MELO3C012396 (gene) Melon (DHL92) v4

Overview


Name	MELO3C012396
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	protein NUCLEAR FUSION DEFECTIVE 4-like
Location	chr10: 721428 .. 721715 (+)
RNA-Seq Expression	MELO3C012396
Synteny	MELO3C012396

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGTTCGTGGTGTTTGCTTCACTCCTAATCACGGTGATGTCTGGAACAATGTACATGTTCGATCTATATTCGGCGACATTAAATCGATTTTGGGTTACGACCAAACGACGTTGAATTTGTTGAGTTTTTTTCAAGAGTTGGGTGCAAATGTCGGCGTTTCATCTGGTCTTATTAACGAGGTTACGCCACCTTGGGTGGTTCTATTAATTGGCATCGTTATGAATTTCTTTGGTTACTTCATGATATGGCGTGGTGTTACTCGTCGGATCTCCGCCTCAAAAGTTTGA

mRNA sequence

ATGGTTCGTGGTGTTTGCTTCACTCCTAATCACGGTGATGTCTGGAACAATGTACATGTTCGATCTATATTCGGCGACATTAAATCGATTTTGGGTTACGACCAAACGACGTTGAATTTGTTGAGTTTTTTTCAAGAGTTGGGTGCAAATGTCGGCGTTTCATCTGGTCTTATTAACGAGGTTACGCCACCTTGGGTGGTTCTATTAATTGGCATCGTTATGAATTTCTTTGGTTACTTCATGATATGGCGTGGTGTTACTCGTCGGATCTCCGCCTCAAAAGTTTGA

Coding sequence (CDS)

ATGGTTCGTGGTGTTTGCTTCACTCCTAATCACGGTGATGTCTGGAACAATGTACATGTTCGATCTATATTCGGCGACATTAAATCGATTTTGGGTTACGACCAAACGACGTTGAATTTGTTGAGTTTTTTTCAAGAGTTGGGTGCAAATGTCGGCGTTTCATCTGGTCTTATTAACGAGGTTACGCCACCTTGGGTGGTTCTATTAATTGGCATCGTTATGAATTTCTTTGGTTACTTCATGATATGGCGTGGTGTTACTCGTCGGATCTCCGCCTCAAAAGTTTGA

Protein sequence

MVRGVCFTPNHGDVWNNVHVRSIFGDIKSILGYDQTTLNLLSFFQELGANVGVSSGLINEVTPPWVVLLIGIVMNFFGYFMIWRGVTRRISASKV

Homology

[Close]

BLAST of MELO3C012396 vs. NCBI nr
Match: XP_004142499.3 (protein NUCLEAR FUSION DEFECTIVE 4-like [Cucumis sativus] >KAE8648849.1 hypothetical protein Csa_008497 [Cucumis sativus])

HSP 1 Score: 124.4 bits (311), Expect = 5.2e-25
Identity = 60/70 (85.71%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 26  DIKSILGYDQTTLNLLSFFQELGANVGVSSGLINEVTPPWVVLLIGIVMNFFGYFMIWRG 85
           DIKS+LGYDQTTLNLLSFF++LGANVGV SGLINEVTPPWVVL IG V+NFFGYFMIW  
Sbjct: 50  DIKSVLGYDQTTLNLLSFFKDLGANVGVLSGLINEVTPPWVVLSIGAVLNFFGYFMIWLA 109

Query: 86  VTRRISASKV 96
           VTRRISA KV
Sbjct: 110 VTRRISAPKV 119

[Close]

BLAST of MELO3C012396 vs. NCBI nr
Match: XP_038893353.1 (LOW QUALITY PROTEIN: protein NUCLEAR FUSION DEFECTIVE 4-like [Benincasa hispida])

