MELO3C012296 (gene) Melon (DHL92) v4

Overview


Name	MELO3C012296
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Increased rDNA silencing protein
Location	chr10: 1381648 .. 1382529 (+)
RNA-Seq Expression	MELO3C012296
Synteny	MELO3C012296

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

TCACAACAGTAACCAAGCATTATAAATACAAGCCTTTAGTTCGAATCTAAATCAACTTCCACAGCATGGTGCAAAATGGCTTCCTCCGCTGGTCTCCCTTCGTTCCATTATTTCCACCCTCCGTCTTCTCGGCAGCGAAGACCATCCGACCACTGCAGTGCTCCAAGATGCCACAGCAGGGCCGGCGATGAAGGTCCTCAACCACACGCACTACTCTATCTCTGTAATATCGACGATCTTCATCTCTTTAATTACTTCTTAAACACAAAATCTTTTTTTTCTATACATGTGCTGCAGAGAACGAGAAGGACATCGTGGAAGCGAATTTGACGGTGTTGAGAACGAGAATGGAGGATTTGAGGAAGAAAGAGCGACGGATTCCGATTCCGATTCCGATACGGCAGCGAGGAATGGAAGAATTTGATGATGGCCGGAGGTATTTGTCGTCGAAGTTGGATGGCGGTTGTTTTGATGGTAAGAAATTGAAAAATGGTGCCCTGATTTCAGGGTGTTTGGAGGTGGTGAGTACGGTTGGCGGTGCTGTTGGGCTTGTTTTCGTTGGTGGATCTTTAGGAATCTGTTTGGTTTCTTTTATAGTCCGTCATTTTTGGTGATTTTCGATAAGGGTTTATATATTTCATTTTTTGAAATTTTCATTTTTCAAAATCATTTGAAAAAAATATATTATGTTCCTTTTTGTTTTCAATTTTCAAAATGGTCACTTCCTTTCTTTTTGTTATTATTATTATTTTTGAAAAAATGTTTGGCTGTAATAATACATCTTTATTAATTAATTAATGTATATTATTATGGTCGTTTGTAATTATTTTATTTTCTAAATAGTAAAATATCAATCGAAATCATTAAATTTTCTTTGTTGTA

mRNA sequence

TCACAACAGTAACCAAGCATTATAAATACAAGCCTTTAGTTCGAATCTAAATCAACTTCCACAGCATGGTGCAAAATGGCTTCCTCCGCTGGTCTCCCTTCGTTCCATTATTTCCACCCTCCGTCTTCTCGGCAGCGAAGACCATCCGACCACTGCAGTGCTCCAAGATGCCACAGCAGGGCCGGCGATGAAGAGAACGAGAAGGACATCGTGGAAGCGAATTTGACGGTGTTGAGAACGAGAATGGAGGATTTGAGGAAGAAAGAGCGACGGATTCCGATTCCGATTCCGATACGGCAGCGAGGAATGGAAGAATTTGATGATGGCCGGAGGTATTTGTCGTCGAAGTTGGATGGCGGTTGTTTTGATGGTAAGAAATTGAAAAATGGTGCCCTGATTTCAGGGTGTTTGGAGGTGGTGAGTACGGTTGGCGGTGCTGTTGGGCTTGTTTTCGTTGGTGGATCTTTAGGAATCTGTTTGGTTTCTTTTATAGTCCGTCATTTTTGGTGATTTTCGATAAGGGTTTATATATTTCATTTTTTGAAATTTTCATTTTTCAAAATCATTTGAAAAAAATATATTATGTTCCTTTTTGTTTTCAATTTTCAAAATGGTCACTTCCTTTCTTTTTGTTATTATTATTATTTTTGAAAAAATGTTTGGCTGTAATAATACATCTTTATTAATTAATTAATGTATATTATTATGGTCGTTTGTAATTATTTTATTTTCTAAATAGTAAAATATCAATCGAAATCATTAAATTTTCTTTGTTGTA

Coding sequence (CDS)

