MELO3C011727.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C011727.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	RNA-binding (RRM/RBD/RNP motifs) family protein
Location	chr10: 5410762 .. 5413116 (-)
RNA-Seq Expression	MELO3C011727.jh1
Synteny	MELO3C011727.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonpolypeptideCDSstart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

AACTTAATTACTTCTAATTACTTCCTTACCTTGTTTTGTTCCATGACGATGATGACCACCACCACCAACAGTAATACCAATGCAGGTTTGTTCGGGGATACCACTTTGACGAAAGTCTTCGTTGGTGGGTTAGCTTGGGAAACACCAAAGGAAGCCATGAGAGATCACTTCCAGAAGTTCGGTGAAATTCTCGAAGCGGTTATAATCTCTGATAAACTCACCGGCAGATCCAAGGGATATGGATTCGTAAGTGATGCAGTAATTAGCGATTGATTGATTGATTGATCTCTGTTTTGTTTGTTTGATTGATTTACGGTTTTGGATTTTTTAGGTTACATTCAAAGACGCGGAATCGGCGAAGAAAGCTTGTGAGGATTCGGCTCCGATCATCAATGGCCGTCGAGCTAACTGTAATCTCGCTTCACTTGGAGCTCGGCGCGGCGGTTCTAGGTCGGCTTCCGCTACTCCTCCTCAAGCTCCTCAACCAGGTTAAAAAAAAAAAACTTCCGAGTTCTTCCGATCATCAACGGCATTTTCGTAATCTTTTTGTTGATGGAGATCTGAATTTGGTTTGTAATATTTTGAAGGATCGAACGGTGGAGGACCGAGAACGACAACAGCAGCAACCGCACCGGGAAATCACGTGCAGTGGTATTACCCGGCGGGGACTCATCCAACGCCGTTTCATCATCAGCCTCATCAACCGGTCCCTTTTTATGGGTATACCTTAAGATCCCATATTCTGTTGCGCACTCTAATTTCCCCCATTTTGTTTAATCGACGTTTAATCAAATTAAATGTAAGTTTTCATTTTCTTTTAGATATTCCCCAAGCCCCACATACATCGCAACCGATATCAGTTACAACCACGTAAGCCACCCCCCTTTATTCCTTTATTTTATTTAAATAAATTAATAAGACATAAGTTAGTTAAAACGGCGACGTTTTTTGGTTTTAAATGCACAGAAATTGGGGTATGTGAACGGACATTACACACAAATGTATCCAGGGCAGGCGGCTATGGTAGGGGCGAACACATTGATGCCAATGTACCCGCTGTATCATTACCATCAATCACACGCCATGGGGATGCCGGCCCACATCTTCCCTCCTAGTCCCACGACGGCGGGCCCCTTCGCCGCTGTCCCACCCACTTCCATTATGTCCAAACCAACCACCGTTGGTCCCAACCCAGGTCCGTTTTTTACTTAACCCTTCTCAAATTATTGTAAATTGTTGGCGTCTGCACATTGTTTTTGGTCATTGCATGTGGTAAAAAAAAAAAAAAGAACAGAACAGAACAGAAAAAAACACGAAAAATGGTCAATAGTCAAACGTTATTAACAAGAAGAGAGAGAGAGAGAAAAAAAAAAGAGGGCGGGGGTGCAAAAAACAACAGATCAGAGTGGTCGTTGTTCACGTGAAAGGGTGATTTAGTAAAAAGTGTCTTCTCCGTCAGTGCCAACTGGCATGGCTGGGTCCCACGTGGCCAGCTTGATTCGCCGGTCGTGCGTTGGTCTAGCTGTCCCTACCCCCCCAATTCCCTTAATAATCCTTAACTTGAAGGACTATTTTGCAATATAATATCAACTACTTTTCTAGATTCCTGAATGCTTATATTGTAGAGATAATGAAAACATTATTTTAATCCTTATCCAAGCATAAAAAACATTATTTGAAGTGAAGTATTGTAAATTTCTAAACAAGCGTTTATTTCTTGTTGAGCATGTTGGTTGTATTATCAATGTTTGTTTTAAATGAAGTGTAATTGTGGAGTAAAAAATAATGCTTGATCATTAAACTGATATTACAAAGAAACAGTTTGCTTGGTTGTGGAATAAATAGGTACAGTTGGAGGCAGGGGATGAAGAAGAAGAAGAAGATGATGATGATGATGATGCATGGTAAAAGAAGAGCAGAGTAGTATAAAAATGGGGACAGGGCAGGCTAAGAGGGACTATTTTTTTTATTAAAAAAAAATTTCTTTTTTAAATTTTTAATCAGAACATCTCATTCTCTTAGTACATGGCAGGCAAGAAAAAAGAAAAAGAAAAATAACAGAGACAATGTGAAGCTGGTTGAGGGGGGCTGCTCAGAACTACATTATTTTTAGGCTGATCTGTTGTAGCTCTTTATTTATTTCTTTCTTCTTTTAATTATAAAAAAAAAAAAAAAAAACTAATTTTATTGTTTTTTTCCCTCTTCATTTTTCTCTCCTCCCCTCTTATTTTCACAAACAAACACGTCTAAATATTACTTTCATTTAGGTAATTTCGACTATCCTAAAAATGTTCATTTTCAACGAGTATAAATTAAATAACATTGTATGTGCAAAAGACCGTTTGTGGTTCAAAA

