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Sequences
The following sequences are available for this feature:
Gene sequence (with intron) Legend: exonCDSpolypeptide Hold the cursor over a type above to highlight its positions in the sequence below. ATGCCTCAAGAGTGGGCCCTTTATCGCCAAGTGTCCGACGTGGCAACGTTCAGTATTGTCGACGTACATGTGAACGTCGGCAATAATGTTAGGCTGACGCATTCACCGAACATCGGGTTTGGCTTCACCCCAATGTTTCAAGATGGTCGGCGAAACCTACGTCGGCATAAGCATATTGCTGACGTCATCTGGTTTTGCATCGGTTTTGCTTATTCCGACACAGTACTGCCGACACCCTCCCCAACGTGCCTCTATGCGTCGGGATAG mRNA sequence ATGCCTCAAGAGTGGGCCCTTTATCGCCAAGTGTCCGACGTGGCAACGTTCAGTATTGTCGACGTACATGTGAACGTCGGCAATAATGTTAGGCTGACGCATTCACCGAACATCGGGTTTGGCTTCACCCCAATGTTTCAAGATGGTCGGCGAAACCTACGTCGGCATAAGCATATTGCTGACGTCATCTGGTTTTGCATCGGTTTTGCTTATTCCGACACAGTACTGCCGACACCCTCCCCAACGTGCCTCTATGCGTCGGGATAG Coding sequence (CDS) ATGCCTCAAGAGTGGGCCCTTTATCGCCAAGTGTCCGACGTGGCAACGTTCAGTATTGTCGACGTACATGTGAACGTCGGCAATAATGTTAGGCTGACGCATTCACCGAACATCGGGTTTGGCTTCACCCCAATGTTTCAAGATGGTCGGCGAAACCTACGTCGGCATAAGCATATTGCTGACGTCATCTGGTTTTGCATCGGTTTTGCTTATTCCGACACAGTACTGCCGACACCCTCCCCAACGTGCCTCTATGCGTCGGGATAG Protein sequence MPQEWALYRQVSDVATFSIVDVHVNVGNNVRLTHSPNIGFGFTPMFQDGRRNLRRHKHIADVIWFCIGFAYSDTVLPTPSPTCLYASG
Homology
BLAST of MELO3C013395 vs. NCBI nr
Match: KAA0049696.1 (ty1-copia retrotransposon protein [Cucumis melo var. makuwa]) HSP 1 Score: 145.6 bits (366), Expect = 2.0e-31 Identity = 65/74 (87.84%), Postives = 69/74 (93.24%), Query Frame = 0
Query: 1 MPQEWALYRQVSDVATFSIVDVHVNVGNNVRLTHSPNIGFGFTPMFQDGRRNLRRHKHIA 60
M +EW LYRQVS+VATF IVDVHVNVGNNVRLTHSPN+GFGFTPMFQDGRRNLRRHKHIA
Sbjct: 1 MLREWTLYRQVSNVATFIIVDVHVNVGNNVRLTHSPNVGFGFTPMFQDGRRNLRRHKHIA 60
Query: 61 DVIWFCIGFAYSDT 75
DVIWF +GF YSDT
Sbjct: 61 DVIWFRVGFPYSDT 74
BLAST of MELO3C013395 vs. ExPASy TrEMBL
Match: A0A5A7U6B5 (Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold76G00400 PE=4 SV=1) HSP 1 Score: 145.6 bits (366), Expect = 9.9e-32 Identity = 65/74 (87.84%), Postives = 69/74 (93.24%), Query Frame = 0
Query: 1 MPQEWALYRQVSDVATFSIVDVHVNVGNNVRLTHSPNIGFGFTPMFQDGRRNLRRHKHIA 60
M +EW LYRQVS+VATF IVDVHVNVGNNVRLTHSPN+GFGFTPMFQDGRRNLRRHKHIA
Sbjct: 1 MLREWTLYRQVSNVATFIIVDVHVNVGNNVRLTHSPNVGFGFTPMFQDGRRNLRRHKHIA 60
Query: 61 DVIWFCIGFAYSDT 75
DVIWF +GF YSDT
Sbjct: 61 DVIWFRVGFPYSDT 74
The following BLAST results are available for this feature:
| Match Name | E-value | Identity | Description | |
|---|
| KAA0049696.1 | 2.0e-31 | 87.84 | ty1-copia retrotransposon protein [Cucumis melo var. makuwa] | [more] |
| Match Name | E-value | Identity | Description | |
|---|
| Match Name | E-value | Identity | Description | |
|---|
| A0A5A7U6B5 | 9.9e-32 | 87.84 | Ty1-copia retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C2... | [more] |
| Match Name | E-value | Identity | Description | |
|---|
Relationships
The following mRNA feature(s) are a part of this gene:
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