ATGGCTTCCTCCGCTGGTCTCCCTTCGTTCCATTATTTCCACCCTCCGTCTTCTCGGCAGCGAAGACCATCCGACCACTGCAGTGCTCCAAGATGCCACAGCAGGGCCGGCGATGAAGAGAACGAGAAGGACATCGTGGAAGCGAATTTGACGGTGTTGAGAACGAGAATGGAGGATTTGAGGAAGAAAGAGCGACGGATTCCGATTCCGATTCCGATACGGCAGCGAGGAATGGAAGAATTTGATGATGGCCGGAGGTATTTGTCGTCGAAGTTGGATGGCGGTTGTTTTGATGGTAAGAAATTGAAAAATGGTGCCCTGATTTCAGGGTGTTTGGAGGTGGTGAGTACGGTTGGCGGTGCTGTTGGGCTTGTTTTCGTTGGTGGATCTTTAGGAATCTGTTTGGTTTCTTTTATAGTCCGTCATTTTTGGTGA

Protein sequence

MASSAGLPSFHYFHPPSSRQRRPSDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDLRKKERRIPIPIPIRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGGAVGLVFVGGSLGICLVSFIVRHFW

Homology

[Close]

BLAST of MELO3C012296 vs. NCBI nr
Match: XP_008446686.1 (PREDICTED: uncharacterized protein LOC103489333 [Cucumis melo] >KAA0034606.1 uncharacterized protein E6C27_scaffold65G006220 [Cucumis melo var. makuwa] >TYK09158.1 uncharacterized protein E5676_scaffold475G001490 [Cucumis melo var. makuwa])

HSP 1 Score: 290.4 bits (742), Expect = 8.4e-75
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MASSAGLPSFHYFHPPSSRQRRPSDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDL 60
           MASSAGLPSFHYFHPPSSRQRRPSDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDL
Sbjct: 1   MASSAGLPSFHYFHPPSSRQRRPSDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDL 60

Query: 61  RKKERRIPIPIPIRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGG 120
           RKKERRIPIPIPIRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGG
Sbjct: 61  RKKERRIPIPIPIRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGG 120

Query: 121 AVGLVFVGGSLGICLVSFIVRHFW 145
           AVGLVFVGGSLGICLVSFIVRHFW
Sbjct: 121 AVGLVFVGGSLGICLVSFIVRHFW 144

[Close]

BLAST of MELO3C012296 vs. NCBI nr
Match: XP_011655810.1 (uncharacterized protein LOC105435587 [Cucumis sativus] >KGN52133.1 hypothetical protein Csa_008386 [Cucumis sativus])

HSP 1 Score: 226.1 bits (575), Expect = 1.9e-55
Identity = 122/143 (85.31%), Postives = 125/143 (87.41%), Query Frame = 0


Query: 3   SSAGLPSFHYFHPPSSRQRRP-SDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDLR 62
           +SA LPSFHYFH PSS +RRP SDH SAPRCH RAGDEENEKDIVEANLTVLRTRMEDLR
Sbjct: 2   ASAPLPSFHYFHTPSSLRRRPLSDHRSAPRCHGRAGDEENEKDIVEANLTVLRTRMEDLR 61

Query: 63  KKERRIPIPIPIRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGGA 122
           KKER   IPI IRQRGMEE DDG RYL  KLDGGCFDGKK+KN  LISGCLEVVS VGGA
Sbjct: 62  KKER--GIPIQIRQRGMEELDDGGRYL-WKLDGGCFDGKKMKNCGLISGCLEVVSRVGGA 121

Query: 123 VGLVFVGGSLGICLVSFIVRHFW 145
           VGLVFVGGSLGIC VSFIVRHFW
Sbjct: 122 VGLVFVGGSLGICFVSFIVRHFW 141

[Close]

BLAST of MELO3C012296 vs. NCBI nr
Match: XP_038893300.1 (uncharacterized protein LOC120082131 isoform X1 [Benincasa hispida])

