Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCAAACACATCCTGCAGCGAAGGGCCTTCTGAACAAATCATTTTCCTATTACGACAAACTGGCCTATGTGTTCGAGAGAGATAGGGCGACGAGTCAAGGTGTAGAGACTTTCGCCGACATTGGGTCTAATGACCCTAGCGGGTACAAGGGATTTCAAATGCTTGATAGAAACGATATAGAGATCCCCACCGTGTACAACCAGGTTTTTAACATGTCCCAGGATGATGTACGGGCCTCACGACCTTGTCAAGCGTCCAACAATAGGACTGAACCGAGTGGATCAAAGCAAAAGAGGGGAGGACAGCATGTGGCTAATGTTGACCTAATTCATGATGCGATGGAGTACGCGAATGACCAGCTAAGGGCCATGCAGAGTGGCCTTCTATCGCGCTTCATAATGAAACTGCAGTTGGCCAAGAAGTCCTTCGCTAATTTCGTGTCATACCCGAACTAA
mRNA sequence
ATGCAAACACATCCTGCAGCGAAGGGCCTTCTGAACAAATCATTTTCCTATTACGACAAACTGGCCTATGTGTTCGAGAGAGATAGGGCGACGAGTCAAGGTGTAGAGACTTTCGCCGACATTGGGTCTAATGACCCTAGCGGGTACAAGGGATTTCAAATGCTTGATAGAAACGATATAGAGATCCCCACCGTGTACAACCAGGTTTTTAACATGTCCCAGGATGATGTACGGGCCTCACGACCTTGTCAAGCGTCCAACAATAGGACTGAACCGAGTGGATCAAAGCAAAAGAGGGGAGGACAGCATGTGGCTAATGTTGACCTAATTCATGATGCGATGGAGTACGCGAATGACCAGCTAAGGGCCATGCAGAGTGGCCTTCTATCGCGCTTCATAATGAAACTGCAGTTGGCCAAGAAGTCCTTCGCTAATTTCGTGTCATACCCGAACTAA
Coding sequence (CDS)
ATGCAAACACATCCTGCAGCGAAGGGCCTTCTGAACAAATCATTTTCCTATTACGACAAACTGGCCTATGTGTTCGAGAGAGATAGGGCGACGAGTCAAGGTGTAGAGACTTTCGCCGACATTGGGTCTAATGACCCTAGCGGGTACAAGGGATTTCAAATGCTTGATAGAAACGATATAGAGATCCCCACCGTGTACAACCAGGTTTTTAACATGTCCCAGGATGATGTACGGGCCTCACGACCTTGTCAAGCGTCCAACAATAGGACTGAACCGAGTGGATCAAAGCAAAAGAGGGGAGGACAGCATGTGGCTAATGTTGACCTAATTCATGATGCGATGGAGTACGCGAATGACCAGCTAAGGGCCATGCAGAGTGGCCTTCTATCGCGCTTCATAATGAAACTGCAGTTGGCCAAGAAGTCCTTCGCTAATTTCGTGTCATACCCGAACTAA
Protein sequence
MQTHPAAKGLLNKSFSYYDKLAYVFERDRATSQGVETFADIGSNDPSGYKGFQMLDRNDIEIPTVYNQVFNMSQDDVRASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQLRAMQSGLLSRFIMKLQLAKKSFANFVSYPN
Homology
BLAST of MELO3C013062 vs. NCBI nr
Match:
TYK03726.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 288.9 bits (738), Expect = 2.6e-74
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0
Query: 8 KGLLNKSFSYYDKLAYVFERDRATSQGVETFADIGSNDPSGYKGFQMLDRNDIEIPTVYN 67
KGLLNKSFSYYDKLAYVFERDRATSQGVETFADIGSNDPSGYKGFQMLDRNDIEIPTVYN
Sbjct: 94 KGLLNKSFSYYDKLAYVFERDRATSQGVETFADIGSNDPSGYKGFQMLDRNDIEIPTVYN 153
Query: 68 QVFNMSQDDVRASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQLRAMQSG 127
QVFNMSQDDVRASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQLRAMQSG
Sbjct: 154 QVFNMSQDDVRASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQLRAMQSG 213
Query: 128 LLSRFIMKLQLAKKSFANFVSYPN 152
LLSRFIMKLQLAKKSFANFVSYPN
Sbjct: 214 LLSRFIMKLQLAKKSFANFVSYPN 237
BLAST of MELO3C013062 vs. NCBI nr
Match:
KAA0051173.1 (retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 278.9 bits (712), Expect = 2.6e-71
Identity = 139/144 (96.53%), Postives = 142/144 (98.61%), Query Frame = 0
