MELO3C012648.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C012648.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	photosystem II D1 precursor processing protein PSB27-H2, chloroplastic
Location	chr01: 21033788 .. 21035952 (-)
RNA-Seq Expression	MELO3C012648.jh1
Synteny	MELO3C012648.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGTATATAGGCAGAAGAAAAGACCGCTCTCGCATATCCTCAAATTAAGAACTGGAGAAACCATTTCCATCTCCATCTCCATCTCCATCTCCATCTCCATTTCCATTTCCCAACTTATCCTCTTTCAGTTCATTTTCCCCAATTAGGTTTAAAATCTTTCTCTTCTTCTCCGGATTTTGCTTCCACCGATTCTACGCCGGTTCAGAACTTCATGCATTGCTGCCACAAAGTTAAGAATTAGGTATACACTTCCATCTCAGCTTCTTCTCCCTTTTCCTTATGCAACTTACTCCATCTTTGAACACTCCACAAGCCTTGAGGCGGTATCGACGGCTATTTATTGACTCACTTCTGTTTAATATTTTTTTTTTTATTGAATTTCATTGATTTTGTTTGTTTGTTTGTTTCTTTCGTAAATTGGCCATTTAATTCATGAGCAGAATCTACAGCAAGCTCAATTGTTCTTTAATTAGAACAGTTTTCTAGGTTTGGTTTTGTAATGGGAAGTTTTTTGTTTTATGATGAACCCACGATTAAACAGAATAAAGCTTTCTTTTCTGCAAGGGTATAGCTGGAGTAACTAAGAAGAACGAAGATGGCCGCATTTATTCAAGCAAAGATCTGCCCTAGGACTATTTCAACATTGGATAGAAGCTTAATAAGTGAAAATGGGCGTAAGTAACATCTCTTGTTTGTAAGCCCGTGAGTTAGCTTCTGTGTTGAATCTGAAACGTTGCCAAATATATTTGCAATTTATTTTTCTTAGCTGTTGGCCATTTATAGCATGTTTCAAGATTTTTTTGATGCTTGAAATATTCAAAATGTATTGCAGCGGAGGCTTTATTCCTGAATGCTGTATCATTCATACGTATTATAGGTCAAAACTCATTTTTAATTAGTAATAATCTTGTTCTTTCTTTGCAACAATTTGGCCCGTCCTACTATATTAATTTATAAATTGACTAGGGATCAAATTTGTTTACAAACTATGAAGACTAAATCATTATATTATACTAAACCTTGAAACATAATTTTTGACAAGATTTGGAAGTACAAGGACTAGTTAAAGTTTATGGATTGAATTATTACATGTAAGGAAGTTTAGAACAAGAGTATTTTTTAACCTATTTACAATTCTCTTGTTCTGAATCTGAATGCACCCAGACATAAGCTTCATTCTTGTACTATTTCTTTCTTGACCGTCTTATGCATCATAACAGGTAAACTACCATCCAGGTCTCAAGTAGCGCTTCCATCTCAAGAAATTTGTAGACGTCATTTGGTATGGAATGGCATGTCATTGGTTGTGTTTCTCACATTTAACAATGGATTGACACCATCTTCGGCCCACGCTGAAGAAATGCCAAATAACATGGAGGAAGAGGATAATGGAGTTATCGGGACGATCAAATCAATATTTGATCCAAATGAAAGAACCAAATCAGGGAAAGTATTGCCAAAGGCTTACTTGAAGTCTGCAAGGGAGGTGGTGAAGACACTGCGTGAGTCATTGCAGGAAGACCCCAAGGATGGTGCTAAATTTAGACGAACTGCAGATGCTGCAAAGGAATCCATTCGTGATTATTTAAGCAATTGGTTGGGGAAACAAACTCTTGTTCAAGAGGTATGACAAGGGAAAAACAGCTGATGCTACCTCATGAATGATGATCATAATGCCTTTATAATAACAACGCTCACTCACGTGCAGGAATCTTACGTTGTGTTGGAGAAAGCAATTAGGTCATTGGCAGGTTTTTATGCAAAGGCCGGGCCATCTGCGCCACTGCCAGAAGCTGTTAAATCGGATATTCTAGATGATTTGGATAAGGCTGAAGCATCCTTGTAAATGAAGAGCATTTTGAGGTCTAGATGAATATTTTTGTCAACATACTATTTCACCTCTTAGGTTTTGAGGTATTCAGCTACTTTTGTTGCTATTCTCCGCCAAAATGATCGTACAAAGGAATTTATTTTCAATGGATTGGGATTGAATTAGCATACACGGCTGCTCTTGTTTCTCACTTCACTTGTATAGTTGTATATCAGTTTTTTAGCGACATTGAAATGTATCAAATTTTGTTATAGAAGTACAATTTTGAACTGTCTAACATATGGATAAGCCATTTCTGTTCTAAAAAAGATATAGTAAGTAGAACATTTCAAAA

