MELO3C012498.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C012498.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Descriptionprotein RADIALIS-like 3
Locationchr01: 17798388 .. 17800536 (-)
RNA-Seq ExpressionMELO3C012498.jh1
SyntenyMELO3C012498.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSstart_codonstop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
TTTATCCAATGGCTTCGAGCTCTTTGAAGCAGCAACGACCGGAGACGACGTGGACGCCAAAGCAAAACAAGCTGTTCGAGAAAGCATTGGCATTGTACGACAAAGATACGCCTGAGAGATGGCAAAATATTGCCACCGCGGTCGGTGGGAAGTCGGCCGAAGAAGTTCAAAGACACTATGAGATACTCTTGGAAGATCTCCGGCAGATCGAGTCCGGTCGTGTTCCTATTCCCAATTACCGAGGCACTAGCAATCGAGATGAAGAGTTGAGGTTAGTGAAGATGATGAATAATAAGAAACATATTTGAACTCAAAAGATGATGTTCTTTTCTTCTTTTCTTTTTCGATTACTGGATGGTGATTCGAAATATATACGTCATTTAATAATTATTAAATACAATTAAGTAAGTTTTCTTTAAACTACGTGTTGAAGCAGTCTCTTTCAATGAAAATATATACTTTAATCAAGTTATTTCATTTTGATACTCTATAGTAATTTGGGCTTGCATGATATTAATTTTTAAACTATATATATATCTCAACCATAGTTTTTAATATTTTAAACTATTGTAGCTGAAGATAGGCATCATAATTTGGTTTTTGGGCACTAGTTCCTTGCTATCTTGTTGAATATTCTTTGGTTGGATTTGGAGATTTTTGTATTTTGAACCAGTTTAGGTGAGTTTTATGTGCTTGGTTTTGTAGTTTTGTGATTAGGGTTTAGATTTTCTTTATATGGTTGGTGAATATTTGTGAGACTTTGACTAATAATTTGTTGGTTGAGTTTATTGAAATTTATTGGCTAGCTAGTTTGGTGGTCAGAATTAATCTTGTAACTATATAATTATTAATTAGTTCTGAGTAAGTATAAATTATTTAAGTTTTAAGTTTTGAAATAGATAGAAATTACATGCCTGTGTTTGGAGTACAATTTTAAATGTTTAATTTTCAAATAAGTTATTTTTTAAGAAAATTCCAATTGGGTAATAAATTTTACAAAAAAAATTAATAAAACAAGTTTTTTGAAAAGAAAAAAATTAAGTCAACCCAAATGAACTTGAAGTTTAGATAAAATTTATTCAAGAATAATTAACCCAATTACTTACATTTTCCTATAATTTTCAATCCAACAAAATTAAACATTTTAACTTGATCAACATATAAGTTAATAAACAAACAAGAGTTCAACAATTTTGTTGTTTTTTCTAAATATATTCACAAAACAAGAGAGATGAAGAGATAATCGATGCAATGGAACATCTTGGCGAGATTGACAGCCTCCTAACATCTTTAATAGTTCAACATAACTTGGGGATGGTTATCTTTAACCAACAAAAATTGAAATATATATATAACCCAAAAAATGCATAACCTTATGGGAAAATTCCAACCAAAAAGAAAAAGATAAACATTTAATTATCATACAAAAACGTTAGAGCACTAAATAAATTAATGATCAAAATATAATCTACTTTCAATTTTAGAATTACAAATGAAATAAAAGTTCATAATCGTGATAAATTTAATTACATTAACTCCATATAATGCTGAATTAACACAAAATTTATGACATTATAATAATAAAAGTATGTTTAGTTTAATACTAATTAACACGATTCCTTCCTTTAAACTATGGAATTAAAATGAAAGACATGAAATTATATAAAGGTTTAAAAAACAGAAGAGCATCGGTTGGAACACATGCAACATCCAACTATGTTTCAATGATTTAACCGTCACTTGCTTTAAGCTTTTTTCCCCACTACTTTAGGTTGTAGGACTAATAATTTGAAGAAAACTCCATTTAAATTTGATGAGTTAAATATCTCAAATAGGACAATGAAAGAAAAATCAACATTCAATTTTCTTGAATAAGTCGAAAGTTTCTATGTTGAGATGTGTTCTTCACTTTGCCATGATTGTTTTTTTTTTTTGTTAGGCTGTTAAAGTATCTGAAGCTTCAATGAAGAACTTGCCTACCACTACCACTATTCTCTTTCAATCTCTCATCAAACACAAGTGGCTCACTTGGCCTAGGTGTATTCATAGATATTCTAATGTACAAGTTTTATATCTTTTAAATCAACTTTCTCTCAATAAAAAGTGTACAACCAACAATCTATTTTAATATAATTTCATTTGCATTTAA