HSP 1 Score: 124.0 bits (310), Expect = 6.8e-25
Identity = 59/70 (84.29%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 26  DIKSILGYDQTTLNLLSFFQELGANVGVSSGLINEVTPPWVVLLIGIVMNFFGYFMIWRG 85
           DIKS+LGYDQTTLNLLSFF++LGANVGV SGLINEVTPPWVVL IG ++NFFGYFMIW  
Sbjct: 50  DIKSVLGYDQTTLNLLSFFKDLGANVGVLSGLINEVTPPWVVLSIGAILNFFGYFMIWLA 109

Query: 86  VTRRISASKV 96
           VTRRISA KV
Sbjct: 110 VTRRISAPKV 119

[Close]

BLAST of MELO3C012396 vs. NCBI nr
Match: XP_031741159.1 (uncharacterized protein LOC101205029 [Cucumis sativus] >KAE8648846.1 hypothetical protein Csa_008243 [Cucumis sativus])

HSP 1 Score: 124.0 bits (310), Expect = 6.8e-25
Identity = 58/71 (81.69%), Postives = 65/71 (91.55%), Query Frame = 0


Query: 25  GDIKSILGYDQTTLNLLSFFQELGANVGVSSGLINEVTPPWVVLLIGIVMNFFGYFMIWR 84
           GDIKS+LGY+QTTLNLLSFF++LGANVG+ SGLINEVTPPWV+LLIG +MNFFGYFMIW 
Sbjct: 49  GDIKSVLGYNQTTLNLLSFFKDLGANVGILSGLINEVTPPWVILLIGALMNFFGYFMIWL 108

Query: 85  GVTRRISASKV 96
            VTRRI A KV
Sbjct: 109 SVTRRIFAPKV 119

[Close]

BLAST of MELO3C012396 vs. NCBI nr
Match: XP_022956604.1 (protein NUCLEAR FUSION DEFECTIVE 4-like [Cucurbita moschata])

HSP 1 Score: 123.2 bits (308), Expect = 1.2e-24
Identity = 59/70 (84.29%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 26  DIKSILGYDQTTLNLLSFFQELGANVGVSSGLINEVTPPWVVLLIGIVMNFFGYFMIWRG 85
           DIKS+LGYDQTTLNLLSFF++LGANVGV SGLINEVTPPWVVL IG VMNFFGYFMIW  
Sbjct: 50  DIKSVLGYDQTTLNLLSFFKDLGANVGVLSGLINEVTPPWVVLSIGAVMNFFGYFMIWLA 109

Query: 86  VTRRISASKV 96
           VTR+I+A KV
Sbjct: 110 VTRKIAAPKV 119

[Close]

BLAST of MELO3C012396 vs. NCBI nr
Match: XP_023535761.1 (protein NUCLEAR FUSION DEFECTIVE 4-like [Cucurbita pepo subsp. pepo])

HSP 1 Score: 122.9 bits (307), Expect = 1.5e-24
Identity = 59/70 (84.29%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 26  DIKSILGYDQTTLNLLSFFQELGANVGVSSGLINEVTPPWVVLLIGIVMNFFGYFMIWRG 85
           DIKS+LGYDQTTLNLLSFF++LGANVGV SGLINEVTPPWVVL IG VMNFFGYFMIW  
Sbjct: 50  DIKSVLGYDQTTLNLLSFFKDLGANVGVLSGLINEVTPPWVVLSIGAVMNFFGYFMIWLA 109

Query: 86  VTRRISASKV 96
           VT++ISA KV
Sbjct: 110 VTQKISAPKV 119

[Close]

BLAST of MELO3C012396 vs. ExPASy TrEMBL
Match: A0A6J1GZI8 (protein NUCLEAR FUSION DEFECTIVE 4-like OS=Cucurbita moschata OX=3662 GN=LOC111458291 PE=4 SV=1)

HSP 1 Score: 123.2 bits (308), Expect = 5.7e-25
Identity = 59/70 (84.29%), Postives = 64/70 (91.43%), Query Frame = 0