Query: 8 KGLLNKSFSYYDKLAYVFERDRATSQGVETFADIGSNDPSGYKGFQMLDRNDIEIPTVYN 67
KGLLNKSF YY+KLAYVF+RDRATSQGVETFADIGSNDPSGYKGFQMLDRNDIEIPTVYN
Sbjct: 85 KGLLNKSFFYYEKLAYVFKRDRATSQGVETFADIGSNDPSGYKGFQMLDRNDIEIPTVYN 144
Query: 68 QVFNMSQDDVRASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQLRAMQSG 127
QVFNMSQDDV ASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQLRAM+SG
Sbjct: 145 QVFNMSQDDVWASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQLRAMRSG 204
Query: 128 LLSRFIMKLQLAKKSFANFVSYPN 152
LLSRFIMKLQLAKKSFANFVSYPN
Sbjct: 205 LLSRFIMKLQLAKKSFANFVSYPN 228
BLAST of MELO3C013062 vs. NCBI nr
Match:
KAA0067019.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK26255.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 160.6 bits (405), Expect = 1.0e-35
Identity = 79/122 (64.75%), Postives = 93/122 (76.23%), Query Frame = 0
Query: 1 MQTHPAAKGLLNKSFSYYDKLAYVFERDRATSQGVETFADIGSNDPSGYKGFQMLDRNDI 60
MQTHP AKGLLNKSFSYYD+LAYVF RDR VETF D+GSNDPS Y+GFQ D ND
Sbjct: 86 MQTHPVAKGLLNKSFSYYDELAYVFGRDRVMGHFVETFIDVGSNDPSWYEGFQTTDGNDK 145
Query: 61 EIPTVYNQVFNMSQDDVRASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQ 120
E P++Y+Q F+MSQDDVRAS P S RT +GSKQ+R GQ V +++IH+A+E NDQ
Sbjct: 146 EFPSMYSQGFDMSQDDVRASHPACTSECRTGSNGSKQRREGQWVGEIEMIHEALECENDQ 205
Query: 121 LR 123
LR
Sbjct: 206 LR 207
BLAST of MELO3C013062 vs. NCBI nr
Match:
KAA0055946.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK28152.1 retrotransposon protein [Cucumis melo var. makuwa])
HSP 1 Score: 155.6 bits (392), Expect = 3.4e-34
Identity = 78/124 (62.90%), Postives = 94/124 (75.81%), Query Frame = 0
Query: 1 MQTHPAAKGLLNKSFSYYDKLAYVFERDRATSQGVETFADIGSNDPSGYKGFQMLDRNDI 60
MQ+HPAAKGLLNK FSYYD+LAYVF RDRAT Q ETF DI SN+ +GY+GF M D ND+
Sbjct: 69 MQSHPAAKGLLNKLFSYYDELAYVFRRDRATGQFAETFVDIESNELAGYEGFDMSDENDM 128
Query: 61 EIPTVYNQVFNMSQDDVRASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQ 120
E P +Y+Q MSQDDVRASRP S++RT SGSK+KR Q +++IH A+E ANDQ
Sbjct: 129 EFPFMYSQRIVMSQDDVRASRPYSVSDSRTGSSGSKRKRESQWEGEIEMIHMALECANDQ 188
Query: 121 LRAM 125
LR +
Sbjct: 189 LRTI 192
BLAST of MELO3C013062 vs. NCBI nr
Match:
KAA0052074.1 (vacuolar protein sorting-associated protein 41-like protein [Cucumis melo var. makuwa])
HSP 1 Score: 149.1 bits (375), Expect = 3.2e-32
Identity = 74/121 (61.16%), Postives = 92/121 (76.03%), Query Frame = 0
Query: 2 QTHPAAKGLLNKSFSYYDKLAYVFERDRATSQGVETFADIGSNDPSGYKGFQMLDRNDIE 61
Q+HPAAKGLLNKSF YYD+L YVF RDRAT + +TFAD+GSN+P GY GF M D N+ E
Sbjct: 10 QSHPAAKGLLNKSFPYYDELTYVFGRDRATGRFTKTFADVGSNEPDGYDGFDMADGNE-E 69
Query: 62 IPTVYNQVFNMSQDDVRASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQL 121