mRNA sequence

AACTTAATTACTTCTAATTACTTCCTTACCTTGTTTTGTTCCATGACGATGATGACCACCACCACCAACAGTAATACCAATGCAGGTTTGTTCGGGGATACCACTTTGACGAAAGTCTTCGTTGGTGGGTTAGCTTGGGAAACACCAAAGGAAGCCATGAGAGATCACTTCCAGAAGTTCGGTGAAATTCTCGAAGCGGTTATAATCTCTGATAAACTCACCGGCAGATCCAAGGGATATGGATTCGTTACATTCAAAGACGCGGAATCGGCGAAGAAAGCTTGTGAGGATTCGGCTCCGATCATCAATGGCCGTCGAGCTAACTGTAATCTCGCTTCACTTGGAGCTCGGCGCGGCGGTTCTAGGTCGGCTTCCGCTACTCCTCCTCAAGCTCCTCAACCAGGATCGAACGGTGGAGGACCGAGAACGACAACAGCAGCAACCGCACCGGGAAATCACGTGCAGTGGTATTACCCGGCGGGGACTCATCCAACGCCGTTTCATCATCAGCCTCATCAACCGGTCCCTTTTTATGGATATTCCCCAAGCCCCACATACATCGCAACCGATATCAGTTACAACCACAAATTGGGGTATGTGAACGGACATTACACACAAATGTATCCAGGGCAGGCGGCTATGGTAGGGGCGAACACATTGATGCCAATGTACCCGCTGTATCATTACCATCAATCACACGCCATGGGGATGCCGGCCCACATCTTCCCTCCTAGTCCCACGACGGCGGGCCCCTTCGCCGCTGTCCCACCCACTTCCATTATGTCCAAACCAACCACCGTTGGTCCCAACCCAGTTTGCTTGGTTGTGGAATAAATAGGTACAGTTGGAGGCAGGGGATGAAGAAGAAGAAGAAGATGATGATGATGATGATGCATGGTAAAAGAAGAGCAGAGTAGTATAAAAATGGGGACAGGGCAGGCTAAGAGGGACTATTTTTTTTATTAAAAAAAAATTTCTTTTTTAAATTTTTAATCAGAACATCTCATTCTCTTAGTACATGGCAGGCAAGAAAAAAGAAAAAGAAAAATAACAGAGACAATGTGAAGCTGGTTGAGGGGGGCTGCTCAGAACTACATTATTTTTAGGCTGATCTGTTGTAGCTCTTTATTTATTTCTTTCTTCTTTTAATTATAAAAAAAAAAAAAAAAAACTAATTTTATTGTTTTTTTCCCTCTTCATTTTTCTCTCCTCCCCTCTTATTTTCACAAACAAACACGTCTAAATATTACTTTCATTTAGGTAATTTCGACTATCCTAAAAATGTTCATTTTCAACGAGTATAAATTAAATAACATTGTATGTGCAAAAGACCGTTTGTGGTTCAAAA

Coding sequence (CDS)

