MELO3C012432 (gene) Melon (DHL92) v4

Overview
NameMELO3C012432
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionNeural Wiskott-Aldrich syndrome protein-like
Locationchr10: 521677 .. 522712 (-)
RNA-Seq ExpressionMELO3C012432
SyntenyMELO3C012432
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR
Hold the cursor over a type above to highlight its positions in the sequence below.
TATGAACGATATATGCTCAAATGTTAAGAACCAAACAAGACTTTACCCAAGAAAATATGTCACGAAATTAAACATTGTTATTAACGTTCAAACTTCCATAAGTTTTCTTCACAAAATAATCTTCAATTAGGAACAAACAAAACAAGACAGCCATAAAATTAAAAGGCTTCTCACAATAATCTTCAATGTGAGAAGTGTATATATGTATATGTATGATTGTATATTTGTGCACCTTAATCGTACGAAGGACTCATGGCTAAAAGGTTTAAAATTTTTGCTTTTGCTTTTACTTTTATTTTTGTGTTTCTTCATGTCACAAATTTGACTTTTGCTCAAGATGCATCTCCTCCTCCACCACCATCCAACCCAACTGAAACTCCACCTCCACCCCCACCATCCAATACCACCGACACTCCGCCGCCGCCACCCCCATCCAACATAACTGACACTCCGCCTCCACCGCCATCAAATACCACTGACACTCCGCCTCCACCGCCATCAAACACCACTGACACTCCGCCTCCCCCCGCCACCATCCAACACTACCAACACTCCTCCACCACCTCCACCATCGAACACAACTGATACTCCACCTCCACCGCCACCATCGAACACAACTGACACTCCGCCTCCACCGCCACCGTCGAACACCACTGATACACCACCACCGCCACCACCATCGAACACCACTGACACTCCTCCACCACCGCCATCCAACACGACCGACACTCCCCCACCACCATCTAATACAACCAACTCATCTCCACCACCACCACCACCACCAAATTCCACCATTATCTTACCACCTGCACCGCCGCCTAACATGGGTTCATCTCCACCACCTTCGAGCGAAGCATTGAAGGAAAAGGGTGTCGGAGGTTCAAAAGGATTGAGCGGGGGTCAAAAGGCAGGGATTGCATTTGGAGTGATCGCAGGAGTAGGTTTGTTGGGATTTGTAGGATTAATTTGCATCAAACGTCGTAGTAATGCAAGAAGAAGCCGTTATGGATATGCTGCAAGAGACTCAATCCTTTAA

mRNA sequence

TATGAACGATATATGCTCAAATGTTAAGAACCAAACAAGACTTTACCCAAGAAAATATGTCACGAAATTAAACATTGTTATTAACGTTCAAACTTCCATAAGTTTTCTTCACAAAATAATCTTCAATTAGGAACAAACAAAACAAGACAGCCATAAAATTAAAAGGCTTCTCACAATAATCTTCAATGTGAGAAGTGTATATATGTATATGTATGATTGTATATTTGTGCACCTTAATCGTACGAAGGACTCATGGCTAAAAGGTTTAAAATTTTTGCTTTTGCTTTTACTTTTATTTTTGTGTTTCTTCATGTCACAAATTTGACTTTTGCTCAAGATGCATCTCCTCCTCCACCACCATCCAACCCAACTGAAACTCCACCTCCACCCCCACCATCCAATACCACCGACACTCCGCCGCCGCCACCCCCATCCAACATAACTGACACTCCGCCTCCACCGCCATCAAATACCACTGACACTCCGCCTCCACCGCCATCAAACACCACTGACACTCCGCCTCCCCCCGCCACCATCCAACACTACCAACACTCCTCCACCACCTCCACCATCGAACACAACTGATACTCCACCTCCACCGCCACCATCGAACACAACTGACACTCCGCCTCCACCGCCACCGTCGAACACCACTGATACACCACCACCGCCACCACCATCGAACACCACTGACACTCCTCCACCACCGCCATCCAACACGACCGACACTCCCCCACCACCATCTAATACAACCAACTCATCTCCACCACCACCACCACCACCAAATTCCACCATTATCTTACCACCTGCACCGCCGCCTAACATGGGTTCATCTCCACCACCTTCGAGCGAAGCATTGAAGGAAAAGGGTGTCGGAGGTTCAAAAGGATTGAGCGGGGGTCAAAAGGCAGGGATTGCATTTGGAGTGATCGCAGGAGTAGGTTTGTTGGGATTTGTAGGATTAATTTGCATCAAACGTCGTAGTAATGCAAGAAGAAGCCGTTATGGATATGCTGCAAGAGACTCAATCCTTTAA