HSP 1 Score: 183.0 bits (463), Expect = 1.9e-42
Identity = 103/146 (70.55%), Postives = 114/146 (78.08%), Query Frame = 0


Query: 3   SSAGLPSFHYFHPPSSRQRRPSDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDLRK 62
           +SA  PSFH FH P S +RRPSDH  APRCH   GDEEN+KDIV+ANLTVLR RMEDLRK
Sbjct: 2   ASARFPSFH-FHSPVSTRRRPSDHRRAPRCHGGVGDEENQKDIVDANLTVLRARMEDLRK 61

Query: 63  KERRIPIPIPIRQRGMEEFDDGRRYLSSKLDGG----CFDGKKLKNGALISGCLEVVSTV 122
           KERRIP+P    +RG  EFD+G RYLS   DG      FDGK LK  ALI+GCLEVV+TV
Sbjct: 62  KERRIPLP---ARRGGLEFDNGWRYLSMS-DGAKFDRSFDGKILKKFALIAGCLEVVTTV 121

Query: 123 GGAVGLVFVGGSLGICLVSFIVRHFW 145
           GGAVGLVFVGGSLGICLV+ +VRHFW
Sbjct: 122 GGAVGLVFVGGSLGICLVALLVRHFW 142

[Close]

BLAST of MELO3C012296 vs. NCBI nr
Match: XP_022150638.1 (uncharacterized protein LOC111018723 [Momordica charantia])

HSP 1 Score: 147.1 bits (370), Expect = 1.1e-31
Identity = 91/145 (62.76%), Postives = 104/145 (71.72%), Query Frame = 0


Query: 2   ASSAGLPSFHYFHPPSSRQRRPSDHCSAPRCHSR-AGDEENEKDIVEANLTVLRTRMEDL 61
           ASSA L SFH+  P S R+R  +DH  APRCHS  + DEEN+KDIVEANLTVLR RMEDL
Sbjct: 5   ASSAPLCSFHFRSPSSWRRRPAADHRRAPRCHSGVSDDEENQKDIVEANLTVLRERMEDL 64

Query: 62  RKKERRIPIPIPIRQRGMEEFDDGRRYLS---SKLDGGCFDGKKLKNGALISGCLEVVST 121
           RKKERRIP        G  EFD+   Y+S   +KLD  C + K +KN ALIS CLEV+S 
Sbjct: 65  RKKERRIP-----ASGGRIEFDNCWSYMSRSDAKLDRDC-ERKMVKNFALISECLEVISM 124

Query: 122 VGGAVGLVFVGGSLGICLVSFIVRH 143
            GGAVGLV VGGSLGICLVS ++RH
Sbjct: 125 AGGAVGLVLVGGSLGICLVSLLIRH 143

[Close]

BLAST of MELO3C012296 vs. NCBI nr
Match: KAG6601256.1 (Tetratricopeptide repeat protein 5, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 111.3 bits (277), Expect = 7.0e-21
Identity = 68/119 (57.14%), Postives = 80/119 (67.23%), Query Frame = 0


Query: 13  FHPPSSRQRRPSDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDLRKKERRIPIPIP 72
           F+ PS  +RRPSDH  APRCH   GDE N+KDIVEANLTVL+ RMEDLRKKERRIP+P  
Sbjct: 14  FYAPSPWRRRPSDHRRAPRCHGGVGDEANQKDIVEANLTVLKARMEDLRKKERRIPLP-- 73

Query: 73  IRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVST---VGGAVGLVFVG 129
            ++ G  E D+G RY S++      D K +KN ALISGCLE +     VG A   V VG
Sbjct: 74  -KRLGGVEIDNGWRYRSTR--DAKLDSKVVKNFALISGCLEFLPASHLVGSAPRTVAVG 127

[Close]

BLAST of MELO3C012296 vs. ExPASy TrEMBL
Match: A0A5A7SXL4 (Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold475G001490 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 4.1e-75
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MASSAGLPSFHYFHPPSSRQRRPSDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDL 60
           MASSAGLPSFHYFHPPSSRQRRPSDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDL
Sbjct: 1   MASSAGLPSFHYFHPPSSRQRRPSDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDL 60

Query: 61  RKKERRIPIPIPIRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGG 120
           RKKERRIPIPIPIRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGG
Sbjct: 61  RKKERRIPIPIPIRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGG 120

Query: 121 AVGLVFVGGSLGICLVSFIVRHFW 145
           AVGLVFVGGSLGICLVSFIVRHFW
Sbjct: 121 AVGLVFVGGSLGICLVSFIVRHFW 144

[Close]

BLAST of MELO3C012296 vs. ExPASy TrEMBL
Match: A0A1S3BFP0 (uncharacterized protein LOC103489333 OS=Cucumis melo OX=3656 GN=LOC103489333 PE=4 SV=1)

HSP 1 Score: 290.4 bits (742), Expect = 4.1e-75
Identity = 144/144 (100.00%), Postives = 144/144 (100.00%), Query Frame = 0


Query: 1   MASSAGLPSFHYFHPPSSRQRRPSDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDL 60
           MASSAGLPSFHYFHPPSSRQRRPSDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDL
Sbjct: 1   MASSAGLPSFHYFHPPSSRQRRPSDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDL 60

Query: 61  RKKERRIPIPIPIRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGG 120
           RKKERRIPIPIPIRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGG
Sbjct: 61  RKKERRIPIPIPIRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGG 120

Query: 121 AVGLVFVGGSLGICLVSFIVRHFW 145
           AVGLVFVGGSLGICLVSFIVRHFW
Sbjct: 121 AVGLVFVGGSLGICLVSFIVRHFW 144

[Close]

BLAST of MELO3C012296 vs. ExPASy TrEMBL
Match: A0A0A0KRA6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G611640 PE=4 SV=1)

HSP 1 Score: 226.1 bits (575), Expect = 9.4e-56
Identity = 122/143 (85.31%), Postives = 125/143 (87.41%), Query Frame = 0


Query: 3   SSAGLPSFHYFHPPSSRQRRP-SDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDLR 62
           +SA LPSFHYFH PSS +RRP SDH SAPRCH RAGDEENEKDIVEANLTVLRTRMEDLR
Sbjct: 2   ASAPLPSFHYFHTPSSLRRRPLSDHRSAPRCHGRAGDEENEKDIVEANLTVLRTRMEDLR 61

Query: 63  KKERRIPIPIPIRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGGA 122
           KKER   IPI IRQRGMEE DDG RYL  KLDGGCFDGKK+KN  LISGCLEVVS VGGA
Sbjct: 62  KKER--GIPIQIRQRGMEELDDGGRYL-WKLDGGCFDGKKMKNCGLISGCLEVVSRVGGA 121

Query: 123 VGLVFVGGSLGICLVSFIVRHFW 145
           VGLVFVGGSLGIC VSFIVRHFW
Sbjct: 122 VGLVFVGGSLGICFVSFIVRHFW 141

[Close]

BLAST of MELO3C012296 vs. ExPASy TrEMBL
Match: A0A6J1D9Z1 (uncharacterized protein LOC111018723 OS=Momordica charantia OX=3673 GN=LOC111018723 PE=4 SV=1)

HSP 1 Score: 147.1 bits (370), Expect = 5.5e-32
Identity = 91/145 (62.76%), Postives = 104/145 (71.72%), Query Frame = 0


Query: 2   ASSAGLPSFHYFHPPSSRQRRPSDHCSAPRCHSR-AGDEENEKDIVEANLTVLRTRMEDL 61
           ASSA L SFH+  P S R+R  +DH  APRCHS  + DEEN+KDIVEANLTVLR RMEDL
Sbjct: 5   ASSAPLCSFHFRSPSSWRRRPAADHRRAPRCHSGVSDDEENQKDIVEANLTVLRERMEDL 64

