MELO3C012880.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C012880.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like
Location	chr04: 13836890 .. 13837813 (-)
RNA-Seq Expression	MELO3C012880.jh1
Synteny	MELO3C012880.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

GCTACCCAAAAGAAAAAAAAAAAAAAATCCAAACTTTTTCCTTTCCTTCTACAAATCATAAAGATCTATACCAAAAATGGATTCAATACTCTCTGAATTTGAATCCCTAAACAACAACAACAACCCACCATTTGGAGTAGTAGTTACTAACAACACACTTCAAAACCTAGTGGTTGGTTCATCGTCTTCATCTTCGTCGTCATCGTCATCTAGTCGATACGAGAATCAAAAGCGTAGGGATTGGAACACATTTTGTCAATACCTTAAAAATCATAGACCCCCGCTTGCTCTATCAAGGTGTAGTGGAGCTCACGTTCTTGAATTCCTAAGATATTTAGATCAATTTGGTAAAACAAAAGTTCATACTCCAATTTGTCCATTTTATGGTCATCCTAACCCACCTGCCCCTTGCCCTTGTCCTTTAAGACAAGCTTGGGGCAGCCTTGATGCTCTTATTGGGAGACTGAGGGCAGCTTTTGAAGAGAATGGTGGAATGCCCGAAGCTAACCCTTTTGGTGCCCGAGCTGTACGGCTTTATCTACGAGAGGTTCGTGATTTGCAATCTAAAGCAAGAGGAATTAGTTATGAGAAGAAGAAAAGAAAGCGTCCTCAACAACAACAAATTGCTCAATCAAGTAATGGAAATTGAATAATTTTCAACTTCTTTCATTTTTATTTTTCTTTTTCTTTTAATTAATGGTCTTCTTAATTATGATTACTATTATCATGATCTTTATCTTCATCTTGATTTTTTCTTTTCTTTCCTTTTTTTTTTCTTTAATCAATTCTAGGGTTAGTGTTTAAATTTCCCTAATCTAGAGGGAAAATATTATGGTTTGATTTGAAATGTTTTTTTTTCTAATGCTTTTAAGGTGTAACTCACTTATGAATTACAAATTTAATCATCAATATCATCTCTTTTCT

mRNA sequence

GCTACCCAAAAGAAAAAAAAAAAAAAATCCAAACTTTTTCCTTTCCTTCTACAAATCATAAAGATCTATACCAAAAATGGATTCAATACTCTCTGAATTTGAATCCCTAAACAACAACAACAACCCACCATTTGGAGTAGTAGTTACTAACAACACACTTCAAAACCTAGTGGTTGGTTCATCGTCTTCATCTTCGTCGTCATCGTCATCTAGTCGATACGAGAATCAAAAGCGTAGGGATTGGAACACATTTTGTCAATACCTTAAAAATCATAGACCCCCGCTTGCTCTATCAAGGTGTAGTGGAGCTCACGTTCTTGAATTCCTAAGATATTTAGATCAATTTGGTAAAACAAAAGTTCATACTCCAATTTGTCCATTTTATGGTCATCCTAACCCACCTGCCCCTTGCCCTTGTCCTTTAAGACAAGCTTGGGGCAGCCTTGATGCTCTTATTGGGAGACTGAGGGCAGCTTTTGAAGAGAATGGTGGAATGCCCGAAGCTAACCCTTTTGGTGCCCGAGCTGTACGGCTTTATCTACGAGAGGTTCGTGATTTGCAATCTAAAGCAAGAGGAATTAGTTATGAGAAGAAGAAAAGAAAGCGTCCTCAACAACAACAAATTGCTCAATCAAGTAATGGAAATTGAATAATTTTCAACTTCTTTCATTTTTATTTTTCTTTTTCTTTTAATTAATGGTCTTCTTAATTATGATTACTATTATCATGATCTTTATCTTCATCTTGATTTTTTCTTTTCTTTCCTTTTTTTTTTCTTTAATCAATTCTAGGGTTAGTGTTTAAATTTCCCTAATCTAGAGGGAAAATATTATGGTTTGATTTGAAATGTTTTTTTTTCTAATGCTTTTAAGGTGTAACTCACTTATGAATTACAAATTTAATCATCAATATCATCTCTTTTCT

Coding sequence (CDS)