Coding sequence (CDS)

ATGGCTAAAAGGTTTAAAATTTTTGCTTTTGCTTTTACTTTTATTTTTGTGTTTCTTCATGTCACAAATTTGACTTTTGCTCAAGATGCATCTCCTCCTCCACCACCATCCAACCCAACTGAAACTCCACCTCCACCCCCACCATCCAATACCACCGACACTCCGCCGCCGCCACCCCCATCCAACATAACTGACACTCCGCCTCCACCGCCATCAAATACCACTGACACTCCGCCTCCACCGCCATCAAACACCACTGACACTCCGCCTCCCCCCGCCACCATCCAACACTACCAACACTCCTCCACCACCTCCACCATCGAACACAACTGA

Protein sequence

MAKRFKIFAFAFTFIFVFLHVTNLTFAQDASPPPPPSNPTETPPPPPPSNTTDTPPPPPPSNITDTPPPPPSNTTDTPPPPPSNTTDTPPPPATIQHYQHSSTTSTIEHN
Homology
BLAST of MELO3C012432 vs. NCBI nr
Match: KAA0034727.1 (neural Wiskott-Aldrich syndrome protein-like [Cucumis melo var. makuwa] >TYK09280.1 neural Wiskott-Aldrich syndrome protein-like [Cucumis melo var. makuwa])

HSP 1 Score: 159.1 bits (401), Expect = 2.2e-35
Identity = 96/106 (90.57%), Postives = 98/106 (92.45%), Query Frame = 0

Query: 1   MAKRFKIFAFAFTFIFVFLHVTNLTFAQDASPPPPPSNPTETPPPPPPSNTTDTPPPPPP 60
           MAKRFKIFAFAFTFIFVFLHVTNLTFAQDASPPPPPSNPTETPPPPPPSNTTDTPPPPPP
Sbjct: 1   MAKRFKIFAFAFTFIFVFLHVTNLTFAQDASPPPPPSNPTETPPPPPPSNTTDTPPPPPP 60

Query: 61  SNITDTPPPPPSNTTDTPPPPPSNTTDTPPPPATIQHYQHSSTTST 107
           SNITDTPPPPPSNTTDTPPPPPSNTTDTPPPP        S+TT+T
Sbjct: 61  SNITDTPPPPPSNTTDTPPPPPSNTTDTPPPPPP------SNTTNT 100

BLAST of MELO3C012432 vs. NCBI nr
Match: XP_038891654.1 (proline-rich receptor-like protein kinase PERK2 [Benincasa hispida])

HSP 1 Score: 102.8 bits (255), Expect = 1.9e-18
Identity = 79/108 (73.15%), Postives = 82/108 (75.93%), Query Frame = 0

Query: 1   MAKRFKIFAFAFTFIFVFLHVTNLTFAQDASPPPPPSNPTETPPPPPPSNTTDTPPPPPP 60
           MAK   I  F   FIFV   +TNLT +QDASPPPPPSN TET PPPPPSNTTDTPPPPPP
Sbjct: 1   MAK--SITVFVSLFIFVSFLLTNLTLSQDASPPPPPSNTTET-PPPPPSNTTDTPPPPPP 60

Query: 61  SNITDT-PPPPPSNTTDT-PPPPPSNTTDTPPPPATIQHYQHSSTTST 107
           SN TDT PPPPPSNTTDT PPPPPSNTTDTPPPP        S+TT T
Sbjct: 61  SNTTDTPPPPPPSNTTDTPPPPPPSNTTDTPPPPPP------SNTTDT 99

BLAST of MELO3C012432 vs. NCBI nr
Match: XP_022139212.1 (formin-like protein 20 [Momordica charantia])

HSP 1 Score: 74.7 bits (182), Expect = 5.5e-10
Identity = 53/66 (80.30%), Postives = 56/66 (84.85%), Query Frame = 0

Query: 29  DASPPPPPSNPTETPPPPPPSNTTDTPPPPPPSNITDTPPPPP-SNTTDT-PPPPPSNTT 88
           DA PPPPPSN T++PPPPPPSN T+ PPPPPPSN TDTPPPPP SN TDT PPPPPSN T
Sbjct: 108 DAPPPPPPSNGTDSPPPPPPSNGTNAPPPPPPSNGTDTPPPPPSSNGTDTPPPPPPSNGT 167