Query: 26  DIKSILGYDQTTLNLLSFFQELGANVGVSSGLINEVTPPWVVLLIGIVMNFFGYFMIWRG 85
           DIKS+LGYDQTTLNLLSFF++LGANVGV SGLINEVTPPWVVL IG VMNFFGYFMIW  
Sbjct: 50  DIKSVLGYDQTTLNLLSFFKDLGANVGVLSGLINEVTPPWVVLSIGAVMNFFGYFMIWLA 109

Query: 86  VTRRISASKV 96
           VTR+I+A KV
Sbjct: 110 VTRKIAAPKV 119

[Close]

BLAST of MELO3C012396 vs. ExPASy TrEMBL
Match: A0A5D3CFW3 (Protein NUCLEAR FUSION DEFECTIVE 4-like OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G002400 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 7.4e-25
Identity = 59/70 (84.29%), Postives = 63/70 (90.00%), Query Frame = 0


Query: 26  DIKSILGYDQTTLNLLSFFQELGANVGVSSGLINEVTPPWVVLLIGIVMNFFGYFMIWRG 85
           DIKS+LGYDQTTLNLLSFF++LGANVGV SGLINEVTPPWVVL IG V+NFFGYFMIW  
Sbjct: 50  DIKSVLGYDQTTLNLLSFFKDLGANVGVLSGLINEVTPPWVVLSIGAVLNFFGYFMIWLA 109

Query: 86  VTRRISASKV 96
           VTRRIS  KV
Sbjct: 110 VTRRISTPKV 119

[Close]

BLAST of MELO3C012396 vs. ExPASy TrEMBL
Match: A0A1S3BG09 (protein NUCLEAR FUSION DEFECTIVE 4-like OS=Cucumis melo OX=3656 GN=LOC103489435 PE=4 SV=1)

HSP 1 Score: 122.9 bits (307), Expect = 7.4e-25
Identity = 59/70 (84.29%), Postives = 63/70 (90.00%), Query Frame = 0


Query: 26  DIKSILGYDQTTLNLLSFFQELGANVGVSSGLINEVTPPWVVLLIGIVMNFFGYFMIWRG 85
           DIKS+LGYDQTTLNLLSFF++LGANVGV SGLINEVTPPWVVL IG V+NFFGYFMIW  
Sbjct: 50  DIKSVLGYDQTTLNLLSFFKDLGANVGVLSGLINEVTPPWVVLSIGAVLNFFGYFMIWLA 109

Query: 86  VTRRISASKV 96
           VTRRIS  KV
Sbjct: 110 VTRRISTPKV 119

[Close]

BLAST of MELO3C012396 vs. ExPASy TrEMBL
Match: A0A6J1K186 (protein NUCLEAR FUSION DEFECTIVE 4-like OS=Cucurbita maxima OX=3661 GN=LOC111489721 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.6e-24
Identity = 59/70 (84.29%), Postives = 63/70 (90.00%), Query Frame = 0


Query: 26  DIKSILGYDQTTLNLLSFFQELGANVGVSSGLINEVTPPWVVLLIGIVMNFFGYFMIWRG 85
           DIKS+LGYDQTTLNLLSFF++LGANVGV SGLINEVTPPWVVL IG VMNFFGYFMIW  
Sbjct: 50  DIKSVLGYDQTTLNLLSFFKDLGANVGVLSGLINEVTPPWVVLSIGAVMNFFGYFMIWLA 109

Query: 86  VTRRISASKV 96
           VT +ISA KV
Sbjct: 110 VTGKISAPKV 119

[Close]

BLAST of MELO3C012396 vs. ExPASy TrEMBL
Match: A0A6J1FZF2 (protein NUCLEAR FUSION DEFECTIVE 4 OS=Cucurbita moschata OX=3662 GN=LOC111449326 PE=4 SV=1)

HSP 1 Score: 121.7 bits (304), Expect = 1.6e-24
Identity = 58/70 (82.86%), Postives = 63/70 (90.00%), Query Frame = 0


