MELO3C013164 (gene) Melon (DHL92) v4

Overview
NameMELO3C013164
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionMediator of RNA polymerase II transcription subunit 12-like isoform X1
Locationchr11: 8768252 .. 8768777 (-)
RNA-Seq ExpressionMELO3C013164
SyntenyMELO3C013164
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAACACCATGTTTTCAATTGCACTGCCGTTTCCAAACATGGTGCATTTGTATGTGACTGTGAGTATGGTAGATTTGGCCATAAACTTAAATGTAGAACCGACATATGTTGAAGAATATGTTGATGTTGACCCGGAGTCAGATGCACCACCAGTGTGCCATGAAGAAGAAATGGTAGCTACCAACAAATAAACAGAGTTTAGAACAGAAACTGATGACGAATTTGAAGAGATGGATTTCGATGGTTGTGAATATGAAGTTCAATCCAATACATTCACCGATTTAGACATGAATGCAGTAGATTACATTCAAGAACACGATCCAATTATAGTTCCAATGGTGACCAACAACACCAAATTGTACACGGGAATGATTTGTGAAAATAAAGAAATGCTGCAACATATGGTTAAGTGCTTTGCTATTAAGAGTCACGCACCATATGAAGTAGTAGAGTCTACACCGATAAAGTGGGTCATCCGATGTAAGAAGTCGAACGAAGGTTGCAAATGGAGACTTCGTGCAATAA

mRNA sequence

ATGAACACCATGTTTTCAATTGCACTGCCGTTTCCAAACATGGTGCATTTGTATGTGACTGTGAGTATGGTAGATTTGGCCATAAACTTAAATGTAGAACCGACATATGTTGAAGAATATGTTGATGTTGACCCGGAGTCAGATGCACCACCAGTGTGCCATGAAGAAGAAATGGTAGCTACCAACAAATAAACAGAGTTTAGAACAGAAACTGATGACGAATTTGAAGAGATGGATTTCGATGGTTGTGAATATGAAGTTCAATCCAATACATTCACCGATTTAGACATGAATGCAGTAGATTACATTCAAGAACACGATCCAATTATAGTTCCAATGGTGACCAACAACACCAAATTGTACACGGGAATGATTTGTGAAAATAAAGAAATGCTGCAACATATGGTTAAGTGCTTTGCTATTAAGAGTCACGCACCATATGAAGTAGTAGAGTCTACACCGATAAAGTGGGTCATCCGATGTAAGAAGTCGAACGAAGGTTGCAAATGGAGACTTCGTGCAATAA

Coding sequence (CDS)

ATGGATTTCGATGGTTGTGAATATGAAGTTCAATCCAATACATTCACCGATTTAGACATGAATGCAGTAGATTACATTCAAGAACACGATCCAATTATAGTTCCAATGGTGACCAACAACACCAAATTGTACACGGGAATGATTTGTGAAAATAAAGAAATGCTGCAACATATGGTTAAGTGCTTTGCTATTAAGAGTCACGCACCATATGAAGTAGTAGAGTCTACACCGATAAAGTGGGTCATCCGATGTAAGAAGTCGAACGAAGGTTGCAAATGGAGACTTCGTGCAATA

Protein sequence

MDFDGCEYEVQSNTFTDLDMNAVDYIQEHDPIIVPMVTNNTKLYTGMICENKEMLQHMVKCFAIKSHAPYEVVESTPIKWVIRCKKSNEGCKWRLRAI
Homology
BLAST of MELO3C013164 vs. NCBI nr
Match: TYJ98388.1 (uncharacterized protein E5676_scaffold232G001350 [Cucumis melo var. makuwa])

HSP 1 Score: 212.2 bits (539), Expect = 2.0e-51
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0

Query: 1  MDFDGCEYEVQSNTFTDLDMNAVDYIQEHDPIIVPMVTNNTKLYTGMICENKEMLQHMVK 60
          MDFDGCEYEVQSNTFTDLDMNAVDYIQEHDPIIVPMVTNNTKLYTGMICENKEMLQHMVK
Sbjct: 1  MDFDGCEYEVQSNTFTDLDMNAVDYIQEHDPIIVPMVTNNTKLYTGMICENKEMLQHMVK 60