mRNA sequence

TTTATCCAATGGCTTCGAGCTCTTTGAAGCAGCAACGACCGGAGACGACGTGGACGCCAAAGCAAAACAAGCTGTTCGAGAAAGCATTGGCATTGTACGACAAAGATACGCCTGAGAGATGGCAAAATATTGCCACCGCGGTCGGTGGGAAGTCGGCCGAAGAAGTTCAAAGACACTATGAGATACTCTTGGAAGATCTCCGGCAGATCGAGTCCGGTCGTGTTCCTATTCCCAATTACCGAGGCACTAGCAATCGAGATGAAGAGTTGAGGCTGTTAAAGTATCTGAAGCTTCAATGAAGAACTTGCCTACCACTACCACTATTCTCTTTCAATCTCTCATCAAACACAAGTGGCTCACTTGGCCTAGGTGTATTCATAGATATTCTAATGTACAAGTTTTATATCTTTTAAATCAACTTTCTCTCAATAAAAAGTGTACAACCAACAATCTATTTTAATATAATTTCATTTGCATTTAA

Coding sequence (CDS)

ATGGCTTCGAGCTCTTTGAAGCAGCAACGACCGGAGACGACGTGGACGCCAAAGCAAAACAAGCTGTTCGAGAAAGCATTGGCATTGTACGACAAAGATACGCCTGAGAGATGGCAAAATATTGCCACCGCGGTCGGTGGGAAGTCGGCCGAAGAAGTTCAAAGACACTATGAGATACTCTTGGAAGATCTCCGGCAGATCGAGTCCGGTCGTGTTCCTATTCCCAATTACCGAGGCACTAGCAATCGAGATGAAGAGTTGAGGCTGTTAAAGTATCTGAAGCTTCAATGA

Protein sequence

MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEILLEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ
Homology
[Close]
BLAST of MELO3C012498.jh1 vs. NCBI nr
Match: XP_008447023.1 (PREDICTED: protein RADIALIS-like 3 [Cucumis melo])

HSP 1 Score: 191 bits (486), Expect = 2.44e-61
Identity = 95/96 (98.96%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEIL 60
          MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSA+EVQRHYEIL
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60

Query: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ 96
          LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ
Sbjct: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ 96

[Close]
BLAST of MELO3C012498.jh1 vs. NCBI nr
Match: XP_004151090.1 (protein RADIALIS-like 3 [Cucumis sativus])

HSP 1 Score: 187 bits (474), Expect = 1.65e-59
Identity = 93/96 (96.88%), Postives = 95/96 (98.96%), Query Frame = 0 

Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEIL 60
          MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSA+EVQRHYEIL
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60

Query: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ 96
          LEDLR+IESGRVPIPNYR TSNRDEELRLLKYLKLQ
Sbjct: 61 LEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ 96

[Close]
BLAST of MELO3C012498.jh1 vs. NCBI nr
Match: KAA0055424.1 (protein RADIALIS-like 3 [Cucumis melo var. makuwa] >TYK22307.1 protein RADIALIS-like 3 [Cucumis melo var. makuwa])

HSP 1 Score: 182 bits (462), Expect = 1.23e-57
Identity = 90/93 (96.77%), Postives = 92/93 (98.92%), Query Frame = 0 

Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEIL 60
          MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEIL
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEIL 60

Query: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYL 93
          LEDLRQIESGRVPIPNYRGTSNRDEELRL+K +
Sbjct: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLVKMM 93

[Close]
BLAST of MELO3C012498.jh1 vs. NCBI nr
Match: XP_038888995.1 (protein RADIALIS-like 3 isoform X1 [Benincasa hispida])

HSP 1 Score: 173 bits (439), Expect = 3.62e-54
Identity = 85/96 (88.54%), Postives = 90/96 (93.75%), Query Frame = 0 

Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEIL 60
          MASSSLKQQRPETTWT KQNKLFEKALALYDK+TPERW NIA AVGGKS +EV+RHYE+L
Sbjct: 1  MASSSLKQQRPETTWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSTDEVKRHYEVL 60

