MELO3C013062 (gene) Melon (DHL92) v4

Overview
NameMELO3C013062
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Locationchr04: 16618937 .. 16619392 (+)
RNA-Seq ExpressionMELO3C013062
SyntenyMELO3C013062
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAACACATCCTGCAGCGAAGGGCCTTCTGAACAAATCATTTTCCTATTACGACAAACTGGCCTATGTGTTCGAGAGAGATAGGGCGACGAGTCAAGGTGTAGAGACTTTCGCCGACATTGGGTCTAATGACCCTAGCGGGTACAAGGGATTTCAAATGCTTGATAGAAACGATATAGAGATCCCCACCGTGTACAACCAGGTTTTTAACATGTCCCAGGATGATGTACGGGCCTCACGACCTTGTCAAGCGTCCAACAATAGGACTGAACCGAGTGGATCAAAGCAAAAGAGGGGAGGACAGCATGTGGCTAATGTTGACCTAATTCATGATGCGATGGAGTACGCGAATGACCAGCTAAGGGCCATGCAGAGTGGCCTTCTATCGCGCTTCATAATGAAACTGCAGTTGGCCAAGAAGTCCTTCGCTAATTTCGTGTCATACCCGAACTAA

mRNA sequence

ATGCAAACACATCCTGCAGCGAAGGGCCTTCTGAACAAATCATTTTCCTATTACGACAAACTGGCCTATGTGTTCGAGAGAGATAGGGCGACGAGTCAAGGTGTAGAGACTTTCGCCGACATTGGGTCTAATGACCCTAGCGGGTACAAGGGATTTCAAATGCTTGATAGAAACGATATAGAGATCCCCACCGTGTACAACCAGGTTTTTAACATGTCCCAGGATGATGTACGGGCCTCACGACCTTGTCAAGCGTCCAACAATAGGACTGAACCGAGTGGATCAAAGCAAAAGAGGGGAGGACAGCATGTGGCTAATGTTGACCTAATTCATGATGCGATGGAGTACGCGAATGACCAGCTAAGGGCCATGCAGAGTGGCCTTCTATCGCGCTTCATAATGAAACTGCAGTTGGCCAAGAAGTCCTTCGCTAATTTCGTGTCATACCCGAACTAA

Coding sequence (CDS)

ATGCAAACACATCCTGCAGCGAAGGGCCTTCTGAACAAATCATTTTCCTATTACGACAAACTGGCCTATGTGTTCGAGAGAGATAGGGCGACGAGTCAAGGTGTAGAGACTTTCGCCGACATTGGGTCTAATGACCCTAGCGGGTACAAGGGATTTCAAATGCTTGATAGAAACGATATAGAGATCCCCACCGTGTACAACCAGGTTTTTAACATGTCCCAGGATGATGTACGGGCCTCACGACCTTGTCAAGCGTCCAACAATAGGACTGAACCGAGTGGATCAAAGCAAAAGAGGGGAGGACAGCATGTGGCTAATGTTGACCTAATTCATGATGCGATGGAGTACGCGAATGACCAGCTAAGGGCCATGCAGAGTGGCCTTCTATCGCGCTTCATAATGAAACTGCAGTTGGCCAAGAAGTCCTTCGCTAATTTCGTGTCATACCCGAACTAA

Protein sequence

MQTHPAAKGLLNKSFSYYDKLAYVFERDRATSQGVETFADIGSNDPSGYKGFQMLDRNDIEIPTVYNQVFNMSQDDVRASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQLRAMQSGLLSRFIMKLQLAKKSFANFVSYPN
Homology
BLAST of MELO3C013062 vs. NCBI nr
Match: TYK03726.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 288.9 bits (738), Expect = 2.6e-74
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0

Query: 8   KGLLNKSFSYYDKLAYVFERDRATSQGVETFADIGSNDPSGYKGFQMLDRNDIEIPTVYN 67
           KGLLNKSFSYYDKLAYVFERDRATSQGVETFADIGSNDPSGYKGFQMLDRNDIEIPTVYN
Sbjct: 94  KGLLNKSFSYYDKLAYVFERDRATSQGVETFADIGSNDPSGYKGFQMLDRNDIEIPTVYN 153

