MELO3C013368 (gene) Melon (DHL92) v4

Overview


Name	MELO3C013368
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	glycine-rich protein 2-like
Location	chr01: 16131685 .. 16132748 (-)
RNA-Seq Expression	MELO3C013368
Synteny	MELO3C013368

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

GGTTCAGTGACCAGAAGGGTTATGGCTTCATTTCCCCCAACGATGGTGGTGAAGATCTTTTCGTTCATCAATCCTCCATCAGATCCGACGGTTTCCGGAGCCTTGGTGTTGGTGAGGATGTTGAGTTTCTGATCGAGGCTGAGTCTGATGGCCGTTCCAAGGCTGTTGATGTCACTGGCCCAGGTGAAGCTTCTGTGCAGGGAAGTCGCGGCGGCGGAGGAGGCGGCGGCGGCGGAGGTGGAGGTGGCTACTCCAGTGGAGGTGGTTATGGAGGAGGAGGCGGTGGTGGAAGGGGGAGACGTGGTGGTGGTGGATATGGGTTTAACGGTGGAAGTGGCGGTGGTGGCCGAGGTGGGTACGGCGGTGGTGGAGGCGGGTATGGTGGTGGGGGTTATGGAGGCGGTGGCGGCGGCGGAGGTGGTGCTTGTTTCAAGTGTGGTGAGACTGGCCATATGGCGAGGGACTGCTACCAGAGTGGATCTCAAGGCGGTGGTGATAGGTACGGCGGAGGCGGCGGTGGTGGAAACTGCTATAGCTGTGGTGAATCTGGGCATTTCGCTAGAGAATGTCCAAGCAGTGGTCGTTGATCCTCGCGTAAATTGGTGACTAGCAAGTCAATTTACTTTTGTTTGCTTCAATCTGGGGGTGTTTTGTTCGGTTTTTCTTTTCCTTTCTATCTCAGTTTTGATCTACTGAGATCTGTAAGGTCATCTTTTAATAGGATTTGAGTAGTAGCCTTTTTCTCTTTTTTGTCATCTATGGATTTCCAATCAGTTTAGTATCTATCTTTTGGTTGTTGGGTGTTGATGATTATGTTTGTTTGATGGATTTTAGGGTATTTTATCAGCTATCCTTAGAAAAAGAGATGATCTATGGAGGAGAGATGACTACCTTCCTTTGATTTCTCTGTTTCTTTAACTGTTGATACAAGTATTTTCATATACAATGCCTTCTGGTTTTCAATGAATGAATGGATCCATCTCTGATTTCTTCTGTAACTACACGACTTAAAATCCTTTTTCTTTCCAGTTAATTTCAATTGAAAATATCTCTCTTGATTGAAT

mRNA sequence

GGTTCAGTGACCAGAAGGGTTATGGCTTCATTTCCCCCAACGATGGTGGTGAAGATCTTTTCGTTCATCAATCCTCCATCAGATCCGACGGTTTCCGGAGCCTTGGTGTTGGTGAGGATGTTGAGTTTCTGATCGAGGCTGAGTCTGATGGCCGTTCCAAGGCTGTTGATGTCACTGGCCCAGGTGAAGCTTCTGTGCAGGGAAGTCGCGGCGGCGGAGGAGGCGGCGGCGGCGGAGGTGGAGGTGGCTACTCCAGTGGAGGTGGTGCTTGTTTCAAGTGTGGTGAGACTGGCCATATGGCGAGGGACTGCTACCAGAGTGGATCTCAAGGCGGTGGTGATAGGTACGGCGGAGGCGGCGGTGGTGGAAACTGCTATAGCTGTGGTGAATCTGGGCATTTCGCTAGAGAATGTCCAAGCAGTGGTCGTTGATCCTCGCGTAAATTGGTGACTAGCAAGTCAATTTACTTTTGTTTGCTTCAATCTGGGGGTGTTTTGTTCGGTTTTTCTTTTCCTTTCTATCTCAGTTTTGATCTACTGAGATCTGTAAGGTCATCTTTTAATAGGATTTGAGTAGTAGCCTTTTTCTCTTTTTTGTCATCTATGGATTTCCAATCAGTTTAGTATCTATCTTTTGGTTGTTGGGTGTTGATGATTATGTTTGTTTGATGGATTTTAGGGTATTTTATCAGCTATCCTTAGAAAAAGAGATGATCTATGGAGGAGAGATGACTACCTTCCTTTGATTTCTCTGTTTCTTTAACTGTTGATACAAGTATTTTCATATACAATGCCTTCTGGTTTTCAATGAATGAATGGATCCATCTCTGATTTCTTCTGTAACTACACGACTTAAAATCCTTTTTCTTTCCAGTTAATTTCAATTGAAAATATCTCTCTTGATTGAAT

