MELO3C013395 (gene) Melon (DHL92) v4

Overview
NameMELO3C013395
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionTy1-copia retrotransposon protein
Locationchr01: 16390527 .. 16390793 (+)
RNA-Seq ExpressionMELO3C013395
SyntenyMELO3C013395
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCCTCAAGAGTGGGCCCTTTATCGCCAAGTGTCCGACGTGGCAACGTTCAGTATTGTCGACGTACATGTGAACGTCGGCAATAATGTTAGGCTGACGCATTCACCGAACATCGGGTTTGGCTTCACCCCAATGTTTCAAGATGGTCGGCGAAACCTACGTCGGCATAAGCATATTGCTGACGTCATCTGGTTTTGCATCGGTTTTGCTTATTCCGACACAGTACTGCCGACACCCTCCCCAACGTGCCTCTATGCGTCGGGATAG

mRNA sequence

ATGCCTCAAGAGTGGGCCCTTTATCGCCAAGTGTCCGACGTGGCAACGTTCAGTATTGTCGACGTACATGTGAACGTCGGCAATAATGTTAGGCTGACGCATTCACCGAACATCGGGTTTGGCTTCACCCCAATGTTTCAAGATGGTCGGCGAAACCTACGTCGGCATAAGCATATTGCTGACGTCATCTGGTTTTGCATCGGTTTTGCTTATTCCGACACAGTACTGCCGACACCCTCCCCAACGTGCCTCTATGCGTCGGGATAG

Coding sequence (CDS)

ATGCCTCAAGAGTGGGCCCTTTATCGCCAAGTGTCCGACGTGGCAACGTTCAGTATTGTCGACGTACATGTGAACGTCGGCAATAATGTTAGGCTGACGCATTCACCGAACATCGGGTTTGGCTTCACCCCAATGTTTCAAGATGGTCGGCGAAACCTACGTCGGCATAAGCATATTGCTGACGTCATCTGGTTTTGCATCGGTTTTGCTTATTCCGACACAGTACTGCCGACACCCTCCCCAACGTGCCTCTATGCGTCGGGATAG

Protein sequence

MPQEWALYRQVSDVATFSIVDVHVNVGNNVRLTHSPNIGFGFTPMFQDGRRNLRRHKHIADVIWFCIGFAYSDTVLPTPSPTCLYASG
Homology
[Close]
BLAST of MELO3C013395 vs. NCBI nr
Match: KAA0049696.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 145.6 bits (366), Expect = 2.0e-31
Identity = 65/74 (87.84%), Postives = 69/74 (93.24%), Query Frame = 0 

Query: 1  MPQEWALYRQVSDVATFSIVDVHVNVGNNVRLTHSPNIGFGFTPMFQDGRRNLRRHKHIA 60
          M +EW LYRQVS+VATF IVDVHVNVGNNVRLTHSPN+GFGFTPMFQDGRRNLRRHKHIA
Sbjct: 1  MLREWTLYRQVSNVATFIIVDVHVNVGNNVRLTHSPNVGFGFTPMFQDGRRNLRRHKHIA 60

Query: 61 DVIWFCIGFAYSDT 75
          DVIWF +GF YSDT
Sbjct: 61 DVIWFRVGFPYSDT 74

[Close]
BLAST of MELO3C013395 vs. ExPASy TrEMBL
Match: A0A5A7U6B5 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold76G00400 PE=4 SV=1)

HSP 1 Score: 145.6 bits (366), Expect = 9.9e-32
Identity = 65/74 (87.84%), Postives = 69/74 (93.24%), Query Frame = 0 

Query: 1  MPQEWALYRQVSDVATFSIVDVHVNVGNNVRLTHSPNIGFGFTPMFQDGRRNLRRHKHIA 60
          M +EW LYRQVS+VATF IVDVHVNVGNNVRLTHSPN+GFGFTPMFQDGRRNLRRHKHIA
Sbjct: 1  MLREWTLYRQVSNVATFIIVDVHVNVGNNVRLTHSPNVGFGFTPMFQDGRRNLRRHKHIA 60

Query: 61 DVIWFCIGFAYSDT 75
          DVIWF +GF YSDT
Sbjct: 61 DVIWFRVGFPYSDT 74

The following BLAST results are available for this feature:
BLAST of MELO3C013395 vs. NCBI nr
Match NameE-valueIdentityDescription
KAA0049696.12.0e-3187.84ty1-copia retrotransposon protein [Cucumis melo var. makuwa][more]
BLAST of MELO3C013395 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C013395 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7U6B59.9e-3287.84Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... [more]
BLAST of MELO3C013395 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C013395.1MELO3C013395.1mRNA