Query: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ 96
          LEDLR+IESGRVPIPNYRG  NRDEELRLLKYLKLQ
Sbjct: 61 LEDLRRIESGRVPIPNYRGGGNRDEELRLLKYLKLQ 96

[Close]
BLAST of MELO3C012498.jh1 vs. NCBI nr
Match: XP_023554816.1 (protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo])

HSP 1 Score: 171 bits (433), Expect = 2.98e-53
Identity = 85/96 (88.54%), Postives = 89/96 (92.71%), Query Frame = 0 

Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEIL 60
          MASSSLKQQRPE TWT KQNKLFEKALALYDK+TPERW NIA AVGGKSA+EV+RHYEIL
Sbjct: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60

Query: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ 96
          LEDLR+IESGRVPIPNYRG  N DEELRLLKYLKLQ
Sbjct: 61 LEDLRRIESGRVPIPNYRGAHNGDEELRLLKYLKLQ 96

[Close]
BLAST of MELO3C012498.jh1 vs. ExPASy Swiss-Prot
Match: Q8GW75 (Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1)

HSP 1 Score: 114.4 bits (285), Expect = 7.2e-25
Identity = 58/103 (56.31%), Postives = 78/103 (75.73%), Query Frame = 0 

Query: 1   MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEIL 60
           MASSS+      ++WT KQNK+FE+ALA+YDKDTP+RWQN+A AVG KSAEEV+RHY+IL
Sbjct: 1   MASSSMSS---SSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDIL 60

Query: 61  LEDLRQIESGRVPIPNYR----GTSNR---DEELRLLKYLKLQ 97
           +EDL  IE   VP+P Y+    G+ +R   D +LRL+K +++Q
Sbjct: 61  VEDLMNIEQDLVPLPKYKTVDVGSKSRGIDDFDLRLMKNMRIQ 100

[Close]
BLAST of MELO3C012498.jh1 vs. ExPASy Swiss-Prot
Match: Q6NNN0 (Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1)

HSP 1 Score: 110.5 bits (275), Expect = 1.0e-23
Identity = 51/82 (62.20%), Postives = 63/82 (76.83%), Query Frame = 0 

Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEIL 60
          MAS+S+       +WT K+NKLFE+ALA YD+DTP+RW N+A AVGGKSAEEV+RHYE+L
Sbjct: 1  MASNSMSS---SASWTRKENKLFERALATYDQDTPDRWHNVARAVGGKSAEEVRRHYELL 60

Query: 61 LEDLRQIESGRVPIPNYRGTSN 83
          + D+  IESGR P PNYR   N
Sbjct: 61 IRDVNDIESGRYPHPNYRSNGN 79

[Close]
BLAST of MELO3C012498.jh1 vs. ExPASy Swiss-Prot
Match: Q1A173 (Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1)

HSP 1 Score: 109.8 bits (273), Expect = 1.8e-23
Identity = 56/100 (56.00%), Postives = 72/100 (72.00%), Query Frame = 0 

Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEIL 60
          MAS+S     P   WT  QNK+FE+ALA+YDKDTP+RW N+A AVGGK+ EEV+RHY+IL
Sbjct: 1  MASNSRSSISP---WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDIL 60

Query: 61 LEDLRQIESGRVPIPNYR-----GTSNRDEELRLLKYLKL 96
          +EDL  IE+GRVP+PNY+       S  D + R +K LK+
Sbjct: 61 VEDLINIETGRVPLPNYKTFESNSRSINDFDTRKMKNLKI 97

[Close]
BLAST of MELO3C012498.jh1 vs. ExPASy Swiss-Prot
Match: F4JVB8 (Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1)

HSP 1 Score: 108.2 bits (269), Expect = 5.2e-23
Identity = 54/101 (53.47%), Postives = 73/101 (72.28%), Query Frame = 0 

Query: 1   MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEIL 60
           MASSS+  Q    +WT KQNK FE+ALA YD+DTP RWQN+A  VGGK+ EEV+RHYE+L
Sbjct: 1   MASSSMSSQ-SSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELL 60

Query: 61  LEDLRQIESGRVPIPNYR---GTSN--RDEELRLLKYLKLQ 97
           ++D+  IE+G VP PNYR   G +N    +E + ++ ++LQ
Sbjct: 61  VQDINSIENGHVPFPNYRTSGGCTNGRLSQEEKRMRNMRLQ 100

[Close]
BLAST of MELO3C012498.jh1 vs. ExPASy Swiss-Prot
Match: Q58FS3 (Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1)

HSP 1 Score: 102.8 bits (255), Expect = 2.2e-21
Identity = 46/83 (55.42%), Postives = 65/83 (78.31%), Query Frame = 0 

Query: 15 WTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEILLEDLRQIESGRVPI 74
          W+ K+NK FE+ALA+YDKDTP+RW N+A AV G++ EEV++HYEIL+ED++ IESG+VP 
Sbjct: 11 WSAKENKAFERALAVYDKDTPDRWANVARAVEGRTPEEVKKHYEILVEDIKYIESGKVPF 70

Query: 75 PNYRGT-SNRDEELRLLKYLKLQ 97
          PNYR T  N   + +  + LK++
Sbjct: 71 PNYRTTGGNMKTDEKRFRNLKIR 93

[Close]
BLAST of MELO3C012498.jh1 vs. ExPASy TrEMBL
Match: A0A1S3BHB0 (protein RADIALIS-like 3 OS=Cucumis melo OX=3656 GN=LOC103489572 PE=4 SV=1)

HSP 1 Score: 191 bits (486), Expect = 1.18e-61
Identity = 95/96 (98.96%), Postives = 96/96 (100.00%), Query Frame = 0 

Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEIL 60
          MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSA+EVQRHYEIL
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60

Query: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ 96
          LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ
Sbjct: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ 96

[Close]
BLAST of MELO3C012498.jh1 vs. ExPASy TrEMBL
Match: A0A0A0K2A2 (SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G000020 PE=4 SV=1)

HSP 1 Score: 187 bits (474), Expect = 8.01e-60
Identity = 93/96 (96.88%), Postives = 95/96 (98.96%), Query Frame = 0 

Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEIL 60
          MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSA+EVQRHYEIL
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSADEVQRHYEIL 60

Query: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ 96
          LEDLR+IESGRVPIPNYR TSNRDEELRLLKYLKLQ
Sbjct: 61 LEDLRRIESGRVPIPNYRRTSNRDEELRLLKYLKLQ 96

[Close]
BLAST of MELO3C012498.jh1 vs. ExPASy TrEMBL
Match: A0A5D3DF44 (Protein RADIALIS-like 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1428G00100 PE=4 SV=1)

HSP 1 Score: 182 bits (462), Expect = 5.96e-58
Identity = 90/93 (96.77%), Postives = 92/93 (98.92%), Query Frame = 0 

Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEIL 60
          MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEIL
Sbjct: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEIL 60

Query: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYL 93
          LEDLRQIESGRVPIPNYRGTSNRDEELRL+K +
Sbjct: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLVKMM 93

[Close]
BLAST of MELO3C012498.jh1 vs. ExPASy TrEMBL
Match: A0A6J1GKW1 (protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111455298 PE=4 SV=1)

HSP 1 Score: 168 bits (426), Expect = 1.69e-52
Identity = 84/96 (87.50%), Postives = 88/96 (91.67%), Query Frame = 0 

Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEIL 60
          MASSSLKQQRPE TWT KQNKLFEKALALYDK+TPERW NIA AVGGKSA+EV+RHYEIL
Sbjct: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKETPERWHNIAMAVGGKSADEVKRHYEIL 60

Query: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ 96
          LEDL +IESGRVPIPNYRG  N DEELRLLKYLKLQ
Sbjct: 61 LEDLLRIESGRVPIPNYRGVHNGDEELRLLKYLKLQ 96

[Close]
BLAST of MELO3C012498.jh1 vs. ExPASy TrEMBL
Match: A0A6J1ICR6 (protein RADIALIS-like 3 OS=Cucurbita maxima OX=3661 GN=LOC111474479 PE=4 SV=1)

HSP 1 Score: 167 bits (423), Expect = 4.84e-52
Identity = 83/96 (86.46%), Postives = 88/96 (91.67%), Query Frame = 0 

Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEIL 60
          MASSSLKQQRPE TWT KQNKLFEKALALYDK+ PERW NIA AVGGKSA+EV+RHYEIL
Sbjct: 1  MASSSLKQQRPEATWTAKQNKLFEKALALYDKEMPERWHNIAMAVGGKSADEVKRHYEIL 60

Query: 61 LEDLRQIESGRVPIPNYRGTSNRDEELRLLKYLKLQ 96
          LEDL++IESGRVPIPNYRG  N DEELRLLKYLKLQ
Sbjct: 61 LEDLQRIESGRVPIPNYRGAHNGDEELRLLKYLKLQ 96

