MELO3C012680 (gene) Melon (DHL92) v4

Overview


Name	MELO3C012680
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Glial fibrillary acidic protein-like
Location	chr01: 16634698 .. 16635003 (+)
RNA-Seq Expression	MELO3C012680
Synteny	MELO3C012680

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGAATTGTGTTTTGGCAACAGAGAACGAAAAGTTAAGAGAAGAAGTCAAGAAATGGGTCCAGCAAGCTGTTAATACTCAAAGAGATTTAGACGAGGCGAAACGAAAACGATTGGAGTTGGAGAAGGAAAACGATTCTTTAAACACTGAGGCAATCCAAGTGAGAAAAAAGAATAAGAGGTTATTAAGGAATATTGCCGACTTACATGAAGAGATGGAAGCTAAAAAGGTATGCATTATATATTTGAAACATGAAATAGAAAGATTGAATGGGGTTGCCTTAGAATTTCAAAATGCATTACATGAA

mRNA sequence

ATGAATTGTGTTTTGGCAACAGAGAACGAAAAGTTAAGAGAAGAAGTCAAGAAATGGGTCCAGCAAGCTGTTAATACTCAAAGAGATTTAGACGAGGCGAAACGAAAACGATTGGAGTTGGAGAAGGAAAACGATTCTTTAAACACTGAGGCAATCCAAGTGAGAAAAAAGAATAAGAGGTTATTAAGGAATATTGCCGACTTACATGAAGAGATGGAAGCTAAAAAGACATGAAATAGAAAGATTGAATGGGGTTGCCTTAGAATTTCAAAATGCATTACATGAA

Coding sequence (CDS)

ATGAATTGTGTTTTGGCAACAGAGAACGAAAAGTTAAGAGAAGAAGTCAAGAAATGGGTCCAGCAAGCTGTTAATACTCAAAGAGATTTAGACGAGGCGAAACGAAAACGATTGGAGTTGGAGAAGGAAAACGATTCTTTAAACACTGAGGCAATCCAAGTGAGAAAAAAGAATAAGAGGTTATTAAGGAATATTGCCGACTTACATGAAGAGATGGAAGCTAAAAAGACATGA

Protein sequence

MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKRLLRNIADLHEEMEAKKT

Homology

[Close]

BLAST of MELO3C012680 vs. NCBI nr
Match: KAA0049672.1 (uncharacterized protein E6C27_scaffold76G00070 [Cucumis melo var. makuwa])

HSP 1 Score: 144.1 bits (362), Expect = 5.2e-31
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60
          MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR
Sbjct: 1  MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60

Query: 61 LLRNIADLHEEMEAKKT 78
          LLRNIADLHEEMEAKKT
Sbjct: 61 LLRNIADLHEEMEAKKT 77

[Close]

BLAST of MELO3C012680 vs. NCBI nr
Match: TYK12200.1 (uncharacterized protein E5676_scaffold106G001510 [Cucumis melo var. makuwa])

HSP 1 Score: 144.1 bits (362), Expect = 5.2e-31
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60
          MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR
Sbjct: 1  MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60

Query: 61 LLRNIADLHEEMEAKKT 78
          LLRNIADLHEEMEAKKT
Sbjct: 61 LLRNIADLHEEMEAKKT 77

[Close]

BLAST of MELO3C012680 vs. NCBI nr
Match: TYK16834.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 137.1 bits (344), Expect = 6.3e-29
Identity = 73/77 (94.81%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1   MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60
           MNCV+ATENEKLREEVKKWVQQAVNTQRDLDEAKRK LELEKENDSLNTEAIQVRKKNKR
Sbjct: 349 MNCVMATENEKLREEVKKWVQQAVNTQRDLDEAKRKLLELEKENDSLNTEAIQVRKKNKR 408

Query: 61  LLRNIADLHEEMEAKKT 78
           LLRNIA+LHEE+EAKKT
Sbjct: 409 LLRNIANLHEEIEAKKT 425

[Close]

BLAST of MELO3C012680 vs. NCBI nr
Match: KAA0032013.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 137.1 bits (344), Expect = 6.3e-29
Identity = 73/77 (94.81%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1   MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60
           MNCV+ATENEKLREEVKKWVQQAVNTQRDLDEAKRK LELEKENDSLNTEAIQVRKKNKR
Sbjct: 285 MNCVMATENEKLREEVKKWVQQAVNTQRDLDEAKRKLLELEKENDSLNTEAIQVRKKNKR 344

Query: 61  LLRNIADLHEEMEAKKT 78
           LLRNIA+LHEE+EAKKT
Sbjct: 345 LLRNIANLHEEIEAKKT 361

[Close]

BLAST of MELO3C012680 vs. NCBI nr
Match: KAA0065294.1 (glial fibrillary acidic protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 137.1 bits (344), Expect = 6.3e-29
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60
          MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQ+RKKNKR
Sbjct: 1  MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQMRKKNKR 60