ATGGATTCAATACTCTCTGAATTTGAATCCCTAAACAACAACAACAACCCACCATTTGGAGTAGTAGTTACTAACAACACACTTCAAAACCTAGTGGTTGGTTCATCGTCTTCATCTTCGTCGTCATCGTCATCTAGTCGATACGAGAATCAAAAGCGTAGGGATTGGAACACATTTTGTCAATACCTTAAAAATCATAGACCCCCGCTTGCTCTATCAAGGTGTAGTGGAGCTCACGTTCTTGAATTCCTAAGATATTTAGATCAATTTGGTAAAACAAAAGTTCATACTCCAATTTGTCCATTTTATGGTCATCCTAACCCACCTGCCCCTTGCCCTTGTCCTTTAAGACAAGCTTGGGGCAGCCTTGATGCTCTTATTGGGAGACTGAGGGCAGCTTTTGAAGAGAATGGTGGAATGCCCGAAGCTAACCCTTTTGGTGCCCGAGCTGTACGGCTTTATCTACGAGAGGTTCGTGATTTGCAATCTAAAGCAAGAGGAATTAGTTATGAGAAGAAGAAAAGAAAGCGTCCTCAACAACAACAAATTGCTCAATCAAGTAATGGAAATTGA

Protein sequence

MDSILSEFESLNNNNNPPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQQQIAQSSNGN

Homology

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BLAST of MELO3C012880.jh1 vs. NCBI nr
Match: XP_008447416.1 (PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo] >KAA0038047.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo var. makuwa] >TYK00055.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo var. makuwa])

HSP 1 Score: 380 bits (977), Expect = 3.60e-133
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MDSILSEFESLNNNNNPPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFC 60
           MDSILSEFESLNNNNNPPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFC
Sbjct: 1   MDSILSEFESLNNNNNPPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFC 60

Query: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120
           QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW
Sbjct: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120

Query: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ 180
           GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ
Sbjct: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ 180

Query: 181 QQIAQSSNGN 190
           QQIAQSSNGN
Sbjct: 181 QQIAQSSNGN 190

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BLAST of MELO3C012880.jh1 vs. NCBI nr
Match: XP_011651439.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Cucumis sativus] >KAE8650655.1 hypothetical protein Csa_009615 [Cucumis sativus])

HSP 1 Score: 371 bits (953), Expect = 1.90e-129
Identity = 186/187 (99.47%), Postives = 186/187 (99.47%), Query Frame = 0


Query: 1   MDSILSEFESLNNNNNPPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFC 60
           MDSILSEFESLNNNNN PFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFC
Sbjct: 1   MDSILSEFESLNNNNNQPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFC 60

Query: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120
           QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW
Sbjct: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120

Query: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ 180
           GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ
Sbjct: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ 180

Query: 181 QQIAQSS 187
           QQIAQSS
Sbjct: 181 QQIAQSS 187

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BLAST of MELO3C012880.jh1 vs. NCBI nr
Match: XP_038887548.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Benincasa hispida] >XP_038887549.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Benincasa hispida] >XP_038887550.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Benincasa hispida])

HSP 1 Score: 338 bits (866), Expect = 3.02e-116
Identity = 174/192 (90.62%), Postives = 178/192 (92.71%), Query Frame = 0


Query: 1   MDSILSEFESLNNNNNPP-FGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTF 60
           MDSIL EFE  NNNNN   FG+VV+N TLQNLVVGSSSSS+SS    RYENQKRRDWNTF
Sbjct: 1   MDSILPEFEGFNNNNNQQQFGLVVSNTTLQNLVVGSSSSSTSS----RYENQKRRDWNTF 60

Query: 61  CQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQA 120
           CQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQA
Sbjct: 61  CQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQA 120

Query: 121 WGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQ 180
           WGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQ
Sbjct: 121 WGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQ 180

Query: 181 QQQ--IAQSSNG 189
           QQQ  I+QS NG
Sbjct: 181 QQQQQISQSING 188

[Close]

BLAST of MELO3C012880.jh1 vs. NCBI nr
Match: XP_022963938.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita moschata] >XP_022963939.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita moschata] >XP_022967435.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita maxima] >XP_022967436.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita maxima] >XP_022967437.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita maxima] >XP_023511397.1 protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita pepo subsp. pepo] >KAG6571527.1 Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 6, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 315 bits (808), Expect = 1.69e-107
Identity = 165/193 (85.49%), Postives = 170/193 (88.08%), Query Frame = 0