Query: 26  DIKSILGYDQTTLNLLSFFQELGANVGVSSGLINEVTPPWVVLLIGIVMNFFGYFMIWRG 85
           DIKS+LGYDQTTLNLLSFF++LGANVGV SGLINEVTPPWVVL IG V+NFFGYFMIW  
Sbjct: 55  DIKSVLGYDQTTLNLLSFFKDLGANVGVLSGLINEVTPPWVVLSIGAVLNFFGYFMIWLA 114

Query: 86  VTRRISASKV 96
           VT+RIS  KV
Sbjct: 115 VTKRISTPKV 124

[Close]

BLAST of MELO3C012396 vs. TAIR 10
Match: AT2G39210.1 (Major facilitator superfamily protein )

HSP 1 Score: 115.9 bits (289), Expect = 1.7e-26
Identity = 53/71 (74.65%), Postives = 61/71 (85.92%), Query Frame = 0


Query: 25  GDIKSILGYDQTTLNLLSFFQELGANVGVSSGLINEVTPPWVVLLIGIVMNFFGYFMIWR 84
           GDIK  LGYDQTTLNLLSFF++LGANVGV +GL+NEVTPPW +LLIG ++NFFGYFMIW 
Sbjct: 46  GDIKETLGYDQTTLNLLSFFKDLGANVGVLAGLLNEVTPPWFILLIGAILNFFGYFMIWL 105

Query: 85  GVTRRISASKV 96
            VT RIS  +V
Sbjct: 106 AVTERISKPQV 116

[Close]

BLAST of MELO3C012396 vs. TAIR 10
Match: AT2G28120.1 (Major facilitator superfamily protein )

HSP 1 Score: 102.1 bits (253), Expect = 2.6e-22
Identity = 50/70 (71.43%), Postives = 55/70 (78.57%), Query Frame = 0


Query: 26  DIKSILGYDQTTLNLLSFFQELGANVGVSSGLINEVTPPWVVLLIGIVMNFFGYFMIWRG 85
           DIKS LGYDQTTLNLL FF++LGANVGV SGLI EVTP W VL IG  MNF GYFMIW  
Sbjct: 43  DIKSTLGYDQTTLNLLGFFKDLGANVGVLSGLIAEVTPTWFVLTIGSAMNFVGYFMIWLT 102

Query: 86  VTRRISASKV 96
           VT +++  KV
Sbjct: 103 VTGKVAKPKV 112

[Close]

BLAST of MELO3C012396 vs. TAIR 10
Match: AT1G18940.1 (Nodulin-like / Major Facilitator Superfamily protein )

HSP 1 Score: 66.6 bits (161), Expect = 1.2e-11
Identity = 34/83 (40.96%), Postives = 47/83 (56.63%), Query Frame = 0


Query: 27  IKSILGYDQTTLNLLSFFQELGANVGVSSGLINEVTP--------------PWVVLLIGI 86
           +KS   YDQ+TL+ +S F+++G NVGV SGL+                   PWVV+LIG 
Sbjct: 36  LKSTQSYDQSTLDTVSVFKDIGGNVGVLSGLVYTAATFNRRRRDGRERRGGPWVVILIGA 95

Query: 87  VMNFFGYFMIWRGVTRRISASKV 96
           ++NF GYF++W  VT  I    V
Sbjct: 96  ILNFTGYFLMWASVTGLIKRPPV 118

[Close]

BLAST of MELO3C012396 vs. TAIR 10
Match: AT5G50630.1 (Major facilitator superfamily protein )

HSP 1 Score: 62.4 bits (150), Expect = 2.3e-10
Identity = 29/64 (45.31%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 27  IKSILGYDQTTLNLLSFFQELGANVGVSSGLINEVTPPWVVLLIGIVMNFFGYFMIWRGV 86
           IK+ LGY+Q  + LL   + LG  +G  SG ++EV+P WVVLL+G   N FGY ++W  V
Sbjct: 44  IKTSLGYNQKQIALLGVAKNLGDAIGFVSGALSEVSPSWVVLLVGATQNLFGYGVVWLVV 103