Coding sequence (CDS)

TTCAGTGACCAGAAGGGTTATGGCTTCATTTCCCCCAACGATGGTGGTGAAGATCTTTTCGTTCATCAATCCTCCATCAGATCCGACGGTTTCCGGAGCCTTGGTGTTGGTGAGGATGTTGAGTTTCTGATCGAGGCTGAGTCTGATGGCCGTTCCAAGGCTGTTGATGTCACTGGCCCAGGTGAAGCTTCTGTGCAGGGAAGTCGCGGCGGCGGAGGAGGCGGCGGCGGCGGAGGTGGAGGTGGCTACTCCAGTGGAGGTGGTGCTTGTTTCAAGTGTGGTGAGACTGGCCATATGGCGAGGGACTGCTACCAGAGTGGATCTCAAGGCGGTGGTGATAGGTACGGCGGAGGCGGCGGTGGTGGAAACTGCTATAGCTGTGGTGAATCTGGGCATTTCGCTAGAGAATGTCCAAGCAGTGGTCGTTGA

Protein sequence

FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGPGEASVQGSRGGGGGGGGGGGGGYSSGGGACFKCGETGHMARDCYQSGSQGGGDRYGGGGGGGNCYSCGESGHFARECPSSGR

Homology

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BLAST of MELO3C013368 vs. NCBI nr
Match: XP_008448117.2 (PREDICTED: LOW QUALITY PROTEIN: glycine-rich protein 2-like, partial [Cucumis melo])

HSP 1 Score: 247.7 bits (631), Expect = 6.1e-62
Identity = 142/194 (73.20%), Postives = 142/194 (73.20%), Query Frame = 0


Query: 1   FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP 60
           FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP
Sbjct: 1   FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP 60

Query: 61  GEASVQGSRGGGGGGGGGGGGGYSS----------------------------------- 120
           GEASVQGSRGGGGGGGGGGGGGYSS                                   
Sbjct: 61  GEASVQGSRGGGGGGGGGGGGGYSSGGGYGGGGGGGRGXRGGGGYGFNGGSGGGGRGGYG 120

Query: 121 -----------------GGGACFKCGETGHMARDCYQSGSQGGGDRYGGGGGGGNCYSCG 143
                            GGGACFKCGETGHMARDCYQSGSQGGGDRYGGGGGGGNCYSCG
Sbjct: 121 GGGGGYGGGGYGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRYGGGGGGGNCYSCG 180

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BLAST of MELO3C013368 vs. NCBI nr
Match: XP_038888820.1 (glycine-rich protein 2-like [Benincasa hispida])

HSP 1 Score: 234.6 bits (597), Expect = 5.4e-58
Identity = 138/193 (71.50%), Postives = 138/193 (71.50%), Query Frame = 0


Query: 1   FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP 60
           FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP
Sbjct: 12  FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP 71

Query: 61  GEASVQGSRGGGGGGGGG------------------------------------------ 120
           GEASVQGSRGGG GGGGG                                          
Sbjct: 72  GEASVQGSRGGGSGGGGGYSSGGGGYGGGGGGGRGRRGGGGYGFNGGSGGGGRGGYGGGG 131

Query: 121 --------GGGGYSSGGGACFKCGETGHMARDCYQSGSQGGGDRY-GGGGGGGNCYSCGE 143
                   GGGG   GGGACFKCGETGHMARDCYQSGSQGGGDRY GGGGGGGNCYSCGE
Sbjct: 132 GGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRYGGGGGGGGNCYSCGE 191

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BLAST of MELO3C013368 vs. NCBI nr
Match: XP_011658593.1 (glycine-rich protein 2 [Cucumis sativus] >KGN43237.1 hypothetical protein Csa_020571 [Cucumis sativus])

HSP 1 Score: 232.3 bits (591), Expect = 2.7e-57
Identity = 142/201 (70.65%), Postives = 142/201 (70.65%), Query Frame = 0


Query: 1   FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP 60
           FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP
Sbjct: 12  FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP 71

Query: 61  GEASVQGSRGGGGGGGG-GGGGGYSS---------------------------------- 120
           GEASVQGSRGGGGGGGG GGGGGYSS                                  
Sbjct: 72  GEASVQGSRGGGGGGGGAGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFNGGSGGGGRGGY 131

Query: 121 -------------------GGGACFKCGETGHMARDCYQSGSQ-GGGDRY----GGGGGG 143
                              GGGACFKCGETGHMARDCYQSGSQ GGGDRY    GGGGGG
Sbjct: 132 GGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGGDRYGGGGGGGGGG 191

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BLAST of MELO3C013368 vs. NCBI nr
Match: XP_022928350.1 (glycine-rich protein 2-like [Cucurbita moschata] >KAG6589006.1 Cold shock domain-containing protein 4, partial [Cucurbita argyrosperma subsp. sororia] >KAG7015270.1 Cold shock domain-containing protein 4, partial [Cucurbita argyrosperma subsp. argyrosperma])

HSP 1 Score: 227.6 bits (579), Expect = 6.6e-56
Identity = 134/191 (70.16%), Postives = 138/191 (72.25%), Query Frame = 0


Query: 1   FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP 60
           FSDQKGYGFISPN+GGEDLFVHQSSIRS+GFRSLGVGEDVEF IEAE+DGRSKAVDVTGP
Sbjct: 12  FSDQKGYGFISPNEGGEDLFVHQSSIRSEGFRSLGVGEDVEFQIEAEADGRSKAVDVTGP 71

Query: 61  GEASVQGSRGGGGGG----GGGGGGGY--------------------------------- 120
           GE+SVQGSRGGGGGG    GGGGGGGY                                 
Sbjct: 72  GESSVQGSRGGGGGGGGSYGGGGGGGYGGGGGGRGRRGGYGFNGGSGGGGRGSYGGSGGG 131

Query: 121 ----------SSGGGACFKCGETGHMARDCYQSGSQGGGDRY--GGGGGGGNCYSCGESG 143
                       GGGACFKCGE GHMARDCYQSGSQGGGDRY  GGGGGGGNCYSCGESG
Sbjct: 132 GYGGGYGSGGGGGGGACFKCGEAGHMARDCYQSGSQGGGDRYSGGGGGGGGNCYSCGESG 191

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BLAST of MELO3C013368 vs. NCBI nr
Match: XP_023529790.1 (glycine-rich protein 2-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 227.6 bits (579), Expect = 6.6e-56
Identity = 134/191 (70.16%), Postives = 138/191 (72.25%), Query Frame = 0


Query: 1   FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP 60
           FSDQKGYGFISPN+GGEDLFVHQSSIRS+GFRSLGVGEDVEF IEAE+DGRSKAVDVTGP
Sbjct: 12  FSDQKGYGFISPNEGGEDLFVHQSSIRSEGFRSLGVGEDVEFQIEAEADGRSKAVDVTGP 71

Query: 61  GEASVQGSRGGGGGG----GGGGGGGY--------------------------------- 120
           GE+SVQGSRGGGGGG    GGGGGGGY                                 
Sbjct: 72  GESSVQGSRGGGGGGGGTYGGGGGGGYGGGGGGRGRRGGYGFNGGSGGGGRGSYGGSGGG 131

Query: 121 ----------SSGGGACFKCGETGHMARDCYQSGSQGGGDRY--GGGGGGGNCYSCGESG 143
                       GGGACFKCGE GHMARDCYQSGSQGGGDRY  GGGGGGGNCYSCGESG
Sbjct: 132 GYGGGYGSGGGGGGGACFKCGEAGHMARDCYQSGSQGGGDRYSGGGGGGGGNCYSCGESG 191

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BLAST of MELO3C013368 vs. ExPASy Swiss-Prot
Match: P27484 (Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1)

HSP 1 Score: 174.9 bits (442), Expect = 6.6e-43
Identity = 108/199 (54.27%), Postives = 118/199 (59.30%), Query Frame = 0


Query: 1   FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP 60
           FSDQKG+GFI+P+DGGEDLFVHQS IRS+GFRSL  GE VEF +E+  DGR+KAVDVTGP
Sbjct: 16  FSDQKGFGFITPDDGGEDLFVHQSGIRSEGFRSLAEGETVEFEVESGGDGRTKAVDVTGP 75

Query: 61  GEASVQGSRGGGGGGGGGGGGGY------------------------------------- 120
             A+VQG RGGGGGGGG GGGGY                                     
Sbjct: 76  DGAAVQGGRGGGGGGGGRGGGGYGGGSGGYGGGGRGGSRGYGGGDGGYGGGGGYGGGSRY 135