[Close]
BLAST of MELO3C012498.jh1 vs. TAIR 10
Match: AT1G19510.1 (RAD-like 5 )

HSP 1 Score: 114.4 bits (285), Expect = 5.1e-26
Identity = 58/103 (56.31%), Postives = 78/103 (75.73%), Query Frame = 0 

Query: 1   MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEIL 60
           MASSS+      ++WT KQNK+FE+ALA+YDKDTP+RWQN+A AVG KSAEEV+RHY+IL
Sbjct: 1   MASSSMSS---SSSWTSKQNKMFERALAVYDKDTPDRWQNVAKAVGSKSAEEVKRHYDIL 60

Query: 61  LEDLRQIESGRVPIPNYR----GTSNR---DEELRLLKYLKLQ 97
           +EDL  IE   VP+P Y+    G+ +R   D +LRL+K +++Q
Sbjct: 61  VEDLMNIEQDLVPLPKYKTVDVGSKSRGIDDFDLRLMKNMRIQ 100

[Close]
BLAST of MELO3C012498.jh1 vs. TAIR 10
Match: AT1G75250.2 (RAD-like 6 )

HSP 1 Score: 109.8 bits (273), Expect = 1.3e-24
Identity = 56/100 (56.00%), Postives = 72/100 (72.00%), Query Frame = 0 

Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEIL 60
          MAS+S     P   WT  QNK+FE+ALA+YDKDTP+RW N+A AVGGK+ EEV+RHY+IL
Sbjct: 1  MASNSRSSISP---WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDIL 60

Query: 61 LEDLRQIESGRVPIPNYR-----GTSNRDEELRLLKYLKL 96
          +EDL  IE+GRVP+PNY+       S  D + R +K LK+
Sbjct: 61 VEDLINIETGRVPLPNYKTFESNSRSINDFDTRKMKNLKI 97

[Close]
BLAST of MELO3C012498.jh1 vs. TAIR 10
Match: AT4G39250.1 (RAD-like 1 )

HSP 1 Score: 108.2 bits (269), Expect = 3.7e-24
Identity = 54/101 (53.47%), Postives = 73/101 (72.28%), Query Frame = 0 

Query: 1   MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEIL 60
           MASSS+  Q    +WT KQNK FE+ALA YD+DTP RWQN+A  VGGK+ EEV+RHYE+L
Sbjct: 1   MASSSMSSQ-SSGSWTAKQNKAFEQALATYDQDTPNRWQNVAKVVGGKTTEEVKRHYELL 60

Query: 61  LEDLRQIESGRVPIPNYR---GTSN--RDEELRLLKYLKLQ 97
           ++D+  IE+G VP PNYR   G +N    +E + ++ ++LQ
Sbjct: 61  VQDINSIENGHVPFPNYRTSGGCTNGRLSQEEKRMRNMRLQ 100

[Close]
BLAST of MELO3C012498.jh1 vs. TAIR 10
Match: AT1G75250.1 (RAD-like 6 )

HSP 1 Score: 107.1 bits (266), Expect = 8.2e-24
Identity = 50/78 (64.10%), Postives = 63/78 (80.77%), Query Frame = 0 

Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEIL 60
          MAS+S     P   WT  QNK+FE+ALA+YDKDTP+RW N+A AVGGK+ EEV+RHY+IL
Sbjct: 1  MASNSRSSISP---WTFSQNKMFERALAVYDKDTPDRWHNVAKAVGGKTVEEVKRHYDIL 60

Query: 61 LEDLRQIESGRVPIPNYR 79
          +EDL  IE+GRVP+PNY+
Sbjct: 61 VEDLINIETGRVPLPNYK 75

[Close]
BLAST of MELO3C012498.jh1 vs. TAIR 10
Match: AT2G18328.1 (RAD-like 4 )

HSP 1 Score: 101.7 bits (252), Expect = 3.4e-22
Identity = 49/81 (60.49%), Postives = 61/81 (75.31%), Query Frame = 0 

Query: 1  MASSSLKQQRPETTWTPKQNKLFEKALALYDKDTPERWQNIATAVGGKSAEEVQRHYEIL 60
          MASSS+      ++WT +++K FE ALA +DKDTP+RWQ IA AVGGKS EEV+RHYE+L
Sbjct: 1  MASSSMS----TSSWTAREDKQFEMALAKFDKDTPDRWQKIARAVGGKSTEEVKRHYELL 60