ATGACGATGATGACCACCACCACCAACAGTAATACCAATGCAGGTTTGTTCGGGGATACCACTTTGACGAAAGTCTTCGTTGGTGGGTTAGCTTGGGAAACACCAAAGGAAGCCATGAGAGATCACTTCCAGAAGTTCGGTGAAATTCTCGAAGCGGTTATAATCTCTGATAAACTCACCGGCAGATCCAAGGGATATGGATTCGTTACATTCAAAGACGCGGAATCGGCGAAGAAAGCTTGTGAGGATTCGGCTCCGATCATCAATGGCCGTCGAGCTAACTGTAATCTCGCTTCACTTGGAGCTCGGCGCGGCGGTTCTAGGTCGGCTTCCGCTACTCCTCCTCAAGCTCCTCAACCAGGATCGAACGGTGGAGGACCGAGAACGACAACAGCAGCAACCGCACCGGGAAATCACGTGCAGTGGTATTACCCGGCGGGGACTCATCCAACGCCGTTTCATCATCAGCCTCATCAACCGGTCCCTTTTTATGGATATTCCCCAAGCCCCACATACATCGCAACCGATATCAGTTACAACCACAAATTGGGGTATGTGAACGGACATTACACACAAATGTATCCAGGGCAGGCGGCTATGGTAGGGGCGAACACATTGATGCCAATGTACCCGCTGTATCATTACCATCAATCACACGCCATGGGGATGCCGGCCCACATCTTCCCTCCTAGTCCCACGACGGCGGGCCCCTTCGCCGCTGTCCCACCCACTTCCATTATGTCCAAACCAACCACCGTTGGTCCCAACCCAGTTTGCTTGGTTGTGGAATAA

Protein sequence

MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLGYVNGHYTQMYPGQAAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTSIMSKPTTVGPNPVCLVVE

Homology

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BLAST of MELO3C011727.jh1 vs. NCBI nr
Match: XP_008445853.2 (PREDICTED: probable RNA-binding protein ARP1 isoform X2 [Cucumis melo])

HSP 1 Score: 532 bits (1370), Expect = 1.18e-190
Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 0


Query: 1   MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLT 60
           MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLT
Sbjct: 1   MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLT 60

Query: 61  GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQP 120
           GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQP
Sbjct: 61  GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQP 120

Query: 121 GSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYN 180
           GSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYN
Sbjct: 121 GSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYN 180

Query: 181 HKLGYVNGHYTQMYPGQAAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAA 240
           HKLGYVNGHYTQMYPGQAAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAA
Sbjct: 181 HKLGYVNGHYTQMYPGQAAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAA 240

Query: 241 VPPTSIMSKPTTVGPNPVCLVVE 263
           VPPTSIMSKPTTVGPNPVCLVVE
Sbjct: 241 VPPTSIMSKPTTVGPNPVCLVVE 263

[Close]

BLAST of MELO3C011727.jh1 vs. NCBI nr
Match: XP_008445852.2 (PREDICTED: probable RNA-binding protein ARP1 isoform X1 [Cucumis melo])

HSP 1 Score: 521 bits (1341), Expect = 3.24e-186
Identity = 257/257 (100.00%), Postives = 257/257 (100.00%), Query Frame = 0


Query: 1   MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLT 60
           MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLT
Sbjct: 1   MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLT 60

Query: 61  GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQP 120
           GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQP
Sbjct: 61  GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQP 120

Query: 121 GSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYN 180
           GSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYN
Sbjct: 121 GSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYN 180

Query: 181 HKLGYVNGHYTQMYPGQAAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAA 240
           HKLGYVNGHYTQMYPGQAAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAA
Sbjct: 181 HKLGYVNGHYTQMYPGQAAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAA 240

Query: 241 VPPTSIMSKPTTVGPNP 257
           VPPTSIMSKPTTVGPNP
Sbjct: 241 VPPTSIMSKPTTVGPNP 257

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BLAST of MELO3C011727.jh1 vs. NCBI nr
Match: KAA0034049.1 (putative RNA-binding protein ARP1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 519 bits (1337), Expect = 1.23e-185
Identity = 256/257 (99.61%), Postives = 256/257 (99.61%), Query Frame = 0


Query: 1   MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLT 60
           MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLT
Sbjct: 1   MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLT 60

Query: 61  GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQP 120
           GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQP
Sbjct: 61  GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQP 120

Query: 121 GSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYN 180
           GSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYN
Sbjct: 121 GSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYN 180

Query: 181 HKLGYVNGHYTQMYPGQAAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAA 240
           HKLGYVNGHYTQMYPGQAAMVG NTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAA
Sbjct: 181 HKLGYVNGHYTQMYPGQAAMVGVNTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAA 240

Query: 241 VPPTSIMSKPTTVGPNP 257
           VPPTSIMSKPTTVGPNP
Sbjct: 241 VPPTSIMSKPTTVGPNP 257

[Close]

BLAST of MELO3C011727.jh1 vs. NCBI nr
Match: XP_011654915.1 (probable RNA-binding protein ARP1 isoform X2 [Cucumis sativus] >KAE8647967.1 hypothetical protein Csa_000221 [Cucumis sativus])

HSP 1 Score: 512 bits (1319), Expect = 7.60e-183
Identity = 257/266 (96.62%), Postives = 260/266 (97.74%), Query Frame = 0