Query: 68  QVFNMSQDDVRASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQLRAMQSG 127
           QVFNMSQDDVRASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQLRAMQSG
Sbjct: 154 QVFNMSQDDVRASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQLRAMQSG 213

Query: 128 LLSRFIMKLQLAKKSFANFVSYPN 152
           LLSRFIMKLQLAKKSFANFVSYPN
Sbjct: 214 LLSRFIMKLQLAKKSFANFVSYPN 237

BLAST of MELO3C013062 vs. NCBI nr
Match: KAA0051173.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 278.9 bits (712), Expect = 2.6e-71
Identity = 139/144 (96.53%), Postives = 142/144 (98.61%), Query Frame = 0

Query: 8   KGLLNKSFSYYDKLAYVFERDRATSQGVETFADIGSNDPSGYKGFQMLDRNDIEIPTVYN 67
           KGLLNKSF YY+KLAYVF+RDRATSQGVETFADIGSNDPSGYKGFQMLDRNDIEIPTVYN
Sbjct: 85  KGLLNKSFFYYEKLAYVFKRDRATSQGVETFADIGSNDPSGYKGFQMLDRNDIEIPTVYN 144

Query: 68  QVFNMSQDDVRASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQLRAMQSG 127
           QVFNMSQDDV ASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQLRAM+SG
Sbjct: 145 QVFNMSQDDVWASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQLRAMRSG 204

Query: 128 LLSRFIMKLQLAKKSFANFVSYPN 152
           LLSRFIMKLQLAKKSFANFVSYPN
Sbjct: 205 LLSRFIMKLQLAKKSFANFVSYPN 228

BLAST of MELO3C013062 vs. NCBI nr
Match: KAA0067019.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK26255.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 160.6 bits (405), Expect = 1.0e-35
Identity = 79/122 (64.75%), Postives = 93/122 (76.23%), Query Frame = 0

Query: 1   MQTHPAAKGLLNKSFSYYDKLAYVFERDRATSQGVETFADIGSNDPSGYKGFQMLDRNDI 60
           MQTHP AKGLLNKSFSYYD+LAYVF RDR     VETF D+GSNDPS Y+GFQ  D ND 
Sbjct: 86  MQTHPVAKGLLNKSFSYYDELAYVFGRDRVMGHFVETFIDVGSNDPSWYEGFQTTDGNDK 145

Query: 61  EIPTVYNQVFNMSQDDVRASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQ 120
           E P++Y+Q F+MSQDDVRAS P   S  RT  +GSKQ+R GQ V  +++IH+A+E  NDQ
Sbjct: 146 EFPSMYSQGFDMSQDDVRASHPACTSECRTGSNGSKQRREGQWVGEIEMIHEALECENDQ 205

Query: 121 LR 123
           LR
Sbjct: 206 LR 207

BLAST of MELO3C013062 vs. NCBI nr
Match: KAA0055946.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK28152.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 155.6 bits (392), Expect = 3.4e-34
Identity = 78/124 (62.90%), Postives = 94/124 (75.81%), Query Frame = 0

Query: 1   MQTHPAAKGLLNKSFSYYDKLAYVFERDRATSQGVETFADIGSNDPSGYKGFQMLDRNDI 60
           MQ+HPAAKGLLNK FSYYD+LAYVF RDRAT Q  ETF DI SN+ +GY+GF M D ND+
Sbjct: 69  MQSHPAAKGLLNKLFSYYDELAYVFRRDRATGQFAETFVDIESNELAGYEGFDMSDENDM 128

Query: 61  EIPTVYNQVFNMSQDDVRASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQ 120
           E P +Y+Q   MSQDDVRASRP   S++RT  SGSK+KR  Q    +++IH A+E ANDQ
Sbjct: 129 EFPFMYSQRIVMSQDDVRASRPYSVSDSRTGSSGSKRKRESQWEGEIEMIHMALECANDQ 188