Query: 121 -----------------SSGGGACFKCGETGHMARDCYQSGSQGGGDRY---GGGGGGGN 143
                            S GG  CFKCGE+GH ARDC QSG  GGG R+   GGGGGGG 
Sbjct: 136 GGGGGGYGGGGGYGGGGSGGGSGCFKCGESGHFARDCSQSGGGGGGGRFGGGGGGGGGGG 195

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BLAST of MELO3C013368 vs. ExPASy Swiss-Prot
Match: Q41188 (Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 3.5e-36
Identity = 98/186 (52.69%), Postives = 114/186 (61.29%), Query Frame = 0


Query: 1   FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP 60
           F  QKG+GFI+P+DGG+DLFVHQSSIRS+GFRSL   E VEF +E +++ R KA+DV+GP
Sbjct: 18  FDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNRPKAIDVSGP 77

Query: 61  GEASVQGSRGGG------------------GGGGGGGGGGYSS------GGGACFKCGET 120
             A VQG+ GGG                  GGG GGGGGGY        GG  C+KCGE 
Sbjct: 78  DGAPVQGNSGGGSSGGRGGFGGGRGGGRGSGGGYGGGGGGYGGRGGGGRGGSDCYKCGEP 137

Query: 121 GHMARDCYQ--------SGSQGGGDRY------------GGGGGGGNCYSCGESGHFARE 143
           GHMARDC +         G  GGG  Y            GGGGGGG+CYSCGESGHFAR+
Sbjct: 138 GHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSCGESGHFARD 197

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BLAST of MELO3C013368 vs. ExPASy Swiss-Prot
Match: Q38896 (Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 PE=1 SV=1)

HSP 1 Score: 152.5 bits (384), Expect = 3.5e-36
Identity = 98/178 (55.06%), Postives = 114/178 (64.04%), Query Frame = 0


Query: 1   FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP 60
           F  QKG+GFI+P+DGG+DLFVHQSSIRS+GFRSL   E VEF +E ++ GR KA++V+GP
Sbjct: 22  FDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGRPKAIEVSGP 81

Query: 61  GEASVQGSRG-----------GGGGGGGGGGGGYSSGGG----------------ACFKC 120
             A VQG+ G           GGGGG GGG GG S GGG                +CFKC
Sbjct: 82  DGAPVQGNSGGGGSSGGRGGFGGGGGRGGGRGGGSYGGGYGGRGSGGRGGGGGDNSCFKC 141

Query: 121 GETGHMARDCYQSG----SQGGGDRYGGGGGGG------NCYSCGESGHFARECPSSG 142
           GE GHMAR+C Q G      GGG RYG GGGGG      +CYSCGESGHFAR+C S G
Sbjct: 142 GEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARDCTSGG 199

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BLAST of MELO3C013368 vs. ExPASy Swiss-Prot
Match: Q94C69 (Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 PE=1 SV=1)

HSP 1 Score: 136.3 bits (342), Expect = 2.6e-31
Identity = 91/162 (56.17%), Postives = 106/162 (65.43%), Query Frame = 0


Query: 1   FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP 60
           FSD KGYGFI+P+DGGE+LFVHQSSI SDGFRSL +GE VE+ I   SDG++KA++VT P
Sbjct: 18  FSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKTKAIEVTAP 77

Query: 61  GEASV----QGSRGGG-----------------GGGGG---GGGGGYSSGG-GACFKCGE 120
           G  S+      SRG G                 GG GG   GGGGG  SGG G C+ CG+
Sbjct: 78  GGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGD 137

Query: 121 TGHMARDCYQSGSQGGGDRYGGGGGGGNCYSCGESGHFAREC 138
            GH ARDC QS   GGG+  GGGGGG  CYSCGE GH A++C
Sbjct: 138 VGHFARDCRQS---GGGNSGGGGGGGRPCYSCGEVGHLAKDC 176

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BLAST of MELO3C013368 vs. ExPASy Swiss-Prot
Match: O65639 (Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1)

HSP 1 Score: 125.9 bits (315), Expect = 3.5e-28
Identity = 77/144 (53.47%), Postives = 99/144 (68.75%), Query Frame = 0


Query: 1   FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP 60
           F+  KGYGFI+P+DG  +LFVHQSSI S+G+RSL VG+ VEF I   SDG++KAV+VT P
Sbjct: 18  FNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKTKAVNVTAP 77