Query: 1   MTMMTTTTNSN---TNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISD 60
           MTMMTTTTN+N   TNAGLFGDTTLTKVFVGGLAWETPKEAMRDHF KFGEILEAVIISD
Sbjct: 1   MTMMTTTTNNNNSSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISD 60

Query: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 120
           KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA
Sbjct: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 120

Query: 121 PQPGSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180
           PQPGSN GGPRTT+AATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI
Sbjct: 121 PQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180

Query: 181 SYNHKLGYVNGHYTQMYPGQAAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGP 240
           SYNHKLGY+NGHYTQMYPGQA MVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGP
Sbjct: 181 SYNHKLGYMNGHYTQMYPGQA-MVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGP 240

Query: 241 FAAVPPTSIMSKPTTVGPNPVCLVVE 263
           FAAVPPTSIMSKPTTVGPNPVCLVVE
Sbjct: 241 FAAVPPTSIMSKPTTVGPNPVCLVVE 265

[Close]

BLAST of MELO3C011727.jh1 vs. NCBI nr
Match: XP_038891950.1 (probable RNA-binding protein ARP1 isoform X2 [Benincasa hispida])

HSP 1 Score: 504 bits (1297), Expect = 1.59e-179
Identity = 251/264 (95.08%), Postives = 257/264 (97.35%), Query Frame = 0


Query: 1   MTMMTTTTNSNTN-AGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKL 60
           MTMM+TTTNSN N AGLFGDTTLTKVFVGGLAWETPKEAMRDHF+KFGEILEAVIISDKL
Sbjct: 1   MTMMSTTTNSNNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKL 60

Query: 61  TGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQ 120
           TGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQ
Sbjct: 61  TGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQ 120

Query: 121 PGSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISY 180
           PGSNGGGPRTT+A   PGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISY
Sbjct: 121 PGSNGGGPRTTSATATPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISY 180

Query: 181 NHKLGYVNGHYTQMYPGQAAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFA 240
           NHKLGY+NGHYTQMYPGQA MVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFA
Sbjct: 181 NHKLGYMNGHYTQMYPGQA-MVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFA 240

Query: 241 AVPPTSIMSKPTTVGPNPVCLVVE 263
           AVPP+SIMSKP +VGPNPVCLVVE
Sbjct: 241 AVPPSSIMSKPASVGPNPVCLVVE 263

[Close]

BLAST of MELO3C011727.jh1 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 221.9 bits (564), Expect = 8.8e-57
Identity = 140/265 (52.83%), Postives = 168/265 (63.40%), Query Frame = 0


Query: 7   TTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLTGRSKGY 66
           TT++N N G FGDT LTKVFVGGLAW+T KEAM DHF K+G+ILEAVIISDKLT RSKGY
Sbjct: 2   TTSNNVN-GCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGY 61

Query: 67  GFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNGGG 126
           GFVTFKDA++A +ACEDS PIINGRRANCNLASLG R    +S + T PQ         G
Sbjct: 62  GFVTFKDAKAATRACEDSTPIINGRRANCNLASLGGRL--RKSPTMTSPQQ--------G 121

Query: 127 PRTTTAATAP--GNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLG 186
           P+    AT P  GNH QWYYP+G        Q HQ VPFYGY PS  Y+A ++++N K+G
Sbjct: 122 PKNGNRATPPHVGNHSQWYYPSGFTNQQHQQQNHQAVPFYGY-PS-AYVAPNMTFNQKVG 181

Query: 187 YV-----NGHYTQMYP-----------------GQAAMVG-ANTLMPMYPLYHYHQSHAM 246
           YV     NG+Y QM P                 G   MVG A+ ++P Y +Y YHQS A+
Sbjct: 182 YVGGTYMNGYYAQMQPQPQSQPQPQYYHHHMYGGGRVMVGAASPMVPFYTVYPYHQSQAI 241

[Close]

BLAST of MELO3C011727.jh1 vs. ExPASy Swiss-Prot
Match: Q5ZJX4 (RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 9.1e-22
Identity = 48/85 (56.47%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 19  DTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAK 78
           DTT TK+FVGGL + T   ++R +F+ FG+I EAV+I+D+ TG+S+GYGFVT  D  +A+
Sbjct: 7   DTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 79  KACEDSAPIINGRRANCNLASLGAR 104
           +AC+D  PII+GR+AN NLA LGA+
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]

BLAST of MELO3C011727.jh1 vs. ExPASy Swiss-Prot
Match: Q6GQD3 (RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.7e-21
Identity = 52/103 (50.49%), Postives = 72/103 (69.90%), Query Frame = 0


