MELO3C012637 (gene) Melon (DHL92) v4

Overview


Name	MELO3C012637
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotransposon protein
Location	chr06: 35124585 .. 35125567 (-)
RNA-Seq Expression	MELO3C012637
Synteny	MELO3C012637

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CGAGGACCGAAACACACATGGATTAAAGAGAAAGAAGCAAAACTGGTTAAGTGTTTGGTCGAATTGGTTTCAACTGGTGGATGAAGGTTCGATAATGGGACATTTCGACCTGGGTACTTGGCCCAAAATAATGAATGATGGCAGAGAAGTTGCCCGACACTAATATCCAAGGATCGCCCATGATAAATTGTCATGTGAAATCTCTTAAAGAAAACCTATCAAGCAATTGCAGAAATGAGGGGACCATCATGTAGTGGCTTTGGATGGAATGAAGAATTCCAATGCATCGTCGCATACGAGAGTTGTTTGGTAGTTGGGTAAAGGTAAATTTCACAATACAATTGTACATACTTTTTATTATCACAATCGTGAACTCATCTGCCTAAATTAAATTTCTACAGAGTCATCCTGCAACCAAAGGCCTTCTACATAAATCATTTCCATATTATGATGATCTATCTTATGTCTTTGACAAAGATCAAACAACAGGAGCACGTTCAGAGACCTTCGTTGATGCAGGATCTAATGTGCCGAACATGTTTAATGATGGTGTTCCCCTCAGTAATTCACATCATGAAGATATCCCGACGATATACAGCCAAGGAGTGCATATGTCACTAGATAAGATGTTCGGAACACGTGCAGGTCAAGTAAGTGAGAGAAAAAATTGTTCAAGTGGAAGTAAGAGGAAACGAGGTGGCCAACATTATGAAATGGTAGAGGTGATCAGGAGTGCAATGGAATTTGAAAATGATCAATTAAAGGCAATTGCAGATTGGCCAAAAGAGAAAACGTGCAACGGAGGTCGAATTGCATGCTGAAGTTGTGAAACAGCTACAAATATCCCTAAACTACGAAGCCGAGATAAGGCAAAGCTTATGCAAATCCTATTCCGTAGTGTGGAGGGCATTGATGGATTCTTGTCGATTCCAACAAAACTTAAATTAGAGTATTGCAATGTTCTCTTGGAAAATAATGTTTGA

mRNA sequence

CGAGGACCGAAACACACATGGATTAAAGAGAAAGAAGCAAAACTGGTTAAGTGTTTGGTCGAATTGGTTTCAACTGGTGGATGAAGGTTCGATAATGGGACATTTCGACCTGGGTACTTGGCCCAAAATAATGAATGATGGCAGAGAAGTTGCCCGACACTAATATCCAAGGATCGCCCATGATAAATTGTCATGTGAAATCTCTTAAAGAAAACCTATCAAGCAATTGCAGAAATGAGGGGACCATCATGTAGTGGCTTTGGATGGAATGAAGAATTCCAATGCATCGTCGCATACGAGAGTTGTTTGGTAGTTGGGTAAAGAGTCATCCTGCAACCAAAGGCCTTCTACATAAATCATTTCCATATTATGATGATCTATCTTATGTCTTTGACAAAGATCAAACAACAGGAGCACGTTCAGAGACCTTCGTTGATGCAGGATCTAATGTGCCGAACATGTTTAATGATGGTGTTCCCCTCAGTAATTCACATCATGAAGATATCCCGACGATATACAGCCAAGGAGTGCATATGTCACTAGATAAGATGTTCGGAACACGTGCAGGTCAAGTAAGTGAGAGAAAAAATTGTTCAAGTGGAAGTAAGAGGAAACGAGGTGGCCAACATTATGAAATGGTAGAGGTGATCAGGAGTGCAATGGAATTTGAAAATGATCAATTAAAGGCAATTGCAGATTGGCCAAAAGAGAAAACGTGCAACGGAGGTCGAATTGCATGCTGAAGTTGTGAAACAGCTACAAATATCCCTAAACTACGAAGCCGAGATAAGGCAAAGCTTATGCAAATCCTATTCCGTAGTGTGGAGGGCATTGATGGATTCTTGTCGATTCCAACAAAACTTAAATTAGAGTATTGCAATGTTCTCTTGGAAAATAATGTTTGA

