bits (133), Expect = 1.3e-08
Identity = 29/57 (50.88%), Postives = 37/57 (64.91%), Query Frame = 0

Query: 1   MGRPSWLPQYLTLLSKPYLDKELLWVLAGQRVVPTRAKELGFSYKYPSVKDALKSIL 58
           + RPSWLP       K  L +    VL GQ+V+P RAKELGF +KY  VKDAL++I+
Sbjct: 291 LSRPSWLP-VPDFALKALLGEGATVVLEGQKVLPVRAKELGFEFKYKYVKDALRAIM 346

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
XP_008444867.12.44e-1472.41PREDICTED: epimerase family protein SDR39U1 homolog, chloroplastic-like [Cucumis... [more]
KAA0054046.13.35e-1472.41epimerase family protein SDR39U1-like protein [Cucumis melo var. makuwa][more]
TYJ96877.13.37e-1472.41epimerase family protein SDR39U1-like protein [Cucumis melo var. makuwa][more]
XP_004148540.16.43e-1470.69epimerase family protein SDR39U1 homolog, chloroplastic isoform X2 [Cucumis sati... [more]
XP_011658559.18.65e-1470.69epimerase family protein SDR39U1 homolog, chloroplastic isoform X1 [Cucumis sati... [more]
Match NameE-valueIdentityDescription
Q9SJU91.8e-0750.88Epimerase family protein SDR39U1 homolog, chloroplastic OS=Arabidopsis thaliana ... [more]
Match NameE-valueIdentityDescription
A0A1S3BBD11.18e-1472.41epimerase family protein SDR39U1 homolog, chloroplastic-like OS=Cucumis melo OX=... [more]
A0A5A7UID71.62e-1472.41Epimerase family protein SDR39U1-like protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A5D3BCM91.63e-1472.41Epimerase family protein SDR39U1-like protein OS=Cucumis melo var. makuwa OX=119... [more]
A0A0A0K2D23.11e-1470.69Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G006290 PE=3 SV=1[more]
A0A6J1EGF91.07e-1267.24epimerase family protein SDR39U1 homolog, chloroplastic-like OS=Cucurbita moscha... [more]
Match NameE-valueIdentityDescription
AT2G21280.11.3e-0850.88NAD(P)-binding Rossmann-fold superfamily protein [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR013549Domain of unknown function DUF1731PFAMPF08338DUF1731coord: 26..56
e-value: 2.4E-11
score: 43.3

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C013418.jh1.t1MELO3C013418.jh1.t1mRNA