Query: 19  DTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAK 78
           DTT TK+FVGGL + T   ++R +F+ FG+I EAV+I+D+ TG+S+GYGFVT  D  +A+
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 79  KACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPG 122
           +AC+D  PII+GR+AN NLA LGA+           P+  QPG
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAK-----------PRIMQPG 98

[Close]

BLAST of MELO3C011727.jh1 vs. ExPASy Swiss-Prot
Match: Q9I8B3 (RNA-binding protein 24-B OS=Xenopus laevis OX=8355 GN=rbm24-b PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.7e-21
Identity = 52/103 (50.49%), Postives = 72/103 (69.90%), Query Frame = 0


Query: 19  DTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAK 78
           DTT TK+FVGGL + T   ++R +F+ FG+I EAV+I+D+ TG+S+GYGFVT  D  +A+
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 79  KACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPG 122
           +AC+D  PII+GR+AN NLA LGA+           P+  QPG
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAK-----------PRIMQPG 98

[Close]

BLAST of MELO3C011727.jh1 vs. ExPASy Swiss-Prot
Match: Q5ZMA3 (RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2)

HSP 1 Score: 104.0 bits (258), Expect = 2.7e-21
Identity = 52/103 (50.49%), Postives = 72/103 (69.90%), Query Frame = 0


Query: 19  DTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAK 78
           DTT TK+FVGGL + T   ++R +F+ FG+I EAV+I+D+ TG+S+GYGFVT  D  +A+
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 79  KACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPG 122
           +AC+D  PII+GR+AN NLA LGA+           P+  QPG
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAK-----------PRIMQPG 98

[Close]

BLAST of MELO3C011727.jh1 vs. ExPASy TrEMBL
Match: A0A1S3BD62 (probable RNA-binding protein ARP1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488745 PE=4 SV=1)

HSP 1 Score: 532 bits (1370), Expect = 5.73e-191
Identity = 263/263 (100.00%), Postives = 263/263 (100.00%), Query Frame = 0


Query: 1   MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLT 60
           MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLT
Sbjct: 1   MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLT 60

Query: 61  GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQP 120
           GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQP
Sbjct: 61  GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQP 120

Query: 121 GSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYN 180
           GSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYN
Sbjct: 121 GSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYN 180

Query: 181 HKLGYVNGHYTQMYPGQAAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAA 240
           HKLGYVNGHYTQMYPGQAAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAA
Sbjct: 181 HKLGYVNGHYTQMYPGQAAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAA 240

Query: 241 VPPTSIMSKPTTVGPNPVCLVVE 263
           VPPTSIMSKPTTVGPNPVCLVVE
Sbjct: 241 VPPTSIMSKPTTVGPNPVCLVVE 263

[Close]

BLAST of MELO3C011727.jh1 vs. ExPASy TrEMBL
Match: A0A1S3BEI0 (probable RNA-binding protein ARP1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488745 PE=4 SV=1)

HSP 1 Score: 521 bits (1341), Expect = 1.57e-186
Identity = 257/257 (100.00%), Postives = 257/257 (100.00%), Query Frame = 0


Query: 1   MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLT 60
           MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLT
Sbjct: 1   MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLT 60

Query: 61  GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQP 120
           GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQP
Sbjct: 61  GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQP 120

Query: 121 GSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYN 180
           GSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYN
Sbjct: 121 GSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYN 180

Query: 181 HKLGYVNGHYTQMYPGQAAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAA 240
           HKLGYVNGHYTQMYPGQAAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAA
Sbjct: 181 HKLGYVNGHYTQMYPGQAAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAA 240

Query: 241 VPPTSIMSKPTTVGPNP 257
           VPPTSIMSKPTTVGPNP
Sbjct: 241 VPPTSIMSKPTTVGPNP 257

[Close]

BLAST of MELO3C011727.jh1 vs. ExPASy TrEMBL
Match: A0A5A7SY01 (Putative RNA-binding protein ARP1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G00350 PE=4 SV=1)

HSP 1 Score: 519 bits (1337), Expect = 5.94e-186
Identity = 256/257 (99.61%), Postives = 256/257 (99.61%), Query Frame = 0


Query: 1   MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLT 60
           MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLT
Sbjct: 1   MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLT 60

Query: 61  GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQP 120
           GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQP
Sbjct: 61  GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQP 120

Query: 121 GSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYN 180
           GSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYN
Sbjct: 121 GSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYN 180

Query: 181 HKLGYVNGHYTQMYPGQAAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAA 240
           HKLGYVNGHYTQMYPGQAAMVG NTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAA
Sbjct: 181 HKLGYVNGHYTQMYPGQAAMVGVNTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAA 240