Query: 121 LRAM 125
           LR +
Sbjct: 189 LRTI 192

BLAST of MELO3C013062 vs. NCBI nr
Match: KAA0052074.1 (vacuolar protein sorting-associated protein 41-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 149.1 bits (375), Expect = 3.2e-32
Identity = 74/121 (61.16%), Postives = 92/121 (76.03%), Query Frame = 0

Query: 2   QTHPAAKGLLNKSFSYYDKLAYVFERDRATSQGVETFADIGSNDPSGYKGFQMLDRNDIE 61
           Q+HPAAKGLLNKSF YYD+L YVF RDRAT +  +TFAD+GSN+P GY GF M D N+ E
Sbjct: 10  QSHPAAKGLLNKSFPYYDELTYVFGRDRATGRFTKTFADVGSNEPDGYDGFDMADGNE-E 69

Query: 62  IPTVYNQVFNMSQDDVRASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQL 121
            P+VY+Q  ++SQDDVRASRP + S  RTE SGSK+KRG Q   +V+ IH  ++  N+QL
Sbjct: 70  FPSVYSQGIDLSQDDVRASRPSRGSEGRTESSGSKRKRGSQREEDVEGIHLEIDQTNEQL 129

Query: 122 R 123
           R
Sbjct: 130 R 129

BLAST of MELO3C013062 vs. ExPASy TrEMBL
Match: A0A5D3BZU9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G00980 PE=4 SV=1)

HSP 1 Score: 288.9 bits (738), Expect = 1.2e-74
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0

Query: 8   KGLLNKSFSYYDKLAYVFERDRATSQGVETFADIGSNDPSGYKGFQMLDRNDIEIPTVYN 67
           KGLLNKSFSYYDKLAYVFERDRATSQGVETFADIGSNDPSGYKGFQMLDRNDIEIPTVYN
Sbjct: 94  KGLLNKSFSYYDKLAYVFERDRATSQGVETFADIGSNDPSGYKGFQMLDRNDIEIPTVYN 153

Query: 68  QVFNMSQDDVRASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQLRAMQSG 127
           QVFNMSQDDVRASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQLRAMQSG
Sbjct: 154 QVFNMSQDDVRASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQLRAMQSG 213

Query: 128 LLSRFIMKLQLAKKSFANFVSYPN 152
           LLSRFIMKLQLAKKSFANFVSYPN
Sbjct: 214 LLSRFIMKLQLAKKSFANFVSYPN 237

BLAST of MELO3C013062 vs. ExPASy TrEMBL
Match: A0A5A7U5L6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold511G001280 PE=4 SV=1)

HSP 1 Score: 278.9 bits (712), Expect = 1.3e-71
Identity = 139/144 (96.53%), Postives = 142/144 (98.61%), Query Frame = 0

Query: 8   KGLLNKSFSYYDKLAYVFERDRATSQGVETFADIGSNDPSGYKGFQMLDRNDIEIPTVYN 67
           KGLLNKSF YY+KLAYVF+RDRATSQGVETFADIGSNDPSGYKGFQMLDRNDIEIPTVYN
Sbjct: 85  KGLLNKSFFYYEKLAYVFKRDRATSQGVETFADIGSNDPSGYKGFQMLDRNDIEIPTVYN 144

Query: 68  QVFNMSQDDVRASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQLRAMQSG 127
           QVFNMSQDDV ASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQLRAM+SG
Sbjct: 145 QVFNMSQDDVWASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQLRAMRSG 204

Query: 128 LLSRFIMKLQLAKKSFANFVSYPN 152
           LLSRFIMKLQLAKKSFANFVSYPN
Sbjct: 205 LLSRFIMKLQLAKKSFANFVSYPN 228

BLAST of MELO3C013062 vs. ExPASy TrEMBL
Match: A0A5D3DS68 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G00180 PE=4 SV=1)

HSP 1 Score: 160.6 bits (405), Expect = 5.1e-36
Identity = 79/122 (64.75%), Postives = 93/122 (76.23%), Query Frame = 0