mRNA sequence

ATGTATATAGGCAGAAGAAAAGACCGCTCTCGCATATCCTCAAATTAAGAACTGGAGAAACCATTTCCATCTCCATCTCCATCTCCATCTCCATCTCCATTTCCATTTCCCAACTTATCCTCTTTCAGTTCATTTTCCCCAATTAGGTTTAAAATCTTTCTCTTCTTCTCCGGATTTTGCTTCCACCGATTCTACGCCGGTTCAGAACTTCATGCATTGCTGCCACAAAGTTAAGAATTAGCTTTCTTTTCTGCAAGGGTATAGCTGGAGTAACTAAGAAGAACGAAGATGGCCGCATTTATTCAAGCAAAGATCTGCCCTAGGACTATTTCAACATTGGATAGAAGCTTAATAAGTGAAAATGGGCGTAAACTACCATCCAGGTCTCAAGTAGCGCTTCCATCTCAAGAAATTTGTAGACGTCATTTGGTATGGAATGGCATGTCATTGGTTGTGTTTCTCACATTTAACAATGGATTGACACCATCTTCGGCCCACGCTGAAGAAATGCCAAATAACATGGAGGAAGAGGATAATGGAGTTATCGGGACGATCAAATCAATATTTGATCCAAATGAAAGAACCAAATCAGGGAAAGTATTGCCAAAGGCTTACTTGAAGTCTGCAAGGGAGGTGGTGAAGACACTGCGTGAGTCATTGCAGGAAGACCCCAAGGATGGTGCTAAATTTAGACGAACTGCAGATGCTGCAAAGGAATCCATTCGTGATTATTTAAGCAATTGGTTGGGGAAACAAACTCTTGTTCAAGAGGAATCTTACGTTGTGTTGGAGAAAGCAATTAGGTCATTGGCAGGTTTTTATGCAAAGGCCGGGCCATCTGCGCCACTGCCAGAAGCTGTTAAATCGGATATTCTAGATGATTTGGATAAGGCTGAAGCATCCTTGTAAATGAAGAGCATTTTGAGGTCTAGATGAATATTTTTGTCAACATACTATTTCACCTCTTAGGTTTTGAGGTATTCAGCTACTTTTGTTGCTATTCTCCGCCAAAATGATCGTACAAAGGAATTTATTTTCAATGGATTGGGATTGAATTAGCATACACGGCTGCTCTTGTTTCTCACTTCACTTGTATAGTTGTATATCAGTTTTTTAGCGACATTGAAATGTATCAAATTTTGTTATAGAAGTACAATTTTGAACTGTCTAACATATGGATAAGCCATTTCTGTTCTAAAAAAGATATAGTAAGTAGAACATTTCAAAA

Coding sequence (CDS)

ATGGCCGCATTTATTCAAGCAAAGATCTGCCCTAGGACTATTTCAACATTGGATAGAAGCTTAATAAGTGAAAATGGGCGTAAACTACCATCCAGGTCTCAAGTAGCGCTTCCATCTCAAGAAATTTGTAGACGTCATTTGGTATGGAATGGCATGTCATTGGTTGTGTTTCTCACATTTAACAATGGATTGACACCATCTTCGGCCCACGCTGAAGAAATGCCAAATAACATGGAGGAAGAGGATAATGGAGTTATCGGGACGATCAAATCAATATTTGATCCAAATGAAAGAACCAAATCAGGGAAAGTATTGCCAAAGGCTTACTTGAAGTCTGCAAGGGAGGTGGTGAAGACACTGCGTGAGTCATTGCAGGAAGACCCCAAGGATGGTGCTAAATTTAGACGAACTGCAGATGCTGCAAAGGAATCCATTCGTGATTATTTAAGCAATTGGTTGGGGAAACAAACTCTTGTTCAAGAGGAATCTTACGTTGTGTTGGAGAAAGCAATTAGGTCATTGGCAGGTTTTTATGCAAAGGCCGGGCCATCTGCGCCACTGCCAGAAGCTGTTAAATCGGATATTCTAGATGATTTGGATAAGGCTGAAGCATCCTTGTAA