Query: 241 VPPTSIMSKPTTVGPNP 257
           VPPTSIMSKPTTVGPNP
Sbjct: 241 VPPTSIMSKPTTVGPNP 257

[Close]

BLAST of MELO3C011727.jh1 vs. ExPASy TrEMBL
Match: A0A0A0KNL6 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G175910 PE=4 SV=1)

HSP 1 Score: 501 bits (1290), Expect = 1.01e-178
Identity = 251/260 (96.54%), Postives = 254/260 (97.69%), Query Frame = 0


Query: 1   MTMMTTTTNSN---TNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISD 60
           MTMMTTTTN+N   TNAGLFGDTTLTKVFVGGLAWETPKEAMRDHF KFGEILEAVIISD
Sbjct: 1   MTMMTTTTNNNNSSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISD 60

Query: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 120
           KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA
Sbjct: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 120

Query: 121 PQPGSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180
           PQPGSN GGPRTT+AATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI
Sbjct: 121 PQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDI 180

Query: 181 SYNHKLGYVNGHYTQMYPGQAAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGP 240
           SYNHKLGY+NGHYTQMYPGQA MVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGP
Sbjct: 181 SYNHKLGYMNGHYTQMYPGQA-MVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGP 240

Query: 241 FAAVPPTSIMSKPTTVGPNP 257
           FAAVPPTSIMSKPTTVGPNP
Sbjct: 241 FAAVPPTSIMSKPTTVGPNP 259

[Close]

BLAST of MELO3C011727.jh1 vs. ExPASy TrEMBL
Match: A0A6J1CCJ5 (probable RNA-binding protein ARP1 OS=Momordica charantia OX=3673 GN=LOC111010248 PE=4 SV=1)

HSP 1 Score: 443 bits (1140), Expect = 5.64e-156
Identity = 226/259 (87.26%), Postives = 240/259 (92.66%), Query Frame = 0


Query: 9   NSNTNAGL-FGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLTGRSKGYG 68
           N++ NAGL FGDTTLTKVFVGGLAWETPKEAMRDHF+KFGEILEAVIISDKLTGRSKGYG
Sbjct: 3   NNSNNAGLMFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYG 62

Query: 69  FVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQ-PGSNGGG 128
           FVTFKDAESAKKACED+APIINGRRANCNLASLGARRG   +++ATPPQAP  PGSNGGG
Sbjct: 63  FVTFKDAESAKKACEDAAPIINGRRANCNLASLGARRGSRSASAATPPQAPPLPGSNGGG 122

Query: 129 PRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLGYV 188
              +T+A +P NHVQWYYPAGT PTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKL Y+
Sbjct: 123 GARSTSAASP-NHVQWYYPAGTPPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLSYM 182

Query: 189 NG--HYTQMYPGQAAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPT 248
           NG  HY+Q+YPGQA MVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPT AGPFAAVPPT
Sbjct: 183 NGGGHYSQVYPGQA-MVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTAAGPFAAVPPT 242

Query: 249 SIMSKPTTVGPNPVCLVVE 263
           SIMSKP +VGPNPVCLVVE
Sbjct: 243 SIMSKPASVGPNPVCLVVE 259

[Close]

BLAST of MELO3C011727.jh1 vs. TAIR 10
Match: AT3G54770.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 221.9 bits (564), Expect = 6.2e-58
Identity = 140/265 (52.83%), Postives = 168/265 (63.40%), Query Frame = 0


Query: 7   TTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLTGRSKGY 66
           TT++N N G FGDT LTKVFVGGLAW+T KEAM DHF K+G+ILEAVIISDKLT RSKGY
Sbjct: 2   TTSNNVN-GCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGY 61

Query: 67  GFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNGGG 126
           GFVTFKDA++A +ACEDS PIINGRRANCNLASLG R    +S + T PQ         G
Sbjct: 62  GFVTFKDAKAATRACEDSTPIINGRRANCNLASLGGRL--RKSPTMTSPQQ--------G 121

Query: 127 PRTTTAATAP--GNHVQWYYPAGTHPTPFHHQPHQPVPFYGYSPSPTYIATDISYNHKLG 186
           P+    AT P  GNH QWYYP+G        Q HQ VPFYGY PS  Y+A ++++N K+G
Sbjct: 122 PKNGNRATPPHVGNHSQWYYPSGFTNQQHQQQNHQAVPFYGY-PS-AYVAPNMTFNQKVG 181