Query: 1   MDSILSEFESLNNNNNPPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFC 60
           MDSI+ EFE LNN     FGV    + LQNL +GSSSSSS+S    RYENQKRRDWNTFC
Sbjct: 1   MDSIIPEFEGLNNTQQ--FGV----SNLQNLGIGSSSSSSNS----RYENQKRRDWNTFC 60

Query: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120
           QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW
Sbjct: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120

Query: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ 180
           GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ
Sbjct: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ 180

Query: 181 Q----QIAQSSNG 189
           Q    Q+ Q SNG
Sbjct: 181 QRQQQQLPQPSNG 183

[Close]

BLAST of MELO3C012880.jh1 vs. NCBI nr
Match: XP_023532600.1 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 302 bits (773), Expect = 3.52e-102
Identity = 159/183 (86.89%), Postives = 165/183 (90.16%), Query Frame = 0


Query: 1   MDSILSEFESLNNNNNPPFGVVVTNNTLQNLVVGSSSSSSSSSSSS--RYENQKRRDWNT 60
           MDSI +EFE LN      FG     +++ NL  GSSSSSSSSSSSS  RYENQKRRDWNT
Sbjct: 1   MDSI-TEFEGLNAQQ---FG----GSSVPNLGGGSSSSSSSSSSSSNSRYENQKRRDWNT 60

Query: 61  FCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQ 120
           FCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQ
Sbjct: 61  FCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQ 120

Query: 121 AWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRP 180
           AWGSLDALIGRLRAAFEENGGMPEANPFGARA+RLYLREVRD+QSKARGISYEKKKRKRP
Sbjct: 121 AWGSLDALIGRLRAAFEENGGMPEANPFGARAIRLYLREVRDVQSKARGISYEKKKRKRP 175

[Close]

BLAST of MELO3C012880.jh1 vs. ExPASy Swiss-Prot
Match: O82268 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LSH3 PE=1 SV=1)

HSP 1 Score: 273.1 bits (697), Expect = 2.4e-72
Identity = 133/153 (86.93%), Postives = 140/153 (91.50%), Query Frame = 0


Query: 36  SSSSSSSSSSSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKV 95
           SSSSS S++SSRYENQKRRDWNTF QYL+NHRPPL+LSRCSGAHVLEFLRYLDQFGKTKV
Sbjct: 43  SSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKV 102

Query: 96  HTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYL 155
           HT IC FYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGG PE NPFGARAVRLYL
Sbjct: 103 HTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYL 162

Query: 156 REVRDLQSKARGISYEKKKRKRPQQQQIAQSSN 189
           REVRD+QSKARG+SYEKKKRKRP       SS+
Sbjct: 163 REVRDMQSKARGVSYEKKKRKRPLPSSSTSSSS 195

[Close]

BLAST of MELO3C012880.jh1 vs. ExPASy Swiss-Prot
Match: A2XAV5 (Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 1.3e-70
Identity = 125/145 (86.21%), Postives = 136/145 (93.79%), Query Frame = 0


Query: 34  GSSSSSSSSSSSSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKT 93
           G  S SSSS S SRYE+QKRRDWNTF QYL+NHRPPL+LSRCSGAHVLEFL+Y+DQFGKT
Sbjct: 67  GGPSPSSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKT 126

Query: 94  KVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRL 153
           KVHTP+CPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAA+EENGG PE NPFGARAVRL
Sbjct: 127 KVHTPVCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRL 186

Query: 154 YLREVRDLQSKARGISYEKKKRKRP 179
           YLREVR+ Q++ARGISYEKKKRK+P
Sbjct: 187 YLREVRETQARARGISYEKKKRKKP 211

[Close]

BLAST of MELO3C012880.jh1 vs. ExPASy Swiss-Prot
Match: Q6K5X1 (Protein G1-like6 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L6 PE=1 SV=1)

HSP 1 Score: 267.3 bits (682), Expect = 1.3e-70
Identity = 125/145 (86.21%), Postives = 136/145 (93.79%), Query Frame = 0


Query: 34  GSSSSSSSSSSSSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKT 93
           G  S SSSS S SRYE+QKRRDWNTF QYL+NHRPPL+LSRCSGAHVLEFL+Y+DQFGKT
Sbjct: 67  GGPSPSSSSPSLSRYESQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLKYMDQFGKT 126

Query: 94  KVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRL 153
           KVHTP+CPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAA+EENGG PE NPFGARAVRL
Sbjct: 127 KVHTPVCPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGTPEMNPFGARAVRL 186

Query: 154 YLREVRDLQSKARGISYEKKKRKRP 179
           YLREVR+ Q++ARGISYEKKKRK+P
Sbjct: 187 YLREVRETQARARGISYEKKKRKKP 211

[Close]

BLAST of MELO3C012880.jh1 vs. ExPASy Swiss-Prot
Match: Q9LW68 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LSH4 PE=1 SV=1)

HSP 1 Score: 265.8 bits (678), Expect = 3.8e-70
Identity = 137/183 (74.86%), Postives = 147/183 (80.33%), Query Frame = 0


Query: 1   MDSILSEFESLNNNNNPPFGVVVTNNTLQNLVVGSSSSSSSSSSS-----SRYENQKRRD 60
           MD I+    + N ++N    +     T       SSSSSSSS  S     SRYENQKRRD
Sbjct: 1   MDHIIGFMGTTNMSHNTNLMIAAAATT----TTTSSSSSSSSGGSGTNQLSRYENQKRRD 60

Query: 61  WNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCP 120
           WNTF QYL+NHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHT +CPF+GHPNPPAPC CP
Sbjct: 61  WNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACP 120

Query: 121 LRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKR 179
           LRQAWGSLDALIGRLRAAFEENGG PE NPFGARAVRLYLREVRD Q+KARGISYEKKKR
Sbjct: 121 LRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKR 179

[Close]

BLAST of MELO3C012880.jh1 vs. ExPASy Swiss-Prot
Match: A2XVI8 (Protein G1-like4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_16643 PE=3 SV=1)

HSP 1 Score: 260.0 bits (663), Expect = 2.1e-68
Identity = 126/157 (80.25%), Postives = 141/157 (89.81%), Query Frame = 0


Query: 34  GSSSSSSSSS-------SSSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRY 93
           GSSSS+SS S       S SRYE QKRRDWNTF QYL+NHRPPL+L++CSGAHVLEFLRY
Sbjct: 21  GSSSSNSSPSMGAGAPQSPSRYEAQKRRDWNTFGQYLRNHRPPLSLAQCSGAHVLEFLRY 80

Query: 94  LDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPF 153
           LDQFGKTKVHT  CPF+GHP+PPAPCPCPLRQAWGSLDAL+GRLRAAFEENGG PE+NPF
Sbjct: 81  LDQFGKTKVHTAACPFFGHPSPPAPCPCPLRQAWGSLDALVGRLRAAFEENGGRPESNPF 140

Query: 154 GARAVRLYLREVRDLQSKARGISYEKKKRKRPQQQQI 184
            ARAVRLYLREVR+ Q++ARG+SYEKKKRK+PQQQQ+
Sbjct: 141 AARAVRLYLREVREHQARARGVSYEKKKRKKPQQQQL 177

[Close]

BLAST of MELO3C012880.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BLY0 (Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold31142G00010 PE=3 SV=1)

HSP 1 Score: 380 bits (977), Expect = 1.74e-133
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MDSILSEFESLNNNNNPPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFC 60
           MDSILSEFESLNNNNNPPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFC
Sbjct: 1   MDSILSEFESLNNNNNPPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFC 60

Query: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120
           QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW
Sbjct: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120

Query: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ 180
           GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ
Sbjct: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ 180

Query: 181 QQIAQSSNGN 190
           QQIAQSSNGN
Sbjct: 181 QQIAQSSNGN 190

[Close]

BLAST of MELO3C012880.jh1 vs. ExPASy TrEMBL
Match: A0A1S3BHE8 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo OX=3656 GN=LOC103489869 PE=3 SV=1)

HSP 1 Score: 380 bits (977), Expect = 1.74e-133
Identity = 190/190 (100.00%), Postives = 190/190 (100.00%), Query Frame = 0


Query: 1   MDSILSEFESLNNNNNPPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFC 60
           MDSILSEFESLNNNNNPPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFC
Sbjct: 1   MDSILSEFESLNNNNNPPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFC 60