Query: 61 LEDLRQIESGRVPIPNYRGTS 82
          L D+  IESGR P P YR T+
Sbjct: 61 LRDVNDIESGRYPQPRYRNTN 77

The following BLAST results are available for this feature:
BLAST of MELO3C012498.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
XP_008447023.12.44e-6198.96PREDICTED: protein RADIALIS-like 3 [Cucumis melo][more]
XP_004151090.11.65e-5996.88protein RADIALIS-like 3 [Cucumis sativus][more]
KAA0055424.11.23e-5796.77protein RADIALIS-like 3 [Cucumis melo var. makuwa] >TYK22307.1 protein RADIALIS-... [more]
XP_038888995.13.62e-5488.54protein RADIALIS-like 3 isoform X1 [Benincasa hispida][more]
XP_023554816.12.98e-5388.54protein RADIALIS-like 3 [Cucurbita pepo subsp. pepo][more]
BLAST of MELO3C012498.jh1 vs. ExPASy Swiss-Prot
Match NameE-valueIdentityDescription
Q8GW757.2e-2556.31Protein RADIALIS-like 5 OS=Arabidopsis thaliana OX=3702 GN=RL5 PE=3 SV=1[more]
Q6NNN01.0e-2362.20Protein RADIALIS-like 3 OS=Arabidopsis thaliana OX=3702 GN=RL3 PE=2 SV=1[more]
Q1A1731.8e-2356.00Protein RADIALIS-like 6 OS=Arabidopsis thaliana OX=3702 GN=RL6 PE=2 SV=1[more]
F4JVB85.2e-2353.47Protein RADIALIS-like 1 OS=Arabidopsis thaliana OX=3702 GN=RL1 PE=2 SV=1[more]
Q58FS32.2e-2155.42Transcription factor RADIALIS OS=Antirrhinum majus OX=4151 GN=RAD PE=1 SV=1[more]
BLAST of MELO3C012498.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A1S3BHB01.18e-6198.96protein RADIALIS-like 3 OS=Cucumis melo OX=3656 GN=LOC103489572 PE=4 SV=1[more]
A0A0A0K2A28.01e-6096.88SANT domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_7G000020 PE=4 S... [more]
A0A5D3DF445.96e-5896.77Protein RADIALIS-like 3 OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A6J1GKW11.69e-5287.50protein RADIALIS-like 3 OS=Cucurbita moschata OX=3662 GN=LOC111455298 PE=4 SV=1[more]
A0A6J1ICR64.84e-5286.46protein RADIALIS-like 3 OS=Cucurbita maxima OX=3661 GN=LOC111474479 PE=4 SV=1[more]
BLAST of MELO3C012498.jh1 vs. TAIR 10
Match NameE-valueIdentityDescription
AT1G19510.15.1e-2656.31RAD-like 5 [more]
AT1G75250.21.3e-2456.00RAD-like 6 [more]
AT4G39250.13.7e-2453.47RAD-like 1 [more]
AT1G75250.18.2e-2464.10RAD-like 6 [more]
AT2G18328.13.4e-2260.49RAD-like 4 [more]
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
IPR001005SANT/Myb domainSMARTSM00717santcoord: 11..63
e-value: 4.3E-8
score: 42.9
IPR001005SANT/Myb domainPROSITEPS50090MYB_LIKEcoord: 7..61
score: 6.411452
IPR001005SANT/Myb domainCDDcd00167SANTcoord: 14..61
e-value: 1.01482E-6
score: 39.8662
IPR017930Myb domainPFAMPF00249Myb_DNA-bindingcoord: 14..57
e-value: 3.2E-6
score: 27.2
NoneNo IPR availableGENE3D1.10.10.60coord: 7..74
e-value: 9.5E-24
score: 85.0
NoneNo IPR availablePANTHERPTHR43952:SF29PROTEIN RADIALIS-LIKE 3coord: 1..80
IPR044636Transcription factor RADIALIS-likePANTHERPTHR43952MYB FAMILY TRANSCRIPTION FACTOR-RELATEDcoord: 1..80
IPR009057Homeobox-like domain superfamilySUPERFAMILY46689Homeodomain-likecoord: 15..68

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C012498.jh1.t1MELO3C012498.jh1.t1mRNA


GO Annotation
GO Assignments
This gene is annotated with the following GO terms.
Category Term Accession Term Name
molecular_function GO:0003700 DNA-binding transcription factor activity