Query: 187 YV-----NGHYTQMYP-----------------GQAAMVG-ANTLMPMYPLYHYHQSHAM 246
           YV     NG+Y QM P                 G   MVG A+ ++P Y +Y YHQS A+
Sbjct: 182 YVGGTYMNGYYAQMQPQPQSQPQPQYYHHHMYGGGRVMVGAASPMVPFYTVYPYHQSQAI 241

[Close]

BLAST of MELO3C011727.jh1 vs. TAIR 10
Match: AT3G54770.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 173.7 bits (439), Expect = 1.9e-43
Identity = 111/231 (48.05%), Postives = 133/231 (57.58%), Query Frame = 0


Query: 39  MRDHFQKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLA 98
           M DHF K+G+ILEAVIISDKLT RSKGYGFVTFKDA++A +ACEDS PIINGRRANCNLA
Sbjct: 1   MYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTPIINGRRANCNLA 60

Query: 99  SLGARRGGSRSASATPPQAPQPGSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPH 158
           SLG R        ATPP                     GNH QWYYP+G        Q H
Sbjct: 61  SLGGRLRPKNGNRATPPHV-------------------GNHSQWYYPSGFTNQQHQQQNH 120

Query: 159 QPVPFYGYSPSPTYIATDISYNHKLGYV-----NGHYTQMYP-----------------G 218
           Q VPFYGY PS  Y+A ++++N K+GYV     NG+Y QM P                 G
Sbjct: 121 QAVPFYGY-PS-AYVAPNMTFNQKVGYVGGTYMNGYYAQMQPQPQSQPQPQYYHHHMYGG 180

Query: 219 QAAMVG-ANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFA-AVPPTS 246
              MVG A+ ++P Y +Y YHQS A+G       P P+ + P + + PP S
Sbjct: 181 GRVMVGAASPMVPFYTVYPYHQSQAIGF------PQPSFSKPLSFSTPPIS 204

[Close]

BLAST of MELO3C011727.jh1 vs. TAIR 10
Match: AT1G22910.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 152.5 bits (384), Expect = 4.6e-37
Identity = 99/235 (42.13%), Postives = 125/235 (53.19%), Query Frame = 0


Query: 18  GDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLTGRSKGYGFVTFKDAESA 77
           GDTT TKVFVGGLAWET KE M+ HF++FGEILEAV+I+DK +GRSKGYGFVTF++AE+A
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 78  KKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNGGGPRTTTAATAPG 137
           + AC D+ P+I+GRRANCNLASLG +R        + P  P  G  GGG           
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQR--------SKPSTPNHG--GGGRINNMRVMMST 127

Query: 138 NHVQWYYPAGTHPTPFHHQPHQPVPFYGYSP-SPTYIATDISYNHKLGYVNGHYTQMY-- 197
               +  P    P  F H PH P+  +GYSP SP Y +   +     G  +G    +Y  
Sbjct: 128 MQTGFGPPPPPQPPTFTHYPHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSGGQYGVYGN 187

Query: 198 ---PGQAAMVGANTLMPMY---------------PLYHYHQSHAMGMPAHIFPPS 232
               G      A +  P Y               P YH+  S+    P H  PP+
Sbjct: 188 RNSGGGGLTAAAASATPFYPCGGGHGGVQFSQPQPFYHHLSSY---NPHHYSPPT 229

[Close]

BLAST of MELO3C011727.jh1 vs. TAIR 10
Match: AT1G22910.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 149.8 bits (377), Expect = 3.0e-36
Identity = 102/244 (41.80%), Postives = 128/244 (52.46%), Query Frame = 0


Query: 18  GDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLTGRSKGYGFVTFKDAESA 77
           GDTT TKVFVGGLAWET KE M+ HF++FGEILEAV+I+DK +GRSKGYGFVTF++AE+A
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 78  KKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNGGGPRTTTAATAPG 137
           + AC D+ P+I+GRRANCNLASLG +R        + P  P  G  GGG           
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQR--------SKPSTPNHG--GGGRINNMRVMMST 127

Query: 138 NHVQWYYPAGTHPTPFHHQPHQPVPFYGYSP-SPTYIATDISYNHKLGYVNGHYTQMY-- 197
               +  P    P  F H PH P+  +GYSP SP Y +   +     G  +G    +Y  
Sbjct: 128 MQTGFGPPPPPQPPTFTHYPHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSGGQYGVYGN 187

Query: 198 ---PGQAAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTSIMSKPT 256
               G      A +  P YP    H       P   F    ++  P    PPT  M +  
Sbjct: 188 RNSGGGGLTAAAASATPFYPCGGGHGGVQFSQP-QPFYHHLSSYNPHHYSPPTFSMQQGV 240