Query: 61 LLRNIADLHEEMEAKK 77
          LLRNIA+LHEE+EAKK
Sbjct: 61 LLRNIANLHEEIEAKK 76

[Close]

BLAST of MELO3C012680 vs. ExPASy TrEMBL
Match: A0A5A7U1L8 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold76G00070 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.5e-31
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60
          MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR
Sbjct: 1  MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60

Query: 61 LLRNIADLHEEMEAKKT 78
          LLRNIADLHEEMEAKKT
Sbjct: 61 LLRNIADLHEEMEAKKT 77

[Close]

BLAST of MELO3C012680 vs. ExPASy TrEMBL
Match: A0A5D3CLA9 (Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G001510 PE=4 SV=1)

HSP 1 Score: 144.1 bits (362), Expect = 2.5e-31
Identity = 77/77 (100.00%), Postives = 77/77 (100.00%), Query Frame = 0


Query: 1  MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60
          MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR
Sbjct: 1  MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60

Query: 61 LLRNIADLHEEMEAKKT 78
          LLRNIADLHEEMEAKKT
Sbjct: 61 LLRNIADLHEEMEAKKT 77

[Close]

BLAST of MELO3C012680 vs. ExPASy TrEMBL
Match: A0A5A7VDD9 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold1023G00070 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.1e-29
Identity = 73/76 (96.05%), Postives = 76/76 (100.00%), Query Frame = 0


Query: 1  MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60
          MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQ+RKKNKR
Sbjct: 1  MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQMRKKNKR 60

Query: 61 LLRNIADLHEEMEAKK 77
          LLRNIA+LHEE+EAKK
Sbjct: 61 LLRNIANLHEEIEAKK 76

[Close]

BLAST of MELO3C012680 vs. ExPASy TrEMBL
Match: A0A5A7SNY0 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold134G001110 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.1e-29
Identity = 73/77 (94.81%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1   MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60
           MNCV+ATENEKLREEVKKWVQQAVNTQRDLDEAKRK LELEKENDSLNTEAIQVRKKNKR
Sbjct: 285 MNCVMATENEKLREEVKKWVQQAVNTQRDLDEAKRKLLELEKENDSLNTEAIQVRKKNKR 344

Query: 61  LLRNIADLHEEMEAKKT 78
           LLRNIA+LHEE+EAKKT
Sbjct: 345 LLRNIANLHEEIEAKKT 361

[Close]

BLAST of MELO3C012680 vs. ExPASy TrEMBL
Match: A0A5D3D0S2 (Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold96G001090 PE=4 SV=1)

HSP 1 Score: 137.1 bits (344), Expect = 3.1e-29
Identity = 73/77 (94.81%), Postives = 76/77 (98.70%), Query Frame = 0


Query: 1   MNCVLATENEKLREEVKKWVQQAVNTQRDLDEAKRKRLELEKENDSLNTEAIQVRKKNKR 60
           MNCV+ATENEKLREEVKKWVQQAVNTQRDLDEAKRK LELEKENDSLNTEAIQVRKKNKR
Sbjct: 349 MNCVMATENEKLREEVKKWVQQAVNTQRDLDEAKRKLLELEKENDSLNTEAIQVRKKNKR 408

Query: 61  LLRNIADLHEEMEAKKT 78
           LLRNIA+LHEE+EAKKT
Sbjct: 409 LLRNIANLHEEIEAKKT 425

The following BLAST results are available for this feature:

BLAST of MELO3C012680 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0049672.1	5.2e-31	100.00	uncharacterized protein E6C27_scaffold76G00070 [Cucumis melo var. makuwa]	[more]
TYK12200.1	5.2e-31	100.00	uncharacterized protein E5676_scaffold106G001510 [Cucumis melo var. makuwa]	[more]
TYK16834.1	6.3e-29	94.81	glial fibrillary acidic protein-like [Cucumis melo var. makuwa]	[more]
KAA0032013.1	6.3e-29	94.81	glial fibrillary acidic protein-like [Cucumis melo var. makuwa]	[more]
KAA0065294.1	6.3e-29	96.05	glial fibrillary acidic protein-like [Cucumis melo var. makuwa]	[more]

BLAST of MELO3C012680 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C012680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U1L8	2.5e-31	100.00	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5D3CLA9	2.5e-31	100.00	Retrotrans_gag domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 ...	[more]
A0A5A7VDD9	3.1e-29	96.05	Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5A7SNY0	3.1e-29	94.81	Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]
A0A5D3D0S2	3.1e-29	94.81	Glial fibrillary acidic protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E...	[more]

BLAST of MELO3C012680 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 9..77

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C012680.1	MELO3C012680.1	mRNA