Coding sequence (CDS)

ATGCATCGTCGCATACGAGAGTTGTTTGGTAGTTGGGTAAAGAGTCATCCTGCAACCAAAGGCCTTCTACATAAATCATTTCCATATTATGATGATCTATCTTATGTCTTTGACAAAGATCAAACAACAGGAGCACGTTCAGAGACCTTCGTTGATGCAGGATCTAATGTGCCGAACATGTTTAATGATGGTGTTCCCCTCAGTAATTCACATCATGAAGATATCCCGACGATATACAGCCAAGGAGTGCATATGTCACTAGATAAGATGTTCGGAACACGTGCAGGTCAAGTAAGTGAGAGAAAAAATTGTTCAAGTGGAAGTAAGAGGAAACGAGGTGGCCAACATTATGAAATGGTAGAGGTGATCAGGAGTGCAATGGAATTTGAAAATGATCAATTAAAGGCAATTGCAGATTGGCCAAAAGAGAAAACGTGCAACGGAGGTCGAATTGCATGCTGA

Protein sequence

MHRRIRELFGSWVKSHPATKGLLHKSFPYYDDLSYVFDKDQTTGARSETFVDAGSNVPNMFNDGVPLSNSHHEDIPTIYSQGVHMSLDKMFGTRAGQVSERKNCSSGSKRKRGGQHYEMVEVIRSAMEFENDQLKAIADWPKEKTCNGGRIAC

Homology

[Close]

BLAST of MELO3C012637 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 230.7 bits (587), Expect = 8.4e-57
Identity = 109/139 (78.42%), Postives = 120/139 (86.33%), Query Frame = 0


Query: 6   RELFGSWVKSHPATKGLLHKSFPYYDDLSYVFDKDQTTGARSETFVDAGSNVPNMFNDGV 65
           R+LF SW+KSHPA KGLLHKSFPYYDDLSYVF KD+ TGARSETF + GSNV NMFND +
Sbjct: 105 RDLFDSWIKSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTI 164

Query: 66  PLSNSHHEDIPTIYSQGVHMSLDKMFGTRAGQVSERKNCSSGSKRKRGGQHYEMVEVIRS 125
           PL +SH EDIPT+YSQGVHMS D+MFG RAGQ SER+NCSS SKRKRG + YE VEVIRS
Sbjct: 165 PLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRS 224

Query: 126 AMEFENDQLKAIADWPKEK 145
            MEF N+QLKAIADWPKEK
Sbjct: 225 VMEFGNEQLKAIADWPKEK 243

[Close]

BLAST of MELO3C012637 vs. NCBI nr
Match: KAA0042340.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK15465.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 228.8 bits (582), Expect = 3.2e-56
Identity = 108/136 (79.41%), Postives = 119/136 (87.50%), Query Frame = 0


Query: 9   FGSWVKSHPATKGLLHKSFPYYDDLSYVFDKDQTTGARSETFVDAGSNVPNMFNDGVPLS 68
           F  W++SHP  KGLL+KSFPYYDD+SYVF KDQ T ARSETF D GSN+PNMFNDGVPL 
Sbjct: 7   FSWWLESHPTVKGLLNKSFPYYDDVSYVFGKDQATEARSETFADVGSNIPNMFNDGVPLG 66

Query: 69  NSHHEDIPTIYSQGVHMSLDKMFGTRAGQVSERKNCSSGSKRKRGGQHYEMVEVIRSAME 128
           +SHHEDIPT+YSQGV MSLD+MFGTRAGQ SER+NCSS SKRK+G QHYE VEVIRSAM+
Sbjct: 67  DSHHEDIPTMYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYETVEVIRSAMK 126

Query: 129 FENDQLKAIADWPKEK 145
           F NDQLKAIADW KEK
Sbjct: 127 FGNDQLKAIADWLKEK 142

[Close]

BLAST of MELO3C012637 vs. NCBI nr
Match: KAA0056515.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK12085.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 220.7 bits (561), Expect = 8.7e-54
Identity = 105/137 (76.64%), Postives = 117/137 (85.40%), Query Frame = 0


Query: 8   LFGSWVKSHPATKGLLHKSFPYYDDLSYVFDKDQTTGARSETFVDAGSNVPNMFNDGVPL 67
           L G W  SHPA KGLLHKSFPYYDDLSYVF KD+ T  RSETF   GSNVPNMFNDGVPL
Sbjct: 164 LKGRW--SHPAAKGLLHKSFPYYDDLSYVFGKDRATKERSETFSGVGSNVPNMFNDGVPL 223

Query: 68  SNSHHEDIPTIYSQGVHMSLDKMFGTRAGQVSERKNCSSGSKRKRGGQHYEMVEVIRSAM 127
            +SH++DIP +YSQGVHMS+D+MFG RAGQ SER+NCSSGSKRKRG +HYEMVEVIRS M
Sbjct: 224 GDSHNQDIPMMYSQGVHMSIDEMFGIRAGQASERRNCSSGSKRKRGSKHYEMVEVIRSVM 283

Query: 128 EFENDQLKAIADWPKEK 145
           +F N+QLK IADWPK+K
Sbjct: 284 KFGNNQLKTIADWPKKK 298

[Close]

BLAST of MELO3C012637 vs. NCBI nr
Match: KAA0031678.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 215.3 bits (547), Expect = 3.6e-52
Identity = 103/131 (78.63%), Postives = 111/131 (84.73%), Query Frame = 0


Query: 14  KSHPATKGLLHKSFPYYDDLSYVFDKDQTTGARSETFVDAGSNVPNMFNDGVPLSNSHHE 73
           +SHPA KGLLHKSFPYYDDLSYVF  D  TGA SETF D GSNV NMFNDGVPL +SH++
Sbjct: 70  RSHPAAKGLLHKSFPYYDDLSYVFGNDGATGAHSETFADGGSNVSNMFNDGVPLGDSHNQ 129

Query: 74  DIPTIYSQGVHMSLDKMFGTRAGQVSERKNCSSGSKRKRGGQHYEMVEVIRSAMEFENDQ 133
           DI TIYSQGVHMSLD++FG RAGQ SER+N SSGSKRKRG +HYEMVEVI SA EF NDQ
Sbjct: 130 DILTIYSQGVHMSLDEIFGIRAGQASERRNYSSGSKRKRGSKHYEMVEVISSATEFGNDQ 189

Query: 134 LKAIADWPKEK 145
           LK I DWPKEK
Sbjct: 190 LKTITDWPKEK 200

[Close]

BLAST of MELO3C012637 vs. NCBI nr
Match: KAA0033290.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 204.1 bits (518), Expect = 8.4e-49
Identity = 98/127 (77.17%), Postives = 108/127 (85.04%), Query Frame = 0


Query: 18  ATKGLLHKSFPYYDDLSYVFDKDQTTGARSETFVDAGSNVPNMFNDGVPLSNSHHEDIPT 77
           A K LLHKSFPYYDDL YVF KD+ T ARSETF D GSNVPNMFN  VPL +SH +DIP 
Sbjct: 310 APKDLLHKSFPYYDDLFYVFGKDRATRARSETFADVGSNVPNMFNGDVPLDDSHDQDIPM 369

Query: 78  IYSQGVHMSLDKMFGTRAGQVSERKNCSSGSKRKRGGQHYEMVEVIRSAMEFENDQLKAI 137
           +YSQGVHMS D+MFG RAGQ SERKNCSSGSKRK+G +HYE VEVI+SA+EF NDQLKAI
Sbjct: 370 MYSQGVHMSPDEMFGIRAGQASERKNCSSGSKRKQGSKHYETVEVIKSAIEFGNDQLKAI 429