[Close]

BLAST of MELO3C011727.jh1 vs. TAIR 10
Match: AT1G22910.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 149.4 bits (376), Expect = 3.9e-36
Identity = 102/244 (41.80%), Postives = 128/244 (52.46%), Query Frame = 0


Query: 18  GDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLTGRSKGYGFVTFKDAESA 77
           GDTT TKVFVGGLAWET KE M+ HF++FGEILEAV+I+DK +GRSKGYGFVTF++AE+A
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 78  KKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNGGGPRTTTAATAPG 137
           + AC D+ P+I+GRRANCNLASLG +R        + P  P  G  GGG           
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQR--------SKPSTPNHG--GGGRINNMRVMMST 127

Query: 138 NHVQWYYPAGTHPTPFHHQPHQPVPFYGYSP-SPTYIATDISYNHKLGYVNGHYTQMY-- 197
               +  P    P  F H PH P+  +GYSP SP Y +   +     G  +G    +Y  
Sbjct: 128 MQTGFGPPPPPQPPTFTHYPHLPLNLFGYSPYSPDYSSFPTNLYGMYGCTSGGQYGVYGN 187

Query: 198 ---PGQAAMVGANTLMPMYPLYHYHQSHAMGMPAHIFPPSPTTAGPFAAVPPTSIMSKPT 256
               G      A +  P YP    H       P   F    ++  P    PPT  M +  
Sbjct: 188 RNSGGGGLTAAAASATPFYPCGGGHGGVQFSQP-QPFYHHLSSYNPHHYSPPTFSMQQVC 240

The following BLAST results are available for this feature:

BLAST of MELO3C011727.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008445853.2	1.18e-190	100.00	PREDICTED: probable RNA-binding protein ARP1 isoform X2 [Cucumis melo]	[more]
XP_008445852.2	3.24e-186	100.00	PREDICTED: probable RNA-binding protein ARP1 isoform X1 [Cucumis melo]	[more]
KAA0034049.1	1.23e-185	99.61	putative RNA-binding protein ARP1 isoform X1 [Cucumis melo var. makuwa]	[more]
XP_011654915.1	7.60e-183	96.62	probable RNA-binding protein ARP1 isoform X2 [Cucumis sativus] >KAE8647967.1 hyp...	[more]
XP_038891950.1	1.59e-179	95.08	probable RNA-binding protein ARP1 isoform X2 [Benincasa hispida]	[more]

BLAST of MELO3C011727.jh1 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1S3	8.8e-57	52.83	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
Q5ZJX4	9.1e-22	56.47	RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1	[more]
Q6GQD3	2.7e-21	50.49	RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1	[more]
Q9I8B3	2.7e-21	50.49	RNA-binding protein 24-B OS=Xenopus laevis OX=8355 GN=rbm24-b PE=2 SV=1	[more]
Q5ZMA3	2.7e-21	50.49	RNA-binding protein 24 OS=Gallus gallus OX=9031 GN=RBM24 PE=1 SV=2	[more]

BLAST of MELO3C011727.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A1S3BD62	5.73e-191	100.00	probable RNA-binding protein ARP1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
A0A1S3BEI0	1.57e-186	100.00	probable RNA-binding protein ARP1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
A0A5A7SY01	5.94e-186	99.61	Putative RNA-binding protein ARP1 isoform X1 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A0A0KNL6	1.01e-178	96.54	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G175910 PE=4 SV...	[more]
A0A6J1CCJ5	5.64e-156	87.26	probable RNA-binding protein ARP1 OS=Momordica charantia OX=3673 GN=LOC111010248...	[more]

BLAST of MELO3C011727.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54770.1	6.2e-58	52.83	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G54770.2	1.9e-43	48.05	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.3	4.6e-37	42.13	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.1	3.0e-36	41.80	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.2	3.9e-36	41.80	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 24..96 e-value: 2.2E-23 score: 93.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 25..82 e-value: 1.1E-17 score: 63.6
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 23..100 score: 17.25057
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 4..113 e-value: 2.5E-24 score: 87.8
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 109..134
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 101..134
None	No IPR available	PANTHER	PTHR48024:SF23	RNA-BINDING PROTEIN ARP1-RELATED	coord: 4..257
None	No IPR available	PANTHER	PTHR48024	GEO13361P1-RELATED	coord: 4..257
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 23..98 e-value: 2.94798E-42 score: 137.361
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 21..126

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C011727.jh1.t1	MELO3C011727.jh1.t1	mRNA
MELO3C011727.jh1.t2	MELO3C011727.jh1.t2	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding