MELO3C013412 (gene) Melon (DHL92) v4

Overview
NameMELO3C013412
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Locationchr01: 16625512 .. 16625787 (-)
RNA-Seq ExpressionMELO3C013412
SyntenyMELO3C013412
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: polypeptideexonCDS
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGGCGAAGGACCTCCTCAACAAATCCTTTCCCTATTACGACGAGCTTGCATATGTGTTCGAAAAGGATAAGGCCACAGGTCGCTTTGCAGAGACGTTCGTTGATGTCGAGTCTAATGAGCCTGTCGGGTATGAGGGGTTTGACATGCCGGATGGAAACGATATGGAGTTTCCATCCATGTACAGCCAGGGGATTGACATGTCTCAAGATGATGTACGCACATCACGACCTGCTCGCACGTTAGACGGTAGGCCCAGATCGAGCGGATCCAAGTGA

mRNA sequence

ATGGCGAAGGACCTCCTCAACAAATCCTTTCCCTATTACGACGAGCTTGCATATGTGTTCGAAAAGGATAAGGCCACAGGTCGCTTTGCAGAGACGTTCGTTGATGTCGAGTCTAATGAGCCTGTCGGCCAGGGGATTGACATGTCTCAAGATGATGTACGCACATCACGACCTGCTCGCACGTTAGACGGTAGGCCCAGATCGAGCGGATCCAAGTGA

Coding sequence (CDS)

ATGGCGAAGGACCTCCTCAACAAATCCTTTCCCTATTACGACGAGCTTGCATATGTGTTCGAAAAGGATAAGGCCACAGGTCGCTTTGCAGAGACGTTCGTTGATGTCGAGTCTAATGAGCCTGTCGGCCAGGGGATTGACATGTCTCAAGATGATGTACGCACATCACGACCTGCTCGCACGTTAGACGGTAGGCCCAGATCGAGCGGATCCAAGTGA

Protein sequence

MAKDLLNKSFPYYDELAYVFEKDKATGRFAETFVDVESNEPVGQGIDMSQDDVRTSRPARTLDGRPRSSGSK
Homology
BLAST of MELO3C013412 vs. NCBI nr
Match: KAA0049673.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 113.2 bits (282), Expect = 9.2e-22
Identity = 61/80 (76.25%), Postives = 61/80 (76.25%), Query Frame = 0

Query: 1   MAKDLLNKSFPYYDELAYVFEKDKATGRFAETFVDVESNEPVG----------------- 60
           MAKDLLNKSFPYYDELAYVFEKDKATGRFAETFVDVESNEPVG                 
Sbjct: 53  MAKDLLNKSFPYYDELAYVFEKDKATGRFAETFVDVESNEPVGYEGFDMPDGNDMEFPSM 112

Query: 61  --QGIDMSQDDVRTSRPART 62
             QGIDMSQDDVRTSRPART
Sbjct: 113 YSQGIDMSQDDVRTSRPART 132

BLAST of MELO3C013412 vs. NCBI nr
Match: KAA0025858.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 100.1 bits (248), Expect = 8.0e-18
Identity = 55/90 (61.11%), Postives = 60/90 (66.67%), Query Frame = 0

Query: 2   AKDLLNKSFPYYDELAYVFEKDKATGRFAETFVDVESNEPVG------------------ 61
           AK LLNK FPYYDEL YVF +D+ATGRFAETF DV SNEP G                  
Sbjct: 118 AKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVY 177

Query: 62  -QGIDMSQDDVRTSRPARTLDGRPRSSGSK 73
            QGID+SQDDVR SRP+R  +GR RSSGSK
Sbjct: 178 SQGIDLSQDDVRASRPSRASEGRTRSSGSK 207

BLAST of MELO3C013412 vs. NCBI nr
Match: KAA0035563.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 100.1 bits (248), Expect = 8.0e-18
Identity = 55/90 (61.11%), Postives = 60/90 (66.67%), Query Frame = 0

Query: 2   AKDLLNKSFPYYDELAYVFEKDKATGRFAETFVDVESNEPVG------------------ 61
           AK LLNKSFPYYDEL YVF  D+ATGRFAETF DV SNEP G                  
Sbjct: 88  AKGLLNKSFPYYDELTYVFGHDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFSSVY 147

Query: 62  -QGIDMSQDDVRTSRPARTLDGRPRSSGSK 73
            QG+D+SQDDVR SRP+R  +GR RSSGSK
Sbjct: 148 SQGVDISQDDVRASRPSRASEGRTRSSGSK 177

BLAST of MELO3C013412 vs. NCBI nr
Match: TYK30971.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 100.1 bits (248), Expect = 8.0e-18
Identity = 55/90 (61.11%), Postives = 60/90 (66.67%), Query Frame = 0

Query: 2  AKDLLNKSFPYYDELAYVFEKDKATGRFAETFVDVESNEPVG------------------ 61
          AK LLNKSFPYYDEL YVF  D+ATGRFAETF DV SNEP G                  
Sbjct: 9  AKGLLNKSFPYYDELTYVFGHDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFSSVY 68

Query: 62 -QGIDMSQDDVRTSRPARTLDGRPRSSGSK 73
           QG+D+SQDDVR SRP+R  +GR RSSGSK
Sbjct: 69 SQGVDISQDDVRASRPSRASEGRTRSSGSK 98

BLAST of MELO3C013412 vs. NCBI nr
Match: KAA0067987.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 99.4 bits (246), Expect = 1.4e-17
Identity = 54/90 (60.00%), Postives = 60/90 (66.67%), Query Frame = 0