Query: 87  TRRI 91
           T ++
Sbjct: 104 TGQL 107

[Close]

BLAST of MELO3C012396 vs. TAIR 10
Match: AT5G50520.1 (Major facilitator superfamily protein )

HSP 1 Score: 62.4 bits (150), Expect = 2.3e-10
Identity = 29/64 (45.31%), Postives = 42/64 (65.62%), Query Frame = 0


Query: 27  IKSILGYDQTTLNLLSFFQELGANVGVSSGLINEVTPPWVVLLIGIVMNFFGYFMIWRGV 86
           IK+ LGY+Q  + LL   + LG  +G  SG ++EV+P WVVLL+G   N FGY ++W  V
Sbjct: 44  IKTSLGYNQKQIALLGVAKNLGDAIGFVSGALSEVSPSWVVLLVGATQNLFGYGVVWLVV 103

Query: 87  TRRI 91
           T ++
Sbjct: 104 TGQL 107

The following BLAST results are available for this feature:

BLAST of MELO3C012396 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_004142499.3	5.2e-25	85.71	protein NUCLEAR FUSION DEFECTIVE 4-like [Cucumis sativus] >KAE8648849.1 hypothet...	[more]
XP_038893353.1	6.8e-25	84.29	LOW QUALITY PROTEIN: protein NUCLEAR FUSION DEFECTIVE 4-like [Benincasa hispida]	[more]
XP_031741159.1	6.8e-25	81.69	uncharacterized protein LOC101205029 [Cucumis sativus] >KAE8648846.1 hypothetica...	[more]
XP_022956604.1	1.2e-24	84.29	protein NUCLEAR FUSION DEFECTIVE 4-like [Cucurbita moschata]	[more]
XP_023535761.1	1.5e-24	84.29	protein NUCLEAR FUSION DEFECTIVE 4-like [Cucurbita pepo subsp. pepo]	[more]

BLAST of MELO3C012396 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C012396 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A6J1GZI8	5.7e-25	84.29	protein NUCLEAR FUSION DEFECTIVE 4-like OS=Cucurbita moschata OX=3662 GN=LOC1114...	[more]
A0A5D3CFW3	7.4e-25	84.29	Protein NUCLEAR FUSION DEFECTIVE 4-like OS=Cucumis melo var. makuwa OX=1194695 G...	[more]
A0A1S3BG09	7.4e-25	84.29	protein NUCLEAR FUSION DEFECTIVE 4-like OS=Cucumis melo OX=3656 GN=LOC103489435 ...	[more]
A0A6J1K186	1.6e-24	84.29	protein NUCLEAR FUSION DEFECTIVE 4-like OS=Cucurbita maxima OX=3661 GN=LOC111489...	[more]
A0A6J1FZF2	1.6e-24	82.86	protein NUCLEAR FUSION DEFECTIVE 4 OS=Cucurbita moschata OX=3662 GN=LOC111449326...	[more]

BLAST of MELO3C012396 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G39210.1	1.7e-26	74.65	Major facilitator superfamily protein	[more]
AT2G28120.1	2.6e-22	71.43	Major facilitator superfamily protein	[more]
AT1G18940.1	1.2e-11	40.96	Nodulin-like / Major Facilitator Superfamily protein	[more]
AT5G50630.1	2.3e-10	45.31	Major facilitator superfamily protein	[more]
AT5G50520.1	2.3e-10	45.31	Major facilitator superfamily protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR010658	Nodulin-like	PFAM	PF06813	Nodulin-like	coord: 23..92 e-value: 5.0E-25 score: 88.4
None	No IPR available	PANTHER	PTHR21576:SF122	MFS TRANSPORTER	coord: 25..94
None	No IPR available	PANTHER	PTHR21576	UNCHARACTERIZED NODULIN-LIKE PROTEIN	coord: 25..94

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C012396.1	MELO3C012396.1	mRNA