Protein sequence

MAAFIQAKICPRTISTLDRSLISENGRKLPSRSQVALPSQEICRRHLVWNGMSLVVFLTFNNGLTPSSAHAEEMPNNMEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTLVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDLDKAEASL

Homology

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BLAST of MELO3C012648.jh1 vs. NCBI nr
Match: XP_008447146.1 (PREDICTED: photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucumis melo] >XP_008447147.1 PREDICTED: photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucumis melo] >XP_008447148.1 PREDICTED: photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Cucumis melo])

HSP 1 Score: 402 bits (1032), Expect = 5.03e-141
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 1   MAAFIQAKICPRTISTLDRSLISENGRKLPSRSQVALPSQEICRRHLVWNGMSLVVFLTF 60
           MAAFIQAKICPRTISTLDRSLISENGRKLPSRSQVALPSQEICRRHLVWNGMSLVVFLTF
Sbjct: 1   MAAFIQAKICPRTISTLDRSLISENGRKLPSRSQVALPSQEICRRHLVWNGMSLVVFLTF 60

Query: 61  NNGLTPSSAHAEEMPNNMEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120
           NNGLTPSSAHAEEMPNNMEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL
Sbjct: 61  NNGLTPSSAHAEEMPNNMEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120

Query: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTLVQEESYVVLEKAIRSLAGFYAK 180
           RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTLVQEESYVVLEKAIRSLAGFYAK
Sbjct: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTLVQEESYVVLEKAIRSLAGFYAK 180

Query: 181 AGPSAPLPEAVKSDILDDLDKAEASL 206
           AGPSAPLPEAVKSDILDDLDKAEASL
Sbjct: 181 AGPSAPLPEAVKSDILDDLDKAEASL 206

[Close]

BLAST of MELO3C012648.jh1 vs. NCBI nr
Match: KAA0040790.1 (photosystem II D1 precursor processing protein PSB27-H2 [Cucumis melo var. makuwa] >TYK17771.1 photosystem II D1 precursor processing protein PSB27-H2 [Cucumis melo var. makuwa])

HSP 1 Score: 400 bits (1027), Expect = 2.91e-140
Identity = 205/206 (99.51%), Postives = 205/206 (99.51%), Query Frame = 0


Query: 1   MAAFIQAKICPRTISTLDRSLISENGRKLPSRSQVALPSQEICRRHLVWNGMSLVVFLTF 60
           MAAFIQAKICPRTI TLDRSLISENGRKLPSRSQVALPSQEICRRHLVWNGMSLVVFLTF
Sbjct: 1   MAAFIQAKICPRTIPTLDRSLISENGRKLPSRSQVALPSQEICRRHLVWNGMSLVVFLTF 60

Query: 61  NNGLTPSSAHAEEMPNNMEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120
           NNGLTPSSAHAEEMPNNMEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL
Sbjct: 61  NNGLTPSSAHAEEMPNNMEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120

Query: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTLVQEESYVVLEKAIRSLAGFYAK 180
           RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTLVQEESYVVLEKAIRSLAGFYAK
Sbjct: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTLVQEESYVVLEKAIRSLAGFYAK 180

Query: 181 AGPSAPLPEAVKSDILDDLDKAEASL 206
           AGPSAPLPEAVKSDILDDLDKAEASL
Sbjct: 181 AGPSAPLPEAVKSDILDDLDKAEASL 206

[Close]

BLAST of MELO3C012648.jh1 vs. NCBI nr
Match: XP_011659022.1 (photosystem II D1 precursor processing protein PSB27-H2, chloroplastic isoform X1 [Cucumis sativus] >KGN44248.1 hypothetical protein Csa_016399 [Cucumis sativus])

HSP 1 Score: 379 bits (974), Expect = 3.50e-132
Identity = 193/206 (93.69%), Postives = 198/206 (96.12%), Query Frame = 0


Query: 1   MAAFIQAKICPRTISTLDRSLISENGRKLPSRSQVALPSQEICRRHLVWNGMSLVVFLTF 60
           MAAFI AKICP TISTLDRSLISE GRKLPSRS+V LP QE+CRRHLVWNGMSLVVFLTF
Sbjct: 1   MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTF 60

Query: 61  NNGLTPSSAHAEEMPNNMEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120
           NNGLTPSSA AEEMPNNMEEEDNGVIGTIKSIFDPNE+TKSGK+LPKAYLKSAREVVKTL
Sbjct: 61  NNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTKSGKILPKAYLKSAREVVKTL 120

Query: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTLVQEESYVVLEKAIRSLAGFYAK 180
           RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQT+VQEESYVVLEKAIRSLAGFYAK
Sbjct: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAK 180

Query: 181 AGPSAPLPEAVKSDILDDLDKAEASL 206
           AGPSAPLPEAVKSDILDDLDK E SL
Sbjct: 181 AGPSAPLPEAVKSDILDDLDKVEESL 206

[Close]

BLAST of MELO3C012648.jh1 vs. NCBI nr
Match: XP_011659023.1 (photosystem II D1 precursor processing protein PSB27-H2, chloroplastic isoform X2 [Cucumis sativus])

HSP 1 Score: 373 bits (957), Expect = 1.32e-129
Identity = 192/206 (93.20%), Postives = 197/206 (95.63%), Query Frame = 0


Query: 1   MAAFIQAKICPRTISTLDRSLISENGRKLPSRSQVALPSQEICRRHLVWNGMSLVVFLTF 60
           MAAFI AKICP TISTLDRSLISE G KLPSRS+V LP QE+CRRHLVWNGMSLVVFLTF
Sbjct: 1   MAAFIHAKICPTTISTLDRSLISEYG-KLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTF 60

Query: 61  NNGLTPSSAHAEEMPNNMEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120
           NNGLTPSSA AEEMPNNMEEEDNGVIGTIKSIFDPNE+TKSGK+LPKAYLKSAREVVKTL
Sbjct: 61  NNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTKSGKILPKAYLKSAREVVKTL 120

Query: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTLVQEESYVVLEKAIRSLAGFYAK 180
           RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQT+VQEESYVVLEKAIRSLAGFYAK
Sbjct: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAK 180

Query: 181 AGPSAPLPEAVKSDILDDLDKAEASL 206
           AGPSAPLPEAVKSDILDDLDK E SL
Sbjct: 181 AGPSAPLPEAVKSDILDDLDKVEESL 205

[Close]

BLAST of MELO3C012648.jh1 vs. NCBI nr
Match: XP_038875361.1 (photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Benincasa hispida] >XP_038875362.1 photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Benincasa hispida])

HSP 1 Score: 349 bits (895), Expect = 3.71e-120
Identity = 182/206 (88.35%), Postives = 193/206 (93.69%), Query Frame = 0


Query: 1   MAAFIQAKICPRTISTLDRSLISENGRKLPSRSQVALPSQEICRRHLVWNGMSLVVFLTF 60
           MAAFIQA ICP TISTLDR+L SENG KL SRSQV LPSQE+CRRHL+ +GMSLVVFLT 
Sbjct: 1   MAAFIQANICPTTISTLDRNLKSENGHKLRSRSQVVLPSQEVCRRHLMCSGMSLVVFLTC 60

Query: 61  NNGLTPSSAHAEEMPNNMEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120
           NNGLTPSSA AEE PN+ EEEDNGVIGTIKSIFDPNE+TKSGKVLPKAYLKSAREVVKTL
Sbjct: 61  NNGLTPSSARAEETPND-EEEDNGVIGTIKSIFDPNEKTKSGKVLPKAYLKSAREVVKTL 120

Query: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTLVQEESYVVLEKAIRSLAGFYAK 180
           RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLG++T+V+EESYVVLEKAI+SLAGFYAK
Sbjct: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGQRTVVREESYVVLEKAIKSLAGFYAK 180

Query: 181 AGPSAPLPEAVKSDILDDLDKAEASL 206
           AGPSAPLPEAVKSDILDDLDKAE  L
Sbjct: 181 AGPSAPLPEAVKSDILDDLDKAEEFL 205