Query: 61 CFAIKSHAPYEVVESTPIKWVIRCKKSNEGCKWRLRAI 99
          CFAIKSHAPYEVVESTPIKWVIRCKKSNEGCKWRLRAI
Sbjct: 61 CFAIKSHAPYEVVESTPIKWVIRCKKSNEGCKWRLRAI 98

BLAST of MELO3C013164 vs. NCBI nr
Match: KAA0034014.1 (uncharacterized protein E6C27_scaffold400G00820 [Cucumis melo var. makuwa])

HSP 1 Score: 201.8 bits (512), Expect = 2.7e-48
Identity = 93/98 (94.90%), Postives = 95/98 (96.94%), Query Frame = 0

Query: 1   MDFDGCEYEVQSNTFTDLDMNAVDYIQEHDPIIVPMVTNNTKLYTGMICENKEMLQHMVK 60
           MDFDGCEYEV SNTFTDLDMNAVD IQEHDPIIVPMVT+NTKLYTGMICENKEM+QHMVK
Sbjct: 120 MDFDGCEYEVPSNTFTDLDMNAVDAIQEHDPIIVPMVTDNTKLYTGMICENKEMMQHMVK 179

Query: 61  CFAIKSHAPYEVVESTPIKWVIRCKKSNEGCKWRLRAI 99
           CFAIKSHAPYEVVESTP KWVIRCKKSNEGCKWRLRAI
Sbjct: 180 CFAIKSHAPYEVVESTPTKWVIRCKKSNEGCKWRLRAI 217

BLAST of MELO3C013164 vs. NCBI nr
Match: KAA0036768.1 (uncharacterized protein E6C27_scaffold20G00510 [Cucumis melo var. makuwa])

HSP 1 Score: 201.4 bits (511), Expect = 3.5e-48
Identity = 93/98 (94.90%), Postives = 95/98 (96.94%), Query Frame = 0

Query: 1   MDFDGCEYEVQSNTFTDLDMNAVDYIQEHDPIIVPMVTNNTKLYTGMICENKEMLQHMVK 60
           MDFDGCEYEV SNTFTDLDMNAVD IQEHDPIIVPMVT+NTKLYTGMICENK+MLQHMVK
Sbjct: 120 MDFDGCEYEVPSNTFTDLDMNAVDVIQEHDPIIVPMVTDNTKLYTGMICENKKMLQHMVK 179

Query: 61  CFAIKSHAPYEVVESTPIKWVIRCKKSNEGCKWRLRAI 99
           CFAIKSHAPYEVVESTP KWVIRCKKSNEGCKWRLRAI
Sbjct: 180 CFAIKSHAPYEVVESTPTKWVIRCKKSNEGCKWRLRAI 217

BLAST of MELO3C013164 vs. NCBI nr
Match: TYJ95836.1 (serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 201.4 bits (511), Expect = 3.5e-48
Identity = 93/98 (94.90%), Postives = 95/98 (96.94%), Query Frame = 0

Query: 1   MDFDGCEYEVQSNTFTDLDMNAVDYIQEHDPIIVPMVTNNTKLYTGMICENKEMLQHMVK 60
           MDFDGCEYEV SNTFTDLDMNAVD IQEHDPIIVPMVT+NTKLYTGMICENK+MLQHMVK
Sbjct: 120 MDFDGCEYEVPSNTFTDLDMNAVDVIQEHDPIIVPMVTDNTKLYTGMICENKKMLQHMVK 179

Query: 61  CFAIKSHAPYEVVESTPIKWVIRCKKSNEGCKWRLRAI 99
           CFAIKSHAPYEVVESTP KWVIRCKKSNEGCKWRLRAI
Sbjct: 180 CFAIKSHAPYEVVESTPTKWVIRCKKSNEGCKWRLRAI 217

BLAST of MELO3C013164 vs. NCBI nr
Match: TYK27427.1 (mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 199.9 bits (507), Expect = 1.0e-47
Identity = 93/98 (94.90%), Postives = 94/98 (95.92%), Query Frame = 0

Query: 1   MDFDGCEYEVQSNTFTDLDMNAVDYIQEHDPIIVPMVTNNTKLYTGMICENKEMLQHMVK 60
           MDFDGCEYEV SNTFTDLDMNAVD IQEHDPIIVPMVT+N KLYTGMICENKEMLQHMVK
Sbjct: 21  MDFDGCEYEVPSNTFTDLDMNAVDDIQEHDPIIVPMVTDNIKLYTGMICENKEMLQHMVK 80

Query: 61  CFAIKSHAPYEVVESTPIKWVIRCKKSNEGCKWRLRAI 99
           CFAIKSHAPYEVVESTP KWVIRCKKSNEGCKWRLRAI
Sbjct: 81  CFAIKSHAPYEVVESTPTKWVIRCKKSNEGCKWRLRAI 118

BLAST of MELO3C013164 vs. ExPASy TrEMBL
Match: A0A5D3BJL0 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold232G001350 PE=4 SV=1)

HSP 1 Score: 212.2 bits (539), Expect = 9.6e-52
Identity = 98/98 (100.00%), Postives = 98/98 (100.00%), Query Frame = 0

Query: 1  MDFDGCEYEVQSNTFTDLDMNAVDYIQEHDPIIVPMVTNNTKLYTGMICENKEMLQHMVK 60
          MDFDGCEYEVQSNTFTDLDMNAVDYIQEHDPIIVPMVTNNTKLYTGMICENKEMLQHMVK
Sbjct: 1  MDFDGCEYEVQSNTFTDLDMNAVDYIQEHDPIIVPMVTNNTKLYTGMICENKEMLQHMVK 60

Query: 61 CFAIKSHAPYEVVESTPIKWVIRCKKSNEGCKWRLRAI 99
          CFAIKSHAPYEVVESTPIKWVIRCKKSNEGCKWRLRAI
Sbjct: 61 CFAIKSHAPYEVVESTPIKWVIRCKKSNEGCKWRLRAI 98

BLAST of MELO3C013164 vs. ExPASy TrEMBL
Match: A0A5A7SS31 (DBD_Tnp_Mut domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold400G00820 PE=4 SV=1)

HSP 1 Score: 201.8 bits (512), Expect = 1.3e-48
Identity = 93/98 (94.90%), Postives = 95/98 (96.94%), Query Frame = 0

Query: 1   MDFDGCEYEVQSNTFTDLDMNAVDYIQEHDPIIVPMVTNNTKLYTGMICENKEMLQHMVK 60
           MDFDGCEYEV SNTFTDLDMNAVD IQEHDPIIVPMVT+NTKLYTGMICENKEM+QHMVK
Sbjct: 120 MDFDGCEYEVPSNTFTDLDMNAVDAIQEHDPIIVPMVTDNTKLYTGMICENKEMMQHMVK 179

Query: 61  CFAIKSHAPYEVVESTPIKWVIRCKKSNEGCKWRLRAI 99
           CFAIKSHAPYEVVESTP KWVIRCKKSNEGCKWRLRAI
Sbjct: 180 CFAIKSHAPYEVVESTPTKWVIRCKKSNEGCKWRLRAI 217

BLAST of MELO3C013164 vs. ExPASy TrEMBL
Match: A0A5D3BAB0 (Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold110G001240 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.7e-48
Identity = 93/98 (94.90%), Postives = 95/98 (96.94%), Query Frame = 0

Query: 1   MDFDGCEYEVQSNTFTDLDMNAVDYIQEHDPIIVPMVTNNTKLYTGMICENKEMLQHMVK 60
           MDFDGCEYEV SNTFTDLDMNAVD IQEHDPIIVPMVT+NTKLYTGMICENK+MLQHMVK
Sbjct: 120 MDFDGCEYEVPSNTFTDLDMNAVDVIQEHDPIIVPMVTDNTKLYTGMICENKKMLQHMVK 179

Query: 61  CFAIKSHAPYEVVESTPIKWVIRCKKSNEGCKWRLRAI 99
           CFAIKSHAPYEVVESTP KWVIRCKKSNEGCKWRLRAI
Sbjct: 180 CFAIKSHAPYEVVESTPTKWVIRCKKSNEGCKWRLRAI 217

BLAST of MELO3C013164 vs. ExPASy TrEMBL
Match: A0A5A7T1X8 (SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold20G00510 PE=4 SV=1)

HSP 1 Score: 201.4 bits (511), Expect = 1.7e-48
Identity = 93/98 (94.90%), Postives = 95/98 (96.94%), Query Frame = 0

Query: 1   MDFDGCEYEVQSNTFTDLDMNAVDYIQEHDPIIVPMVTNNTKLYTGMICENKEMLQHMVK 60
           MDFDGCEYEV SNTFTDLDMNAVD IQEHDPIIVPMVT+NTKLYTGMICENK+MLQHMVK
Sbjct: 120 MDFDGCEYEVPSNTFTDLDMNAVDVIQEHDPIIVPMVTDNTKLYTGMICENKKMLQHMVK 179

Query: 61  CFAIKSHAPYEVVESTPIKWVIRCKKSNEGCKWRLRAI 99
           CFAIKSHAPYEVVESTP KWVIRCKKSNEGCKWRLRAI
Sbjct: 180 CFAIKSHAPYEVVESTPTKWVIRCKKSNEGCKWRLRAI 217

BLAST of MELO3C013164 vs. ExPASy TrEMBL
Match: A0A5D3DUI1 (Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold325G001210 PE=4 SV=1)

HSP 1 Score: 199.9 bits (507), Expect = 4.9e-48
Identity = 93/98 (94.90%), Postives = 94/98 (95.92%), Query Frame = 0

Query: 1   MDFDGCEYEVQSNTFTDLDMNAVDYIQEHDPIIVPMVTNNTKLYTGMICENKEMLQHMVK 60
           MDFDGCEYEV SNTFTDLDMNAVD IQEHDPIIVPMVT+N KLYTGMICENKEMLQHMVK
Sbjct: 21  MDFDGCEYEVPSNTFTDLDMNAVDDIQEHDPIIVPMVTDNIKLYTGMICENKEMLQHMVK 80

Query: 61  CFAIKSHAPYEVVESTPIKWVIRCKKSNEGCKWRLRAI 99
           CFAIKSHAPYEVVESTP KWVIRCKKSNEGCKWRLRAI
Sbjct: 81  CFAIKSHAPYEVVESTPTKWVIRCKKSNEGCKWRLRAI 118

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYJ98388.12.0e-51100.00uncharacterized protein E5676_scaffold232G001350 [Cucumis melo var. makuwa][more]
KAA0034014.12.7e-4894.90uncharacterized protein E6C27_scaffold400G00820 [Cucumis melo var. makuwa][more]
KAA0036768.13.5e-4894.90uncharacterized protein E6C27_scaffold20G00510 [Cucumis melo var. makuwa][more]
TYJ95836.13.5e-4894.90serine/threonine-protein phosphatase 7 long form-like protein [Cucumis melo var.... [more]
TYK27427.11.0e-4794.90mediator of RNA polymerase II transcription subunit 12-like isoform X1 [Cucumis ... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BJL09.6e-52100.00Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7SS311.3e-4894.90DBD_Tnp_Mut domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=... [more]
A0A5D3BAB01.7e-4894.90Serine/threonine-protein phosphatase 7 long form-like protein OS=Cucumis melo va... [more]
A0A5A7T1X81.7e-4894.90SWIM-type domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6... [more]
A0A5D3DUI14.9e-4894.90Mediator of RNA polymerase II transcription subunit 12-like isoform X1 OS=Cucumi... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR004332Transposase, MuDR, plantPFAMPF03108DBD_Tnp_Mutcoord: 42..97
e-value: 1.3E-8
score: 34.7

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C013164.1MELO3C013164.1mRNA