Query: 61  GEASVQ---GSRGGGGGGGGGGGGGYSSGGGACFKCGETGHMARDCYQSGSQGGGDRYGG 120
           G  S++    SRG G   GGGG G        C+ CGE GH+++DC   G  GGG+R   
Sbjct: 78  GGGSLKKENNSRGNGARRGGGGSG--------CYNCGELGHISKDCGIGGGGGGGERRSR 137

Query: 121 GGGGGNCYSCGESGHFARECPSSG 142
           GG G  CY+CG++GHFAR+C S+G
Sbjct: 138 GGEG--CYNCGDTGHFARDCTSAG 151

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BLAST of MELO3C013368 vs. ExPASy TrEMBL
Match: A0A1S3BIY4 (LOW QUALITY PROTEIN: glycine-rich protein 2-like OS=Cucumis melo OX=3656 GN=LOC103490405 PE=4 SV=1)

HSP 1 Score: 247.7 bits (631), Expect = 3.0e-62
Identity = 142/194 (73.20%), Postives = 142/194 (73.20%), Query Frame = 0


Query: 1   FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP 60
           FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP
Sbjct: 1   FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP 60

Query: 61  GEASVQGSRGGGGGGGGGGGGGYSS----------------------------------- 120
           GEASVQGSRGGGGGGGGGGGGGYSS                                   
Sbjct: 61  GEASVQGSRGGGGGGGGGGGGGYSSGGGYGGGGGGGRGXRGGGGYGFNGGSGGGGRGGYG 120

Query: 121 -----------------GGGACFKCGETGHMARDCYQSGSQGGGDRYGGGGGGGNCYSCG 143
                            GGGACFKCGETGHMARDCYQSGSQGGGDRYGGGGGGGNCYSCG
Sbjct: 121 GGGGGYGGGGYGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGDRYGGGGGGGNCYSCG 180

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BLAST of MELO3C013368 vs. ExPASy TrEMBL
Match: A0A0A0K4M5 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G010300 PE=4 SV=1)

HSP 1 Score: 232.3 bits (591), Expect = 1.3e-57
Identity = 142/201 (70.65%), Postives = 142/201 (70.65%), Query Frame = 0


Query: 1   FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP 60
           FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP
Sbjct: 12  FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP 71

Query: 61  GEASVQGSRGGGGGGGG-GGGGGYSS---------------------------------- 120
           GEASVQGSRGGGGGGGG GGGGGYSS                                  
Sbjct: 72  GEASVQGSRGGGGGGGGAGGGGGYSSGGGYGGGGGGGRGRRGGGGYGFNGGSGGGGRGGY 131

Query: 121 -------------------GGGACFKCGETGHMARDCYQSGSQ-GGGDRY----GGGGGG 143
                              GGGACFKCGETGHMARDCYQSGSQ GGGDRY    GGGGGG
Sbjct: 132 GGGGGGYGGGGYGGGGGGGGGGACFKCGETGHMARDCYQSGSQGGGGDRYGGGGGGGGGG 191

[Close]

BLAST of MELO3C013368 vs. ExPASy TrEMBL
Match: A0A6J1ERG9 (glycine-rich protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111435206 PE=4 SV=1)

HSP 1 Score: 227.6 bits (579), Expect = 3.2e-56
Identity = 134/191 (70.16%), Postives = 138/191 (72.25%), Query Frame = 0


Query: 1   FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP 60
           FSDQKGYGFISPN+GGEDLFVHQSSIRS+GFRSLGVGEDVEF IEAE+DGRSKAVDVTGP
Sbjct: 12  FSDQKGYGFISPNEGGEDLFVHQSSIRSEGFRSLGVGEDVEFQIEAEADGRSKAVDVTGP 71

Query: 61  GEASVQGSRGGGGGG----GGGGGGGY--------------------------------- 120
           GE+SVQGSRGGGGGG    GGGGGGGY                                 
Sbjct: 72  GESSVQGSRGGGGGGGGSYGGGGGGGYGGGGGGRGRRGGYGFNGGSGGGGRGSYGGSGGG 131

Query: 121 ----------SSGGGACFKCGETGHMARDCYQSGSQGGGDRY--GGGGGGGNCYSCGESG 143
                       GGGACFKCGE GHMARDCYQSGSQGGGDRY  GGGGGGGNCYSCGESG
Sbjct: 132 GYGGGYGSGGGGGGGACFKCGEAGHMARDCYQSGSQGGGDRYSGGGGGGGGNCYSCGESG 191

[Close]

BLAST of MELO3C013368 vs. ExPASy TrEMBL
Match: A0A6J1GLV7 (glycine-rich protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111455151 PE=4 SV=1)