Query: 2   AKDLLNKSFPYYDELAYVFEKDKATGRFAETFVDVESNEPVG------------------ 61
           AK L+NK FPYYDEL YVF +D+ATGRFAETF DV SNEP G                  
Sbjct: 91  AKGLMNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDKFDMGDGNKDFPSVY 150

Query: 62  -QGIDMSQDDVRTSRPARTLDGRPRSSGSK 73
            QGID+SQDDVR SRP+R  +GR RSSGSK
Sbjct: 151 SQGIDLSQDDVRASRPSRASEGRTRSSGSK 180

BLAST of MELO3C013412 vs. ExPASy TrEMBL
Match: A0A5A7U1E5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold76G00080 PE=4 SV=1)

HSP 1 Score: 113.2 bits (282), Expect = 4.4e-22
Identity = 61/80 (76.25%), Postives = 61/80 (76.25%), Query Frame = 0

Query: 1   MAKDLLNKSFPYYDELAYVFEKDKATGRFAETFVDVESNEPVG----------------- 60
           MAKDLLNKSFPYYDELAYVFEKDKATGRFAETFVDVESNEPVG                 
Sbjct: 53  MAKDLLNKSFPYYDELAYVFEKDKATGRFAETFVDVESNEPVGYEGFDMPDGNDMEFPSM 112

Query: 61  --QGIDMSQDDVRTSRPART 62
             QGIDMSQDDVRTSRPART
Sbjct: 113 YSQGIDMSQDDVRTSRPART 132

BLAST of MELO3C013412 vs. ExPASy TrEMBL
Match: A0A5D3E5U2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold455G001980 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.9e-18
Identity = 55/90 (61.11%), Postives = 60/90 (66.67%), Query Frame = 0

Query: 2  AKDLLNKSFPYYDELAYVFEKDKATGRFAETFVDVESNEPVG------------------ 61
          AK LLNKSFPYYDEL YVF  D+ATGRFAETF DV SNEP G                  
Sbjct: 9  AKGLLNKSFPYYDELTYVFGHDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFSSVY 68

Query: 62 -QGIDMSQDDVRTSRPARTLDGRPRSSGSK 73
           QG+D+SQDDVR SRP+R  +GR RSSGSK
Sbjct: 69 SQGVDISQDDVRASRPSRASEGRTRSSGSK 98

BLAST of MELO3C013412 vs. ExPASy TrEMBL
Match: A0A5A7SYB2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold285G002330 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.9e-18
Identity = 55/90 (61.11%), Postives = 60/90 (66.67%), Query Frame = 0

Query: 2   AKDLLNKSFPYYDELAYVFEKDKATGRFAETFVDVESNEPVG------------------ 61
           AK LLNKSFPYYDEL YVF  D+ATGRFAETF DV SNEP G                  
Sbjct: 88  AKGLLNKSFPYYDELTYVFGHDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFSSVY 147

Query: 62  -QGIDMSQDDVRTSRPARTLDGRPRSSGSK 73
            QG+D+SQDDVR SRP+R  +GR RSSGSK
Sbjct: 148 SQGVDISQDDVRASRPSRASEGRTRSSGSK 177

BLAST of MELO3C013412 vs. ExPASy TrEMBL
Match: A0A5A7SI64 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold34G001320 PE=4 SV=1)

HSP 1 Score: 100.1 bits (248), Expect = 3.9e-18
Identity = 55/90 (61.11%), Postives = 60/90 (66.67%), Query Frame = 0

Query: 2   AKDLLNKSFPYYDELAYVFEKDKATGRFAETFVDVESNEPVG------------------ 61
           AK LLNK FPYYDEL YVF +D+ATGRFAETF DV SNEP G                  
Sbjct: 118 AKGLLNKPFPYYDELTYVFGRDRATGRFAETFADVGSNEPGGGYDRFDMGDGNEDFPPVY 177

Query: 62  -QGIDMSQDDVRTSRPARTLDGRPRSSGSK 73
            QGID+SQDDVR SRP+R  +GR RSSGSK
Sbjct: 178 SQGIDLSQDDVRASRPSRASEGRTRSSGSK 207

BLAST of MELO3C013412 vs. ExPASy TrEMBL
Match: A0A5D3E2S0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold575G00440 PE=4 SV=1)

HSP 1 Score: 99.4 bits (246), Expect = 6.6e-18
Identity = 53/88 (60.23%), Postives = 61/88 (69.32%), Query Frame = 0

Query: 3   KDLLNKSFPYYDELAYVFEKDKATGRFAETFVDVESNEPVG------------------Q 62
           K LLNK FPY+D+L YVF++DKATGRFAETFVDV SNEP G                  Q
Sbjct: 69  KGLLNKPFPYFDKLTYVFDRDKATGRFAETFVDVGSNEPGGYNRFDMGDGNEEFPPVYSQ 128

Query: 63  GIDMSQDDVRTSRPARTLDGRPRSSGSK 73
           GID+SQDD+R SRP+R L+GR  SSGSK
Sbjct: 129 GIDLSQDDIRASRPSRALEGRTGSSGSK 156

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0049673.19.2e-2276.25retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0025858.18.0e-1861.11retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0035563.18.0e-1861.11retrotransposon protein [Cucumis melo var. makuwa][more]
TYK30971.18.0e-1861.11retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0067987.11.4e-1760.00retrotransposon protein [Cucumis melo var. makuwa][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7U1E54.4e-2276.25Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3E5U23.9e-1861.11Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SYB23.9e-1861.11Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5A7SI643.9e-1861.11Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3E2S06.6e-1860.23Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 39..72

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C013412.1MELO3C013412.1mRNA