Query: 62  RKKERRIPIPIPIRQRGMEEFDDGRRYLS---SKLDGGCFDGKKLKNGALISGCLEVVST 121
           RKKERRIP        G  EFD+   Y+S   +KLD  C + K +KN ALIS CLEV+S 
Sbjct: 65  RKKERRIP-----ASGGRIEFDNCWSYMSRSDAKLDRDC-ERKMVKNFALISECLEVISM 124

Query: 122 VGGAVGLVFVGGSLGICLVSFIVRH 143
            GGAVGLV VGGSLGICLVS ++RH
Sbjct: 125 AGGAVGLVLVGGSLGICLVSLLIRH 143

[Close]

BLAST of MELO3C012296 vs. ExPASy TrEMBL
Match: A0A2R6QQP7 (Increased rDNA silencing protein OS=Actinidia chinensis var. chinensis OX=1590841 GN=CEY00_Acc14068 PE=4 SV=1)

HSP 1 Score: 55.1 bits (131), Expect = 2.9e-04
Identity = 45/137 (32.85%), Postives = 68/137 (49.64%), Query Frame = 0


Query: 4   SAGLPSFHYFHPPSSRQRRPSDHCSAPRCHSRAGDEENEKDIVEANLTVLRTRMEDLRKK 63
           +  LPSF     PS + + P   C   RC S   DE N  ++V+ANL VLR R+ +++KK
Sbjct: 2   ATSLPSFCSLTKPSHKPKLPK--CPPVRCQSFHNDEGNSANMVDANLGVLRERIREVKKK 61

Query: 64  ERRIPIPIPIRQRGMEEFDDGRRYLSSKLDGGCFDGKKLKNGALISGCLEVVSTVGGAVG 123
           E               + ++G  Y S       +D K   +G  +S  +E++  V  ++G
Sbjct: 62  E---------SLERCFKHENGWNYKSG------YDNKHKVHGK-VSESIELLGLVSSSLG 120

Query: 124 LVFVGGSLGICLVSFIV 141
            VF+ GS  I LVSF+V
Sbjct: 122 FVFLFGSFSILLVSFVV 120

The following BLAST results are available for this feature:

BLAST of MELO3C012296 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008446686.1	8.4e-75	100.00	PREDICTED: uncharacterized protein LOC103489333 [Cucumis melo] >KAA0034606.1 unc...	[more]
XP_011655810.1	1.9e-55	85.31	uncharacterized protein LOC105435587 [Cucumis sativus] >KGN52133.1 hypothetical ...	[more]
XP_038893300.1	1.9e-42	70.55	uncharacterized protein LOC120082131 isoform X1 [Benincasa hispida]	[more]
XP_022150638.1	1.1e-31	62.76	uncharacterized protein LOC111018723 [Momordica charantia]	[more]
KAG6601256.1	7.0e-21	57.14	Tetratricopeptide repeat protein 5, partial [Cucurbita argyrosperma subsp. soror...	[more]

BLAST of MELO3C012296 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C012296 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SXL4	4.1e-75	100.00	Uncharacterized protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A1S3BFP0	4.1e-75	100.00	uncharacterized protein LOC103489333 OS=Cucumis melo OX=3656 GN=LOC103489333 PE=...	[more]
A0A0A0KRA6	9.4e-56	85.31	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_5G611640 PE=4 SV=1	[more]
A0A6J1D9Z1	5.5e-32	62.76	uncharacterized protein LOC111018723 OS=Momordica charantia OX=3673 GN=LOC111018...	[more]
A0A2R6QQP7	2.9e-04	32.85	Increased rDNA silencing protein OS=Actinidia chinensis var. chinensis OX=159084...	[more]

BLAST of MELO3C012296 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	COILS	Coil	Coil	coord: 43..63
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..40
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 18..40
None	No IPR available	PANTHER	PTHR38225:SF3	SUBFAMILY NOT NAMED	coord: 1..144
None	No IPR available	PANTHER	PTHR38225	PROTEIN, PUTATIVE-RELATED	coord: 1..144

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C012296.1	MELO3C012296.1	mRNA