HSP 1 Score: 227.3 bits (578), Expect = 4.2e-56
Identity = 128/169 (75.74%), Postives = 133/169 (78.70%), Query Frame = 0


Query: 1   FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP 60
           FSDQKGYGFISPN+GGEDLFVHQSSIRSDGFRSLGVGEDVEFLIE E+DGR KA+DVTGP
Sbjct: 12  FSDQKGYGFISPNEGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEPEADGRCKAIDVTGP 71

Query: 61  GEASVQGSRGGGGGGG-------------------------GGGGGGYSSGGGACFKCGE 120
           GE+SVQGSRGGGGGGG                         GGGG G   GGG CFKCGE
Sbjct: 72  GESSVQGSRGGGGGGGGERGSRGGGYGFNGGGGGGRGGYGRGGGGYGGGGGGGGCFKCGE 131

Query: 121 TGHMARDCYQSGSQGGGDRY--GGGGGGGNCYSCGESGHFARECPSSGR 143
           TGHMARDCYQ GSQGGGDRY  GGGGGGGNCYSCGESGHFAR+C SSGR
Sbjct: 132 TGHMARDCYQGGSQGGGDRYGGGGGGGGGNCYSCGESGHFARDCQSSGR 180

[Close]

BLAST of MELO3C013368 vs. ExPASy TrEMBL
Match: A0A6J1JLC0 (glycine-rich protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111486249 PE=4 SV=1)

HSP 1 Score: 225.7 bits (574), Expect = 1.2e-55
Identity = 134/196 (68.37%), Postives = 138/196 (70.41%), Query Frame = 0


Query: 1   FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP 60
           FSDQKGYGFISPN+GGEDLFVHQSSIRS+GFRSLGVGEDVEF IEAE+DGRSKAVDVTGP
Sbjct: 12  FSDQKGYGFISPNEGGEDLFVHQSSIRSEGFRSLGVGEDVEFQIEAEADGRSKAVDVTGP 71

Query: 61  GEASVQGSRGGGGGG----GGGGGGGY--------------------------------- 120
           GE+SVQGSRGGGGGG    GGGGGGGY                                 
Sbjct: 72  GESSVQGSRGGGGGGGGSYGGGGGGGYGGGGGGRGRRGGYGFNGGSGGGGRGLYGGSGGG 131

Query: 121 -----------SSGGGACFKCGETGHMARDCYQSGSQGGGDRY------GGGGGGGNCYS 143
                        GGGACFKCGE GHMARDCYQSGSQGGGDRY      GGGGGGGNCYS
Sbjct: 132 GYGGGYGSGGGGGGGGACFKCGEAGHMARDCYQSGSQGGGDRYSGGGGGGGGGGGGNCYS 191

[Close]

BLAST of MELO3C013368 vs. TAIR 10
Match: AT2G21060.1 (glycine-rich protein 2B )

HSP 1 Score: 152.5 bits (384), Expect = 2.5e-37
Identity = 98/178 (55.06%), Postives = 114/178 (64.04%), Query Frame = 0


Query: 1   FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP 60
           F  QKG+GFI+P+DGG+DLFVHQSSIRS+GFRSL   E VEF +E ++ GR KA++V+GP
Sbjct: 22  FDTQKGFGFITPSDGGDDLFVHQSSIRSEGFRSLAAEESVEFDVEVDNSGRPKAIEVSGP 81

Query: 61  GEASVQGSRG-----------GGGGGGGGGGGGYSSGGG----------------ACFKC 120
             A VQG+ G           GGGGG GGG GG S GGG                +CFKC
Sbjct: 82  DGAPVQGNSGGGGSSGGRGGFGGGGGRGGGRGGGSYGGGYGGRGSGGRGGGGGDNSCFKC 141

Query: 121 GETGHMARDCYQSG----SQGGGDRYGGGGGGG------NCYSCGESGHFARECPSSG 142
           GE GHMAR+C Q G      GGG RYG GGGGG      +CYSCGESGHFAR+C S G
Sbjct: 142 GEPGHMARECSQGGGGYSGGGGGGRYGSGGGGGGGGGGLSCYSCGESGHFARDCTSGG 199

[Close]

BLAST of MELO3C013368 vs. TAIR 10
Match: AT4G38680.1 (glycine rich protein 2 )

HSP 1 Score: 152.5 bits (384), Expect = 2.5e-37
Identity = 98/186 (52.69%), Postives = 114/186 (61.29%), Query Frame = 0