Query: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120
           QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW
Sbjct: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120

Query: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ 180
           GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ
Sbjct: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ 180

Query: 181 QQIAQSSNGN 190
           QQIAQSSNGN
Sbjct: 181 QQIAQSSNGN 190

[Close]

BLAST of MELO3C012880.jh1 vs. ExPASy TrEMBL
Match: A0A0A0LB62 (ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G383780 PE=3 SV=1)

HSP 1 Score: 377 bits (969), Expect = 2.89e-132
Identity = 189/190 (99.47%), Postives = 189/190 (99.47%), Query Frame = 0


Query: 1   MDSILSEFESLNNNNNPPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFC 60
           MDSILSEFESLNNNNN PFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFC
Sbjct: 1   MDSILSEFESLNNNNNQPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFC 60

Query: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120
           QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW
Sbjct: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120

Query: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ 180
           GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ
Sbjct: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ 180

Query: 181 QQIAQSSNGN 190
           QQIAQSSNGN
Sbjct: 181 QQIAQSSNGN 190

[Close]

BLAST of MELO3C012880.jh1 vs. ExPASy TrEMBL
Match: A0A6J1HQU3 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucurbita maxima OX=3661 GN=LOC111466975 PE=3 SV=1)

HSP 1 Score: 315 bits (808), Expect = 8.20e-108
Identity = 165/193 (85.49%), Postives = 170/193 (88.08%), Query Frame = 0


Query: 1   MDSILSEFESLNNNNNPPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFC 60
           MDSI+ EFE LNN     FGV    + LQNL +GSSSSSS+S    RYENQKRRDWNTFC
Sbjct: 1   MDSIIPEFEGLNNTQQ--FGV----SNLQNLGIGSSSSSSNS----RYENQKRRDWNTFC 60

Query: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120
           QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW
Sbjct: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120

Query: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ 180
           GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ
Sbjct: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ 180

Query: 181 Q----QIAQSSNG 189
           Q    Q+ Q SNG
Sbjct: 181 QRQQQQLPQPSNG 183

[Close]

BLAST of MELO3C012880.jh1 vs. ExPASy TrEMBL
Match: A0A6J1HLN0 (protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucurbita moschata OX=3662 GN=LOC111464089 PE=3 SV=1)

HSP 1 Score: 315 bits (808), Expect = 8.20e-108
Identity = 165/193 (85.49%), Postives = 170/193 (88.08%), Query Frame = 0


Query: 1   MDSILSEFESLNNNNNPPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFC 60
           MDSI+ EFE LNN     FGV    + LQNL +GSSSSSS+S    RYENQKRRDWNTFC
Sbjct: 1   MDSIIPEFEGLNNTQQ--FGV----SNLQNLGIGSSSSSSNS----RYENQKRRDWNTFC 60

Query: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120
           QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW
Sbjct: 61  QYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAW 120

Query: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ 180
           GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ
Sbjct: 121 GSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQ 180

Query: 181 Q----QIAQSSNG 189
           Q    Q+ Q SNG
Sbjct: 181 QRQQQQLPQPSNG 183

[Close]

BLAST of MELO3C012880.jh1 vs. TAIR 10
Match: AT2G31160.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 273.1 bits (697), Expect = 1.7e-73
Identity = 133/153 (86.93%), Postives = 140/153 (91.50%), Query Frame = 0


Query: 36  SSSSSSSSSSSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKV 95
           SSSSS S++SSRYENQKRRDWNTF QYL+NHRPPL+LSRCSGAHVLEFLRYLDQFGKTKV
Sbjct: 43  SSSSSPSANSSRYENQKRRDWNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKV 102

Query: 96  HTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYL 155
           HT IC FYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGG PE NPFGARAVRLYL
Sbjct: 103 HTNICHFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGKPETNPFGARAVRLYL 162

Query: 156 REVRDLQSKARGISYEKKKRKRPQQQQIAQSSN 189
           REVRD+QSKARG+SYEKKKRKRP       SS+
Sbjct: 163 REVRDMQSKARGVSYEKKKRKRPLPSSSTSSSS 195

[Close]

BLAST of MELO3C012880.jh1 vs. TAIR 10
Match: AT3G23290.2 (Protein of unknown function (DUF640) )

HSP 1 Score: 265.8 bits (678), Expect = 2.7e-71
Identity = 137/183 (74.86%), Postives = 147/183 (80.33%), Query Frame = 0


Query: 1   MDSILSEFESLNNNNNPPFGVVVTNNTLQNLVVGSSSSSSSSSSS-----SRYENQKRRD 60
           MD I+    + N ++N    +     T       SSSSSSSS  S     SRYENQKRRD
Sbjct: 1   MDHIIGFMGTTNMSHNTNLMIAAAATT----TTTSSSSSSSSGGSGTNQLSRYENQKRRD 60

Query: 61  WNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCP 120
           WNTF QYL+NHRPPL+LSRCSGAHVLEFLRYLDQFGKTKVHT +CPF+GHPNPPAPC CP
Sbjct: 61  WNTFGQYLRNHRPPLSLSRCSGAHVLEFLRYLDQFGKTKVHTHLCPFFGHPNPPAPCACP 120

Query: 121 LRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKR 179
           LRQAWGSLDALIGRLRAAFEENGG PE NPFGARAVRLYLREVRD Q+KARGISYEKKKR
Sbjct: 121 LRQAWGSLDALIGRLRAAFEENGGSPETNPFGARAVRLYLREVRDSQAKARGISYEKKKR 179

[Close]

BLAST of MELO3C012880.jh1 vs. TAIR 10
Match: AT5G28490.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 246.1 bits (627), Expect = 2.2e-65
Identity = 119/151 (78.81%), Postives = 133/151 (88.08%), Query Frame = 0


Query: 35  SSSSSSSSSSSSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKTK 94
           +SS+  +  SSSRYENQKRRDWNTFCQYL+NHRPPL+L  CSGAHVLEFLRYLDQFGKTK
Sbjct: 13  NSSTQLTPPSSSRYENQKRRDWNTFCQYLRNHRPPLSLPSCSGAHVLEFLRYLDQFGKTK 72

Query: 95  VHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRLY 154
           VH   C F+G PNPPAPCPCPLRQAWGSLDALIGRLRAA+EENGG PEANPFG+RAVRL+
Sbjct: 73  VHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGRLRAAYEENGGPPEANPFGSRAVRLF 132

Query: 155 LREVRDLQSKARGISYEKKK----RKRPQQQ 182
           LREVRD Q+KARG+SYEKK+    R++PQ Q
Sbjct: 133 LREVRDFQAKARGVSYEKKRKRVNRQKPQTQ 163

[Close]

BLAST of MELO3C012880.jh1 vs. TAIR 10
Match: AT3G04510.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 243.0 bits (619), Expect = 1.9e-64
Identity = 125/177 (70.62%), Postives = 143/177 (80.79%), Query Frame = 0


Query: 10  SLNNNNNPPFGVVVTNNTLQNLVVGSSSSSSSSSSSSRYENQKRRDWNTFCQYLKNHRPP 69
           S N+NN  P       NT  +L   + SS SS  SSSRYENQKRRDWNTFCQYL+NH PP
Sbjct: 5   SQNHNNRNP-------NT--SLSTQTPSSFSSPPSSSRYENQKRRDWNTFCQYLRNHHPP 64

Query: 70  LALSRCSGAHVLEFLRYLDQFGKTKVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGR 129
           L+L+ CSGAHVL+FLRYLDQFGKTKVH   C F+G PNPPAPCPCPLRQAWGSLDALIGR
Sbjct: 65  LSLASCSGAHVLDFLRYLDQFGKTKVHHQNCAFFGLPNPPAPCPCPLRQAWGSLDALIGR 124

Query: 130 LRAAFEENGGMPEANPFGARAVRLYLREVRDLQSKARGISYEKKKRKRPQQQQIAQS 187
           LRAA+EENGG PE +PFG+R+VR++LREVRD Q+K+RG+SYE KKRKR   +QI QS
Sbjct: 125 LRAAYEENGGAPETSPFGSRSVRIFLREVRDFQAKSRGVSYE-KKRKRVNNKQITQS 171

[Close]

BLAST of MELO3C012880.jh1 vs. TAIR 10
Match: AT1G07090.1 (Protein of unknown function (DUF640) )

HSP 1 Score: 240.7 bits (613), Expect = 9.4e-64
Identity = 112/145 (77.24%), Postives = 128/145 (88.28%), Query Frame = 0