Query: 1   MQTHPAAKGLLNKSFSYYDKLAYVFERDRATSQGVETFADIGSNDPSGYKGFQMLDRNDI 60
           MQTHP AKGLLNKSFSYYD+LAYVF RDR     VETF D+GSNDPS Y+GFQ  D ND 
Sbjct: 86  MQTHPVAKGLLNKSFSYYDELAYVFGRDRVMGHFVETFIDVGSNDPSWYEGFQTTDGNDK 145

Query: 61  EIPTVYNQVFNMSQDDVRASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQ 120
           E P++Y+Q F+MSQDDVRAS P   S  RT  +GSKQ+R GQ V  +++IH+A+E  NDQ
Sbjct: 146 EFPSMYSQGFDMSQDDVRASHPACTSECRTGSNGSKQRREGQWVGEIEMIHEALECENDQ 205

Query: 121 LR 123
           LR
Sbjct: 206 LR 207

BLAST of MELO3C013062 vs. ExPASy TrEMBL
Match: A0A5D3DXB2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00660 PE=4 SV=1)

HSP 1 Score: 155.6 bits (392), Expect = 1.6e-34
Identity = 78/124 (62.90%), Postives = 94/124 (75.81%), Query Frame = 0

Query: 1   MQTHPAAKGLLNKSFSYYDKLAYVFERDRATSQGVETFADIGSNDPSGYKGFQMLDRNDI 60
           MQ+HPAAKGLLNK FSYYD+LAYVF RDRAT Q  ETF DI SN+ +GY+GF M D ND+
Sbjct: 69  MQSHPAAKGLLNKLFSYYDELAYVFRRDRATGQFAETFVDIESNELAGYEGFDMSDENDM 128

Query: 61  EIPTVYNQVFNMSQDDVRASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQ 120
           E P +Y+Q   MSQDDVRASRP   S++RT  SGSK+KR  Q    +++IH A+E ANDQ
Sbjct: 129 EFPFMYSQRIVMSQDDVRASRPYSVSDSRTGSSGSKRKRESQWEGEIEMIHMALECANDQ 188

Query: 121 LRAM 125
           LR +
Sbjct: 189 LRTI 192

BLAST of MELO3C013062 vs. ExPASy TrEMBL
Match: A0A5A7U9Q0 (Vacuolar protein sorting-associated protein 41-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold578G00440 PE=4 SV=1)

HSP 1 Score: 149.1 bits (375), Expect = 1.5e-32
Identity = 74/121 (61.16%), Postives = 92/121 (76.03%), Query Frame = 0

Query: 2   QTHPAAKGLLNKSFSYYDKLAYVFERDRATSQGVETFADIGSNDPSGYKGFQMLDRNDIE 61
           Q+HPAAKGLLNKSF YYD+L YVF RDRAT +  +TFAD+GSN+P GY GF M D N+ E
Sbjct: 10  QSHPAAKGLLNKSFPYYDELTYVFGRDRATGRFTKTFADVGSNEPDGYDGFDMADGNE-E 69

Query: 62  IPTVYNQVFNMSQDDVRASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQL 121
            P+VY+Q  ++SQDDVRASRP + S  RTE SGSK+KRG Q   +V+ IH  ++  N+QL
Sbjct: 70  FPSVYSQGIDLSQDDVRASRPSRGSEGRTESSGSKRKRGSQREEDVEGIHLEIDQTNEQL 129

Query: 122 R 123
           R
Sbjct: 130 R 129

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
TYK03726.12.6e-74100.00retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0051173.12.6e-7196.53retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0067019.11.0e-3564.75retrotransposon protein [Cucumis melo var. makuwa] >TYK26255.1 retrotransposon p... [more]
KAA0055946.13.4e-3462.90retrotransposon protein [Cucumis melo var. makuwa] >TYK28152.1 retrotransposon p... [more]
KAA0052074.13.2e-3261.16vacuolar protein sorting-associated protein 41-like protein [Cucumis melo var. m... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3BZU91.2e-74100.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U5L61.3e-7196.53Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3DS685.1e-3664.75Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3DXB21.6e-3462.90Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U9Q01.5e-3261.16Vacuolar protein sorting-associated protein 41-like protein OS=Cucumis melo var.... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..100
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 77..102

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C013062.1MELO3C013062.1mRNA