[Close]

BLAST of MELO3C012648.jh1 vs. ExPASy Swiss-Prot
Match: Q9ZVZ9 (Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB27-2 PE=1 SV=1)

HSP 1 Score: 189.1 bits (479), Expect = 4.9e-47
Identity = 94/127 (74.02%), Postives = 111/127 (87.40%), Query Frame = 0


Query: 80  EEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTAD 139
           +E  GV+G  K++FDPNERTKSGK LPKAYLKSAREVVKT+RESL+E+PKD AKFRR+AD
Sbjct: 73  DEGEGVVGAFKTLFDPNERTKSGKELPKAYLKSAREVVKTMRESLKENPKDNAKFRRSAD 132

Query: 140 AAKESIRDYLSNWLGKQTLVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDL 199
           AAKESIRDYLSNW G++T+  EESYV LE  IR+LA FY+KAGPSAPLP+ VK++ILDDL
Sbjct: 133 AAKESIRDYLSNWRGQKTVAGEESYVELENVIRALAKFYSKAGPSAPLPDEVKTEILDDL 192

Query: 200 DKAEASL 207
           +KAE  L
Sbjct: 193 NKAEEFL 199

[Close]

BLAST of MELO3C012648.jh1 vs. ExPASy Swiss-Prot
Match: P74367 (Photosystem II lipoprotein Psb27 OS=Synechocystis sp. (strain PCC 6803 / Kazusa) OX=1111708 GN=psb27 PE=1 SV=2)

HSP 1 Score: 52.4 bits (124), Expect = 7.2e-06
Identity = 33/106 (31.13%), Postives = 56/106 (52.83%), Query Frame = 0


Query: 101 SGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTLVQ 160
           SG  L   Y +    V+ TLRE++ + P+D    +   D A+  I DY+S +  K     
Sbjct: 27  SGTGLTGNYSQDTLTVIATLREAI-DLPQDAPNRQEVQDTARGQINDYISRYRRKGDAGG 86

Query: 161 EESYVVLEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDLDKAEASL 207
            +S+  ++ A+ SLAG+Y   G + P+PE +K  +  +  +AE S+
Sbjct: 87  LKSFTTMQTALNSLAGYYTSYG-ARPIPEKLKKRLQLEFTQAERSI 130

[Close]

BLAST of MELO3C012648.jh1 vs. ExPASy Swiss-Prot
Match: Q9LR64 (Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana OX=3702 GN=PSB27-1 PE=1 SV=1)

HSP 1 Score: 47.0 bits (110), Expect = 3.0e-04
Identity = 29/102 (28.43%), Postives = 55/102 (53.92%), Query Frame = 0


Query: 109 YLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGK----QTLVQEESY 168
           Y+K    V+  +R +L     D       ADA  E +R+  ++W+ K    + L+ + S+
Sbjct: 74  YIKDTSAVISKVRSTLSMQKTD----PNVADAVAE-LREASNSWVAKYRKEKALLGKASF 133

Query: 169 VVLEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDLDKAEASL 207
             +  A+ +++G Y   GP+AP+P   K+ IL++++ AE +L
Sbjct: 134 RDIYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKAL 170

[Close]

BLAST of MELO3C012648.jh1 vs. ExPASy TrEMBL
Match: A0A1S3BG68 (photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Cucumis melo OX=3656 GN=LOC103489666 PE=3 SV=1)

HSP 1 Score: 402 bits (1032), Expect = 2.43e-141
Identity = 206/206 (100.00%), Postives = 206/206 (100.00%), Query Frame = 0


Query: 1   MAAFIQAKICPRTISTLDRSLISENGRKLPSRSQVALPSQEICRRHLVWNGMSLVVFLTF 60
           MAAFIQAKICPRTISTLDRSLISENGRKLPSRSQVALPSQEICRRHLVWNGMSLVVFLTF
Sbjct: 1   MAAFIQAKICPRTISTLDRSLISENGRKLPSRSQVALPSQEICRRHLVWNGMSLVVFLTF 60

Query: 61  NNGLTPSSAHAEEMPNNMEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120
           NNGLTPSSAHAEEMPNNMEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL
Sbjct: 61  NNGLTPSSAHAEEMPNNMEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120

Query: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTLVQEESYVVLEKAIRSLAGFYAK 180
           RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTLVQEESYVVLEKAIRSLAGFYAK
Sbjct: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTLVQEESYVVLEKAIRSLAGFYAK 180

Query: 181 AGPSAPLPEAVKSDILDDLDKAEASL 206
           AGPSAPLPEAVKSDILDDLDKAEASL
Sbjct: 181 AGPSAPLPEAVKSDILDDLDKAEASL 206

[Close]

BLAST of MELO3C012648.jh1 vs. ExPASy TrEMBL
Match: A0A5D3D0K6 (Photosystem II D1 processing protein PSB27-H2 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold306G00120 PE=3 SV=1)

HSP 1 Score: 400 bits (1027), Expect = 1.41e-140
Identity = 205/206 (99.51%), Postives = 205/206 (99.51%), Query Frame = 0


Query: 1   MAAFIQAKICPRTISTLDRSLISENGRKLPSRSQVALPSQEICRRHLVWNGMSLVVFLTF 60
           MAAFIQAKICPRTI TLDRSLISENGRKLPSRSQVALPSQEICRRHLVWNGMSLVVFLTF
Sbjct: 1   MAAFIQAKICPRTIPTLDRSLISENGRKLPSRSQVALPSQEICRRHLVWNGMSLVVFLTF 60

Query: 61  NNGLTPSSAHAEEMPNNMEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120
           NNGLTPSSAHAEEMPNNMEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL
Sbjct: 61  NNGLTPSSAHAEEMPNNMEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120

Query: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTLVQEESYVVLEKAIRSLAGFYAK 180
           RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTLVQEESYVVLEKAIRSLAGFYAK
Sbjct: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTLVQEESYVVLEKAIRSLAGFYAK 180

Query: 181 AGPSAPLPEAVKSDILDDLDKAEASL 206
           AGPSAPLPEAVKSDILDDLDKAEASL
Sbjct: 181 AGPSAPLPEAVKSDILDDLDKAEASL 206

[Close]

BLAST of MELO3C012648.jh1 vs. ExPASy TrEMBL
Match: A0A0A0K400 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G234690 PE=3 SV=1)

HSP 1 Score: 379 bits (974), Expect = 1.69e-132
Identity = 193/206 (93.69%), Postives = 198/206 (96.12%), Query Frame = 0


Query: 1   MAAFIQAKICPRTISTLDRSLISENGRKLPSRSQVALPSQEICRRHLVWNGMSLVVFLTF 60
           MAAFI AKICP TISTLDRSLISE GRKLPSRS+V LP QE+CRRHLVWNGMSLVVFLTF
Sbjct: 1   MAAFIHAKICPTTISTLDRSLISEYGRKLPSRSRVVLPYQEVCRRHLVWNGMSLVVFLTF 60

Query: 61  NNGLTPSSAHAEEMPNNMEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120
           NNGLTPSSA AEEMPNNMEEEDNGVIGTIKSIFDPNE+TKSGK+LPKAYLKSAREVVKTL
Sbjct: 61  NNGLTPSSAQAEEMPNNMEEEDNGVIGTIKSIFDPNEKTKSGKILPKAYLKSAREVVKTL 120

Query: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTLVQEESYVVLEKAIRSLAGFYAK 180
           RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQT+VQEESYVVLEKAIRSLAGFYAK
Sbjct: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTVVQEESYVVLEKAIRSLAGFYAK 180

Query: 181 AGPSAPLPEAVKSDILDDLDKAEASL 206
           AGPSAPLPEAVKSDILDDLDK E SL
Sbjct: 181 AGPSAPLPEAVKSDILDDLDKVEESL 206

[Close]

BLAST of MELO3C012648.jh1 vs. ExPASy TrEMBL
Match: A0A6J1H448 (photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Cucurbita moschata OX=3662 GN=LOC111459969 PE=3 SV=1)

HSP 1 Score: 333 bits (854), Expect = 3.17e-114
Identity = 175/206 (84.95%), Postives = 183/206 (88.83%), Query Frame = 0


Query: 1   MAAFIQAKICPRTISTLDRSLISENGRKLPSRSQVALPSQEICRRHLVWNGMSLVVFLTF 60
           M AFIQAKICP TISTLDR + SENG KL SRSQV LPSQE+CRR L+ NGMS V FLTF
Sbjct: 1   MTAFIQAKICPATISTLDR-ISSENGHKLRSRSQVVLPSQELCRRDLLCNGMSFVAFLTF 60

Query: 61  NNGLTPSSAHAEEMPNNMEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120
           NN LTP  A AEEMPN+ EEE+NGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL
Sbjct: 61  NNALTPLLARAEEMPNDKEEEENGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120

Query: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTLVQEESYVVLEKAIRSLAGFYAK 180
           RESLQED KDGAKFRRTADAAKESIRDYL NWLG+Q +VQEESY VLEKAIRSLAGFYAK
Sbjct: 121 RESLQEDSKDGAKFRRTADAAKESIRDYLGNWLGQQAVVQEESYAVLEKAIRSLAGFYAK 180

Query: 181 AGPSAPLPEAVKSDILDDLDKAEASL 206
           AGPSAPLPE VKSDIL+DLDKAE  L
Sbjct: 181 AGPSAPLPEDVKSDILNDLDKAEEFL 205

[Close]

BLAST of MELO3C012648.jh1 vs. ExPASy TrEMBL
Match: A0A6J1CCV0 (photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Momordica charantia OX=3673 GN=LOC111009571 PE=3 SV=1)

HSP 1 Score: 330 bits (846), Expect = 5.43e-113
Identity = 170/206 (82.52%), Postives = 182/206 (88.35%), Query Frame = 0


Query: 1   MAAFIQAKICPRTISTLDRSLISENGRKLPSRSQVALPSQEICRRHLVWNGMSLVVFLTF 60
           MAAF+QAKICPRT S+LDR   SENG KL SRSQV LPSQE+CRR L+ NGMSLVVFL F
Sbjct: 1   MAAFMQAKICPRTTSSLDRIFRSENGDKLRSRSQVVLPSQEVCRRQLLCNGMSLVVFLAF 60

Query: 61  NNGLTPSSAHAEEMPNNMEEEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTL 120
           NNG  P  A AEE PN+ +EEDNGV+G IKSIFDPNERTKSGKVLPKAYLKSARE+VKTL
Sbjct: 61  NNGSMPLLARAEETPNDKQEEDNGVVGVIKSIFDPNERTKSGKVLPKAYLKSARELVKTL 120

Query: 121 RESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGKQTLVQEESYVVLEKAIRSLAGFYAK 180
           RES+QEDPKDGAKFRRTADAAKESIRDYLSNWLG+QT+ QEESY  LEKAIRSLA FYAK
Sbjct: 121 RESVQEDPKDGAKFRRTADAAKESIRDYLSNWLGQQTVAQEESYAELEKAIRSLASFYAK 180

Query: 181 AGPSAPLPEAVKSDILDDLDKAEASL 206
           AGPSAPLPEAVKSDIL+DLDKAE  L
Sbjct: 181 AGPSAPLPEAVKSDILNDLDKAEEFL 206

[Close]

BLAST of MELO3C012648.jh1 vs. TAIR 10
Match: AT1G05385.1 (photosystem II 11 kDa protein-related )

HSP 1 Score: 189.1 bits (479), Expect = 3.5e-48
Identity = 94/127 (74.02%), Postives = 111/127 (87.40%), Query Frame = 0


Query: 80  EEDNGVIGTIKSIFDPNERTKSGKVLPKAYLKSAREVVKTLRESLQEDPKDGAKFRRTAD 139
           +E  GV+G  K++FDPNERTKSGK LPKAYLKSAREVVKT+RESL+E+PKD AKFRR+AD
Sbjct: 73  DEGEGVVGAFKTLFDPNERTKSGKELPKAYLKSAREVVKTMRESLKENPKDNAKFRRSAD 132

Query: 140 AAKESIRDYLSNWLGKQTLVQEESYVVLEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDL 199
           AAKESIRDYLSNW G++T+  EESYV LE  IR+LA FY+KAGPSAPLP+ VK++ILDDL
Sbjct: 133 AAKESIRDYLSNWRGQKTVAGEESYVELENVIRALAKFYSKAGPSAPLPDEVKTEILDDL 192

Query: 200 DKAEASL 207
           +KAE  L
Sbjct: 193 NKAEEFL 199

[Close]

BLAST of MELO3C012648.jh1 vs. TAIR 10
Match: AT1G03600.1 (photosystem II family protein )

HSP 1 Score: 47.0 bits (110), Expect = 2.1e-05
Identity = 29/102 (28.43%), Postives = 55/102 (53.92%), Query Frame = 0


Query: 109 YLKSAREVVKTLRESLQEDPKDGAKFRRTADAAKESIRDYLSNWLGK----QTLVQEESY 168
           Y+K    V+  +R +L     D       ADA  E +R+  ++W+ K    + L+ + S+
Sbjct: 74  YIKDTSAVISKVRSTLSMQKTD----PNVADAVAE-LREASNSWVAKYRKEKALLGKASF 133

Query: 169 VVLEKAIRSLAGFYAKAGPSAPLPEAVKSDILDDLDKAEASL 207
             +  A+ +++G Y   GP+AP+P   K+ IL++++ AE +L
Sbjct: 134 RDIYSALNAVSGHYVSFGPTAPIPAKRKARILEEMETAEKAL 170

The following BLAST results are available for this feature:

BLAST of MELO3C012648.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008447146.1	5.03e-141	100.00	PREDICTED: photosystem II D1 precursor processing protein PSB27-H2, chloroplasti...	[more]
KAA0040790.1	2.91e-140	99.51	photosystem II D1 precursor processing protein PSB27-H2 [Cucumis melo var. makuw...	[more]
XP_011659022.1	3.50e-132	93.69	photosystem II D1 precursor processing protein PSB27-H2, chloroplastic isoform X...	[more]
XP_011659023.1	1.32e-129	93.20	photosystem II D1 precursor processing protein PSB27-H2, chloroplastic isoform X...	[more]
XP_038875361.1	3.71e-120	88.35	photosystem II D1 precursor processing protein PSB27-H2, chloroplastic [Benincas...	[more]

BLAST of MELO3C012648.jh1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9ZVZ9	4.9e-47	74.02	Photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Arabid...	[more]
P74367	7.2e-06	31.13	Photosystem II lipoprotein Psb27 OS=Synechocystis sp. (strain PCC 6803 / Kazusa)...	[more]
Q9LR64	3.0e-04	28.43	Photosystem II repair protein PSB27-H1, chloroplastic OS=Arabidopsis thaliana OX...	[more]

BLAST of MELO3C012648.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BG68	2.43e-141	100.00	photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Cucumi...	[more]
A0A5D3D0K6	1.41e-140	99.51	Photosystem II D1 processing protein PSB27-H2 OS=Cucumis melo var. makuwa OX=119...	[more]
A0A0A0K400	1.69e-132	93.69	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_7G234690 PE=3 SV=1	[more]
A0A6J1H448	3.17e-114	84.95	photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Cucurb...	[more]
A0A6J1CCV0	5.43e-113	82.52	photosystem II D1 precursor processing protein PSB27-H2, chloroplastic OS=Momord...	[more]

BLAST of MELO3C012648.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G05385.1	3.5e-48	74.02	photosystem II 11 kDa protein-related	[more]
AT1G03600.1	2.1e-05	28.43	photosystem II family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 192..206
None	No IPR available	PANTHER	PTHR34041:SF3	PHOTOSYSTEM II D1 PRECURSOR PROCESSING PROTEIN PSB27-H2, CHLOROPLASTIC	coord: 22..206
IPR038450	Photosystem II Pbs27 superfamily	GENE3D	1.20.58.810	Photosystem II Pbs27	coord: 98..206 e-value: 2.1E-29 score: 104.0
IPR025585	Photosystem II Pbs27	PFAM	PF13326	PSII_Pbs27	coord: 44..206 e-value: 4.3E-46 score: 156.7
IPR025585	Photosystem II Pbs27	PANTHER	PTHR34041	PHOTOSYSTEM II REPAIR PROTEIN PSB27-H1, CHLOROPLASTIC	coord: 22..206
IPR025585	Photosystem II Pbs27	HAMAP	MF_01481	PSII_Psb27	coord: 80..206 score: 20.50098

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C012648.jh1.t1	MELO3C012648.jh1.t1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
biological_process	GO:0010207	photosystem II assembly
biological_process	GO:0010206	photosystem II repair
cellular_component	GO:0009523	photosystem II