Query: 34  GSSSSSSSSSSSSRYENQKRRDWNTFCQYLKNHRPPLALSRCSGAHVLEFLRYLDQFGKT 93
           G S  SS  ++ SRYE+QKRRDWNTF QYLKNH+PPLALSRCSGAHV+EFL+YLDQFGKT
Sbjct: 18  GPSFVSSPPATPSRYESQKRRDWNTFLQYLKNHKPPLALSRCSGAHVIEFLKYLDQFGKT 77

Query: 94  KVHTPICPFYGHPNPPAPCPCPLRQAWGSLDALIGRLRAAFEENGGMPEANPFGARAVRL 153
           KVH   CP++GH  PP+PC CPL+QAWGSLDALIGRLRAA+EENGG P++NPF ARAVR+
Sbjct: 78  KVHVAACPYFGHQQPPSPCSCPLKQAWGSLDALIGRLRAAYEENGGRPDSNPFAARAVRI 137

Query: 154 YLREVRDLQSKARGISYEKKKRKRP 179
           YLREVR+ Q+KARGI YEKKKRKRP
Sbjct: 138 YLREVRESQAKARGIPYEKKKRKRP 162

The following BLAST results are available for this feature:

BLAST of MELO3C012880.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008447416.1	3.60e-133	100.00	PREDICTED: protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucumis melo] >KAA00...	[more]
XP_011651439.1	1.90e-129	99.47	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 [Cucumis sativus] >KAE8650655.1 hypot...	[more]
XP_038887548.1	3.02e-116	90.63	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Benincasa hispida] >XP_03888754...	[more]
XP_022963938.1	1.69e-107	85.49	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita moschata] >XP_0229639...	[more]
XP_023532600.1	3.52e-102	86.89	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of MELO3C012880.jh1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
O82268	2.4e-72	86.93	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
A2XAV5	1.3e-70	86.21	Protein G1-like6 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_09389 PE=3 SV=1	[more]
Q6K5X1	1.3e-70	86.21	Protein G1-like6 OS=Oryza sativa subsp. japonica OX=39947 GN=G1L6 PE=1 SV=1	[more]
Q9LW68	3.8e-70	74.86	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 4 OS=Arabidopsis thaliana OX=3702 GN=LS...	[more]
A2XVI8	2.1e-68	80.25	Protein G1-like4 OS=Oryza sativa subsp. indica OX=39946 GN=OsI_16643 PE=3 SV=1	[more]

BLAST of MELO3C012880.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BLY0	1.74e-133	100.00	Protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo var. makuwa OX=1...	[more]
A0A1S3BHE8	1.74e-133	100.00	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucumis melo OX=3656 GN=LOC10...	[more]
A0A0A0LB62	2.89e-132	99.47	ALOG domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_3G383780 PE=3 S...	[more]
A0A6J1HQU3	8.20e-108	85.49	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucurbita maxima OX=3661 GN=L...	[more]
A0A6J1HLN0	8.20e-108	85.49	protein LIGHT-DEPENDENT SHORT HYPOCOTYLS 3-like OS=Cucurbita moschata OX=3662 GN...	[more]

BLAST of MELO3C012880.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G31160.1	1.7e-73	86.93	Protein of unknown function (DUF640)	[more]
AT3G23290.2	2.7e-71	74.86	Protein of unknown function (DUF640)	[more]
AT5G28490.1	2.2e-65	78.81	Protein of unknown function (DUF640)	[more]
AT3G04510.1	1.9e-64	70.62	Protein of unknown function (DUF640)	[more]
AT1G07090.1	9.4e-64	77.24	Protein of unknown function (DUF640)	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR006936	ALOG domain	PFAM	PF04852	DUF640	coord: 37..160 e-value: 1.0E-66 score: 222.8
IPR006936	ALOG domain	PROSITE	PS51697	ALOG	coord: 47..174 score: 84.495857
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 166..190
None	No IPR available	PANTHER	PTHR31165:SF89	G1-LIKE PROTEIN	coord: 1..186
IPR040222	ALOG family	PANTHER	PTHR31165	PROTEIN G1-LIKE2	coord: 1..186

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C012880.jh1.t1	MELO3C012880.jh1.t1	mRNA