P+VY+Q ++SQDDVRASRP + S RTE SGSK+KRG Q +V+ IH ++ N+QL
Sbjct: 70 FPSVYSQGIDLSQDDVRASRPSRGSEGRTESSGSKRKRGSQREEDVEGIHLEIDQTNEQL 129
Query: 122 R 123
R
Sbjct: 130 R 129
BLAST of MELO3C013062 vs. ExPASy TrEMBL
Match:
A0A5D3BZU9 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold863G00980 PE=4 SV=1)
HSP 1 Score: 288.9 bits (738), Expect = 1.2e-74
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0
Query: 8 KGLLNKSFSYYDKLAYVFERDRATSQGVETFADIGSNDPSGYKGFQMLDRNDIEIPTVYN 67
KGLLNKSFSYYDKLAYVFERDRATSQGVETFADIGSNDPSGYKGFQMLDRNDIEIPTVYN
Sbjct: 94 KGLLNKSFSYYDKLAYVFERDRATSQGVETFADIGSNDPSGYKGFQMLDRNDIEIPTVYN 153
Query: 68 QVFNMSQDDVRASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQLRAMQSG 127
QVFNMSQDDVRASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQLRAMQSG
Sbjct: 154 QVFNMSQDDVRASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQLRAMQSG 213
Query: 128 LLSRFIMKLQLAKKSFANFVSYPN 152
LLSRFIMKLQLAKKSFANFVSYPN
Sbjct: 214 LLSRFIMKLQLAKKSFANFVSYPN 237
BLAST of MELO3C013062 vs. ExPASy TrEMBL
Match:
A0A5A7U5L6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold511G001280 PE=4 SV=1)
HSP 1 Score: 278.9 bits (712), Expect = 1.3e-71
Identity = 139/144 (96.53%), Postives = 142/144 (98.61%), Query Frame = 0
Query: 8 KGLLNKSFSYYDKLAYVFERDRATSQGVETFADIGSNDPSGYKGFQMLDRNDIEIPTVYN 67
KGLLNKSF YY+KLAYVF+RDRATSQGVETFADIGSNDPSGYKGFQMLDRNDIEIPTVYN
Sbjct: 85 KGLLNKSFFYYEKLAYVFKRDRATSQGVETFADIGSNDPSGYKGFQMLDRNDIEIPTVYN 144
Query: 68 QVFNMSQDDVRASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQLRAMQSG 127
QVFNMSQDDV ASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQLRAM+SG
Sbjct: 145 QVFNMSQDDVWASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQLRAMRSG 204
Query: 128 LLSRFIMKLQLAKKSFANFVSYPN 152
LLSRFIMKLQLAKKSFANFVSYPN
Sbjct: 205 LLSRFIMKLQLAKKSFANFVSYPN 228
BLAST of MELO3C013062 vs. ExPASy TrEMBL
Match:
A0A5D3DS68 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold14G00180 PE=4 SV=1)
HSP 1 Score: 160.6 bits (405), Expect = 5.1e-36
Identity = 79/122 (64.75%), Postives = 93/122 (76.23%), Query Frame = 0
Query: 1 MQTHPAAKGLLNKSFSYYDKLAYVFERDRATSQGVETFADIGSNDPSGYKGFQMLDRNDI 60
MQTHP AKGLLNKSFSYYD+LAYVF RDR VETF D+GSNDPS Y+GFQ D ND
Sbjct: 86 MQTHPVAKGLLNKSFSYYDELAYVFGRDRVMGHFVETFIDVGSNDPSWYEGFQTTDGNDK 145
Query: 61 EIPTVYNQVFNMSQDDVRASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQ 120
E P++Y+Q F+MSQDDVRAS P S RT +GSKQ+R GQ V +++IH+A+E NDQ
Sbjct: 146 EFPSMYSQGFDMSQDDVRASHPACTSECRTGSNGSKQRREGQWVGEIEMIHEALECENDQ 205
Query: 121 LR 123
LR
Sbjct: 206 LR 207
BLAST of MELO3C013062 vs. ExPASy TrEMBL
Match:
A0A5D3DXB2 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold289G00660 PE=4 SV=1)
HSP 1 Score: 155.6 bits (392), Expect = 1.6e-34
Identity = 78/124 (62.90%), Postives = 94/124 (75.81%), Query Frame = 0
Query: 1 MQTHPAAKGLLNKSFSYYDKLAYVFERDRATSQGVETFADIGSNDPSGYKGFQMLDRNDI 60
MQ+HPAAKGLLNK FSYYD+LAYVF RDRAT Q ETF DI SN+ +GY+GF M D ND+
Sbjct: 69 MQSHPAAKGLLNKLFSYYDELAYVFRRDRATGQFAETFVDIESNELAGYEGFDMSDENDM 128
Query: 61 EIPTVYNQVFNMSQDDVRASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQ 120
E P +Y+Q MSQDDVRASRP S++RT SGSK+KR Q +++IH A+E ANDQ
Sbjct: 129 EFPFMYSQRIVMSQDDVRASRPYSVSDSRTGSSGSKRKRESQWEGEIEMIHMALECANDQ 188
Query: 121 LRAM 125
LR +
Sbjct: 189 LRTI 192
BLAST of MELO3C013062 vs. ExPASy TrEMBL
Match:
A0A5A7U9Q0 (Vacuolar protein sorting-associated protein 41-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold578G00440 PE=4 SV=1)
HSP 1 Score: 149.1 bits (375), Expect = 1.5e-32
Identity = 74/121 (61.16%), Postives = 92/121 (76.03%), Query Frame = 0
Query: 2 QTHPAAKGLLNKSFSYYDKLAYVFERDRATSQGVETFADIGSNDPSGYKGFQMLDRNDIE 61
Q+HPAAKGLLNKSF YYD+L YVF RDRAT + +TFAD+GSN+P GY GF M D N+ E
Sbjct: 10 QSHPAAKGLLNKSFPYYDELTYVFGRDRATGRFTKTFADVGSNEPDGYDGFDMADGNE-E 69
Query: 62 IPTVYNQVFNMSQDDVRASRPCQASNNRTEPSGSKQKRGGQHVANVDLIHDAMEYANDQL 121
P+VY+Q ++SQDDVRASRP + S RTE SGSK+KRG Q +V+ IH ++ N+QL
Sbjct: 70 FPSVYSQGIDLSQDDVRASRPSRGSEGRTESSGSKRKRGSQREEDVEGIHLEIDQTNEQL 129
Query: 122 R 123
R
Sbjct: 130 R 129
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
TYK03726.1 | 2.6e-74 | 100.00 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0051173.1 | 2.6e-71 | 96.53 | retrotransposon protein [Cucumis melo var. makuwa] | [more] |
KAA0067019.1 | 1.0e-35 | 64.75 | retrotransposon protein [Cucumis melo var. makuwa] >TYK26255.1 retrotransposon p... | [more] |
KAA0055946.1 | 3.4e-34 | 62.90 | retrotransposon protein [Cucumis melo var. makuwa] >TYK28152.1 retrotransposon p... | [more] |
KAA0052074.1 | 3.2e-32 | 61.16 | vacuolar protein sorting-associated protein 41-like protein [Cucumis melo var. m... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5D3BZU9 | 1.2e-74 | 100.00 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7U5L6 | 1.3e-71 | 96.53 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... | [more] |
A0A5D3DS68 | 5.1e-36 | 64.75 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5D3DXB2 | 1.6e-34 | 62.90 | Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... | [more] |
A0A5A7U9Q0 | 1.5e-32 | 61.16 | Vacuolar protein sorting-associated protein 41-like protein OS=Cucumis melo var.... | [more] |
Match Name | E-value | Identity | Description | |