Query: 138 ADWPKEK 145
           A+WPKEK
Sbjct: 430 ANWPKEK 436

[Close]

BLAST of MELO3C012637 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 4.1e-57
Identity = 109/139 (78.42%), Postives = 120/139 (86.33%), Query Frame = 0


Query: 6   RELFGSWVKSHPATKGLLHKSFPYYDDLSYVFDKDQTTGARSETFVDAGSNVPNMFNDGV 65
           R+LF SW+KSHPA KGLLHKSFPYYDDLSYVF KD+ TGARSETF + GSNV NMFND +
Sbjct: 105 RDLFDSWIKSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTI 164

Query: 66  PLSNSHHEDIPTIYSQGVHMSLDKMFGTRAGQVSERKNCSSGSKRKRGGQHYEMVEVIRS 125
           PL +SH EDIPT+YSQGVHMS D+MFG RAGQ SER+NCSS SKRKRG + YE VEVIRS
Sbjct: 165 PLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRS 224

Query: 126 AMEFENDQLKAIADWPKEK 145
            MEF N+QLKAIADWPKEK
Sbjct: 225 VMEFGNEQLKAIADWPKEK 243

[Close]

BLAST of MELO3C012637 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 230.7 bits (587), Expect = 4.1e-57
Identity = 109/139 (78.42%), Postives = 120/139 (86.33%), Query Frame = 0


Query: 6   RELFGSWVKSHPATKGLLHKSFPYYDDLSYVFDKDQTTGARSETFVDAGSNVPNMFNDGV 65
           R+LF SW+KSHPA KGLLHKSFPYYDDLSYVF KD+ TGARSETF + GSNV NMFND +
Sbjct: 105 RDLFDSWIKSHPAAKGLLHKSFPYYDDLSYVFGKDRATGARSETFPNVGSNVSNMFNDTI 164

Query: 66  PLSNSHHEDIPTIYSQGVHMSLDKMFGTRAGQVSERKNCSSGSKRKRGGQHYEMVEVIRS 125
           PL +SH EDIPT+YSQGVHMS D+MFG RAGQ SER+NCSS SKRKRG + YE VEVIRS
Sbjct: 165 PLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYETVEVIRS 224

Query: 126 AMEFENDQLKAIADWPKEK 145
            MEF N+QLKAIADWPKEK
Sbjct: 225 VMEFGNEQLKAIADWPKEK 243

[Close]

BLAST of MELO3C012637 vs. ExPASy TrEMBL
Match: A0A5D3CVB7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold477G00360 PE=4 SV=1)

HSP 1 Score: 228.8 bits (582), Expect = 1.5e-56
Identity = 108/136 (79.41%), Postives = 119/136 (87.50%), Query Frame = 0


Query: 9   FGSWVKSHPATKGLLHKSFPYYDDLSYVFDKDQTTGARSETFVDAGSNVPNMFNDGVPLS 68
           F  W++SHP  KGLL+KSFPYYDD+SYVF KDQ T ARSETF D GSN+PNMFNDGVPL 
Sbjct: 7   FSWWLESHPTVKGLLNKSFPYYDDVSYVFGKDQATEARSETFADVGSNIPNMFNDGVPLG 66

Query: 69  NSHHEDIPTIYSQGVHMSLDKMFGTRAGQVSERKNCSSGSKRKRGGQHYEMVEVIRSAME 128
           +SHHEDIPT+YSQGV MSLD+MFGTRAGQ SER+NCSS SKRK+G QHYE VEVIRSAM+
Sbjct: 67  DSHHEDIPTMYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYETVEVIRSAMK 126

Query: 129 FENDQLKAIADWPKEK 145
           F NDQLKAIADW KEK
Sbjct: 127 FGNDQLKAIADWLKEK 142

[Close]

BLAST of MELO3C012637 vs. ExPASy TrEMBL
Match: A0A5A7USN6 (Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold106G00100 PE=3 SV=1)

HSP 1 Score: 220.7 bits (561), Expect = 4.2e-54
Identity = 105/137 (76.64%), Postives = 117/137 (85.40%), Query Frame = 0


Query: 8   LFGSWVKSHPATKGLLHKSFPYYDDLSYVFDKDQTTGARSETFVDAGSNVPNMFNDGVPL 67
           L G W  SHPA KGLLHKSFPYYDDLSYVF KD+ T  RSETF   GSNVPNMFNDGVPL
Sbjct: 164 LKGRW--SHPAAKGLLHKSFPYYDDLSYVFGKDRATKERSETFSGVGSNVPNMFNDGVPL 223

Query: 68  SNSHHEDIPTIYSQGVHMSLDKMFGTRAGQVSERKNCSSGSKRKRGGQHYEMVEVIRSAM 127
            +SH++DIP +YSQGVHMS+D+MFG RAGQ SER+NCSSGSKRKRG +HYEMVEVIRS M
Sbjct: 224 GDSHNQDIPMMYSQGVHMSIDEMFGIRAGQASERRNCSSGSKRKRGSKHYEMVEVIRSVM 283

Query: 128 EFENDQLKAIADWPKEK 145
           +F N+QLK IADWPK+K
Sbjct: 284 KFGNNQLKTIADWPKKK 298

[Close]

BLAST of MELO3C012637 vs. ExPASy TrEMBL
Match: A0A5D3BZU3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00280 PE=4 SV=1)

HSP 1 Score: 215.3 bits (547), Expect = 1.8e-52
Identity = 103/131 (78.63%), Postives = 111/131 (84.73%), Query Frame = 0


Query: 14  KSHPATKGLLHKSFPYYDDLSYVFDKDQTTGARSETFVDAGSNVPNMFNDGVPLSNSHHE 73
           +SHPA KGLLHKSFPYYDDLSYVF  D  TGA SETF D GSNV NMFNDGVPL +SH++
Sbjct: 70  RSHPAAKGLLHKSFPYYDDLSYVFGNDGATGAHSETFADGGSNVSNMFNDGVPLGDSHNQ 129

Query: 74  DIPTIYSQGVHMSLDKMFGTRAGQVSERKNCSSGSKRKRGGQHYEMVEVIRSAMEFENDQ 133
           DI TIYSQGVHMSLD++FG RAGQ SER+N SSGSKRKRG +HYEMVEVI SA EF NDQ
Sbjct: 130 DILTIYSQGVHMSLDEIFGIRAGQASERRNYSSGSKRKRGSKHYEMVEVISSATEFGNDQ 189

Query: 134 LKAIADWPKEK 145
           LK I DWPKEK
Sbjct: 190 LKTITDWPKEK 200

The following BLAST results are available for this feature:

BLAST of MELO3C012637 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008441954.1	8.4e-57	78.42	PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret...	[more]
KAA0042340.1	3.2e-56	79.41	retrotransposon protein [Cucumis melo var. makuwa] >TYK15465.1 retrotransposon p...	[more]
KAA0056515.1	8.7e-54	76.64	putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK12085.1 putative nucleas...	[more]
KAA0031678.1	3.6e-52	78.63	retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon p...	[more]
KAA0033290.1	8.4e-49	77.17	putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nucleas...	[more]

BLAST of MELO3C012637 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C012637 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7U0H7	4.1e-57	78.42	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3B4L3	4.1e-57	78.42	uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=...	[more]
A0A5D3CVB7	1.5e-56	79.41	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7USN6	4.2e-54	76.64	Putative nuclease HARBI1 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffol...	[more]
A0A5D3BZU3	1.8e-52	78.63	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MELO3C012637 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	PANTHER	PTHR46250	MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATED	coord: 7..115

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C012637.1	MELO3C012637.1	mRNA