Query: 89  DTPPPP 93
           D PPPP
Sbjct: 168 DAPPPP 173

BLAST of MELO3C012432 vs. ExPASy TrEMBL
Match: A0A5D3CD81 (Neural Wiskott-Aldrich syndrome protein-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002750 PE=4 SV=1)

HSP 1 Score: 159.1 bits (401), Expect = 1.1e-35
Identity = 96/106 (90.57%), Postives = 98/106 (92.45%), Query Frame = 0

Query: 1   MAKRFKIFAFAFTFIFVFLHVTNLTFAQDASPPPPPSNPTETPPPPPPSNTTDTPPPPPP 60
           MAKRFKIFAFAFTFIFVFLHVTNLTFAQDASPPPPPSNPTETPPPPPPSNTTDTPPPPPP
Sbjct: 1   MAKRFKIFAFAFTFIFVFLHVTNLTFAQDASPPPPPSNPTETPPPPPPSNTTDTPPPPPP 60

Query: 61  SNITDTPPPPPSNTTDTPPPPPSNTTDTPPPPATIQHYQHSSTTST 107
           SNITDTPPPPPSNTTDTPPPPPSNTTDTPPPP        S+TT+T
Sbjct: 61  SNITDTPPPPPSNTTDTPPPPPSNTTDTPPPPPP------SNTTNT 100

BLAST of MELO3C012432 vs. ExPASy TrEMBL
Match: A0A6J1CDD2 (formin-like protein 20 OS=Momordica charantia OX=3673 GN=LOC111010181 PE=4 SV=1)

HSP 1 Score: 74.7 bits (182), Expect = 2.7e-10
Identity = 53/66 (80.30%), Postives = 56/66 (84.85%), Query Frame = 0

Query: 29  DASPPPPPSNPTETPPPPPPSNTTDTPPPPPPSNITDTPPPPP-SNTTDT-PPPPPSNTT 88
           DA PPPPPSN T++PPPPPPSN T+ PPPPPPSN TDTPPPPP SN TDT PPPPPSN T
Sbjct: 108 DAPPPPPPSNGTDSPPPPPPSNGTNAPPPPPPSNGTDTPPPPPSSNGTDTPPPPPPSNGT 167

Query: 89  DTPPPP 93
           D PPPP
Sbjct: 168 DAPPPP 173

BLAST of MELO3C012432 vs. ExPASy TrEMBL
Match: A0A165IHX8 (Glyco_hydro_cc domain-containing protein OS=Exidia glandulosa HHB12029 OX=1314781 GN=EXIGLDRAFT_717153 PE=4 SV=1)

HSP 1 Score: 53.1 bits (126), Expect = 8.3e-04
Identity = 40/66 (60.61%), Postives = 47/66 (71.21%), Query Frame = 0

Query: 31  SPPPPPSNPTETPPPPPPSNTTDTPPPPPPSNITDTPPPPPSNTTDTPPPPPSNTTDTPP 90
           +PPPPP + TE PPPPP   TT+ PPPPPP   T+ PPPPP  TT+ PPPPP  TT+ PP
Sbjct: 135 APPPPPPSTTEAPPPPP--TTTEAPPPPPPVT-TEAPPPPPPTTTEAPPPPPPTTTEAPP 194

Query: 91  PPATIQ 97
           PP T +
Sbjct: 195 PPPTTE 197

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0034727.12.2e-3590.57neural Wiskott-Aldrich syndrome protein-like [Cucumis melo var. makuwa] >TYK0928... [more]
XP_038891654.11.9e-1873.15proline-rich receptor-like protein kinase PERK2 [Benincasa hispida][more]
XP_022139212.15.5e-1080.30formin-like protein 20 [Momordica charantia][more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5D3CD811.1e-3590.57Neural Wiskott-Aldrich syndrome protein-like OS=Cucumis melo var. makuwa OX=1194... [more]
A0A6J1CDD22.7e-1080.30formin-like protein 20 OS=Momordica charantia OX=3673 GN=LOC111010181 PE=4 SV=1[more]
A0A165IHX88.3e-0460.61Glyco_hydro_cc domain-containing protein OS=Exidia glandulosa HHB12029 OX=131478... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePRINTSPR01217PRICHEXTENSNcoord: 22..34
score: 30.77
coord: 58..70
score: 44.62
coord: 71..92
score: 42.73
coord: 36..52
score: 41.18
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 90..110
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 29..89
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 26..110

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C012432.1MELO3C012432.1mRNA