Query: 1   FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP 60
           F  QKG+GFI+P+DGG+DLFVHQSSIRS+GFRSL   E VEF +E +++ R KA+DV+GP
Sbjct: 18  FDTQKGFGFITPDDGGDDLFVHQSSIRSEGFRSLAAEEAVEFEVEIDNNNRPKAIDVSGP 77

Query: 61  GEASVQGSRGGG------------------GGGGGGGGGGYSS------GGGACFKCGET 120
             A VQG+ GGG                  GGG GGGGGGY        GG  C+KCGE 
Sbjct: 78  DGAPVQGNSGGGSSGGRGGFGGGRGGGRGSGGGYGGGGGGYGGRGGGGRGGSDCYKCGEP 137

Query: 121 GHMARDCYQ--------SGSQGGGDRY------------GGGGGGGNCYSCGESGHFARE 143
           GHMARDC +         G  GGG  Y            GGGGGGG+CYSCGESGHFAR+
Sbjct: 138 GHMARDCSEGGGGYGGGGGGYGGGGGYGGGGGGYGGGGRGGGGGGGSCYSCGESGHFARD 197

[Close]

BLAST of MELO3C013368 vs. TAIR 10
Match: AT2G17870.1 (cold shock domain protein 3 )

HSP 1 Score: 136.3 bits (342), Expect = 1.9e-32
Identity = 91/162 (56.17%), Postives = 106/162 (65.43%), Query Frame = 0


Query: 1   FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP 60
           FSD KGYGFI+P+DGGE+LFVHQSSI SDGFRSL +GE VE+ I   SDG++KA++VT P
Sbjct: 18  FSDGKGYGFITPDDGGEELFVHQSSIVSDGFRSLTLGESVEYEIALGSDGKTKAIEVTAP 77

Query: 61  GEASV----QGSRGGG-----------------GGGGG---GGGGGYSSGG-GACFKCGE 120
           G  S+      SRG G                 GG GG   GGGGG  SGG G C+ CG+
Sbjct: 78  GGGSLNKKENSSRGSGGNCFNCGEVGHMAKDCDGGSGGKSFGGGGGRRSGGEGECYMCGD 137

Query: 121 TGHMARDCYQSGSQGGGDRYGGGGGGGNCYSCGESGHFAREC 138
            GH ARDC QS   GGG+  GGGGGG  CYSCGE GH A++C
Sbjct: 138 VGHFARDCRQS---GGGNSGGGGGGGRPCYSCGEVGHLAKDC 176

[Close]

BLAST of MELO3C013368 vs. TAIR 10
Match: AT4G36020.1 (cold shock domain protein 1 )

HSP 1 Score: 125.9 bits (315), Expect = 2.5e-29
Identity = 77/144 (53.47%), Postives = 99/144 (68.75%), Query Frame = 0


Query: 1   FSDQKGYGFISPNDGGEDLFVHQSSIRSDGFRSLGVGEDVEFLIEAESDGRSKAVDVTGP 60
           F+  KGYGFI+P+DG  +LFVHQSSI S+G+RSL VG+ VEF I   SDG++KAV+VT P
Sbjct: 18  FNASKGYGFITPDDGSVELFVHQSSIVSEGYRSLTVGDAVEFAITQGSDGKTKAVNVTAP 77

Query: 61  GEASVQ---GSRGGGGGGGGGGGGGYSSGGGACFKCGETGHMARDCYQSGSQGGGDRYGG 120
           G  S++    SRG G   GGGG G        C+ CGE GH+++DC   G  GGG+R   
Sbjct: 78  GGGSLKKENNSRGNGARRGGGGSG--------CYNCGELGHISKDCGIGGGGGGGERRSR 137

Query: 121 GGGGGNCYSCGESGHFARECPSSG 142
           GG G  CY+CG++GHFAR+C S+G
Sbjct: 138 GGEG--CYNCGDTGHFARDCTSAG 151

The following BLAST results are available for this feature:

BLAST of MELO3C013368 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008448117.2	6.1e-62	73.20	PREDICTED: LOW QUALITY PROTEIN: glycine-rich protein 2-like, partial [Cucumis me...	[more]
XP_038888820.1	5.4e-58	71.50	glycine-rich protein 2-like [Benincasa hispida]	[more]
XP_011658593.1	2.7e-57	70.65	glycine-rich protein 2 [Cucumis sativus] >KGN43237.1 hypothetical protein Csa_02...	[more]
XP_022928350.1	6.6e-56	70.16	glycine-rich protein 2-like [Cucurbita moschata] >KAG6589006.1 Cold shock domain...	[more]
XP_023529790.1	6.6e-56	70.16	glycine-rich protein 2-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of MELO3C013368 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
P27484	6.6e-43	54.27	Glycine-rich protein 2 OS=Nicotiana sylvestris OX=4096 GN=GRP-2 PE=2 SV=1	[more]
Q41188	3.5e-36	52.69	Cold shock protein 2 OS=Arabidopsis thaliana OX=3702 GN=CSP2 PE=1 SV=1	[more]
Q38896	3.5e-36	55.06	Cold shock domain-containing protein 4 OS=Arabidopsis thaliana OX=3702 GN=CSP4 P...	[more]
Q94C69	2.6e-31	56.17	Cold shock domain-containing protein 3 OS=Arabidopsis thaliana OX=3702 GN=CSP3 P...	[more]
O65639	3.5e-28	53.47	Cold shock protein 1 OS=Arabidopsis thaliana OX=3702 GN=CSP1 PE=1 SV=1	[more]

BLAST of MELO3C013368 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BIY4	3.0e-62	73.20	LOW QUALITY PROTEIN: glycine-rich protein 2-like OS=Cucumis melo OX=3656 GN=LOC1...	[more]
A0A0A0K4M5	1.3e-57	70.65	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G010300 PE=4 SV=1	[more]
A0A6J1ERG9	3.2e-56	70.16	glycine-rich protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111435206 PE=4 S...	[more]
A0A6J1GLV7	4.2e-56	75.74	glycine-rich protein 2-like OS=Cucurbita moschata OX=3662 GN=LOC111455151 PE=4 S...	[more]
A0A6J1JLC0	1.2e-55	68.37	glycine-rich protein 2-like OS=Cucurbita maxima OX=3661 GN=LOC111486249 PE=4 SV=...	[more]

BLAST of MELO3C013368 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G21060.1	2.5e-37	55.06	glycine-rich protein 2B	[more]
AT4G38680.1	2.5e-37	52.69	glycine rich protein 2	[more]
AT2G17870.1	1.9e-32	56.17	cold shock domain protein 3	[more]
AT4G36020.1	2.5e-29	53.47	cold shock domain protein 1	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR011129	Cold shock domain	SMART	SM00357	csp_8	coord: 1..60 e-value: 2.2E-14 score: 63.8
IPR001878	Zinc finger, CCHC-type	SMART	SM00343	c2hcfinal6	coord: 89..105 e-value: 1.4E-5 score: 34.5 coord: 123..139 e-value: 2.2E-5 score: 33.9
IPR001878	Zinc finger, CCHC-type	PFAM	PF00098	zf-CCHC	coord: 123..139 e-value: 9.1E-8 score: 31.9 coord: 89..103 e-value: 1.4E-7 score: 31.2
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 90..103 score: 11.053757
IPR001878	Zinc finger, CCHC-type	PROSITE	PS50158	ZF_CCHC	coord: 124..139 score: 11.284516
IPR002059	Cold-shock protein, DNA-binding	PFAM	PF00313	CSD	coord: 1..59 e-value: 3.8E-20 score: 71.5
IPR002059	Cold-shock protein, DNA-binding	PROSITE	PS51857	CSD_2	coord: 1..59 score: 27.189341
IPR002059	Cold-shock protein, DNA-binding	CDD	cd04458	CSP_CDS	coord: 1..59 e-value: 4.13168E-22 score: 81.471
None	No IPR available	GENE3D	4.10.60.10		coord: 83..113 e-value: 6.7E-8 score: 34.0 coord: 114..142 e-value: 1.6E-7 score: 32.8
None	No IPR available	GENE3D	2.40.50.140		coord: 1..70 e-value: 4.8E-22 score: 80.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 51..80
None	No IPR available	PANTHER	PTHR46565	COLD SHOCK DOMAIN PROTEIN 2	coord: 1..142
None	No IPR available	PANTHER	PTHR46565:SF8	COLD SHOCK PROTEIN 2	coord: 1..142
IPR019844	Cold-shock (CSD) domain	PROSITE	PS00352	CSD_1	coord: 7..26
IPR012340	Nucleic acid-binding, OB-fold	SUPERFAMILY	50249	Nucleic acid-binding proteins	coord: 1..59
IPR036875	Zinc finger, CCHC-type superfamily	SUPERFAMILY	57756	Retrovirus zinc finger-like domains	coord: 83..140

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C013368.1	MELO3C013368.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding
molecular_function	GO:0008270	zinc ion binding