MELO3C011727 (gene) Melon (DHL92) v4

Overview


Name	MELO3C011727
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	RNA-binding (RRM/RBD/RNP motifs) family protein
Location	chr10: 5352891 .. 5355118 (-)
RNA-Seq Expression	MELO3C011727
Synteny	MELO3C011727

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRpolypeptideCDSthree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CACAACACTTCTCTTATTTAACCTTCTTCTTCTCTCCATCACCACCATTTTTCCCCATTTTAACTTAATTACTTCTAATTACTTCCTTACCTTGTTTTGTTCCATGACGATGATGACCACCACCACCAACAGTAATACCAATGCAGGTTTGTTCGGGGATACCACTTTGACGAAAGTCTTCGTTGGTGGGTTAGCTTGGGAAACACCAAAGGAAGCCATGAGAGATCACTTCCAGAAGTTCGGTGAAATTCTCGAAGCGGTTATAATCTCTGATAAACTCACCGGCAGATCCAAGGGATATGGATTCGTAAGTGATGCAGTAATTAGCGATTGATTGATTGATTGATCTCTGTTTTGTTTGTTTGATTGATTTACGGTTTTGGATTTTTTAGGTTACATTCAAAGACGCGGAATCGGCGAAGAAAGCTTGTGAGGATTCGGCTCCGATCATCAATGGCCGTCGAGCTAACTGTAATCTCGCTTCACTTGGAGCTCGGCGCGGCGGTTCTAGGTCGGCTTCCGCTACTCCTCCTCAAGCTCCTCAACCAGGTTAAAAAAAAAAAAAAAAAACTTCCGAGTTCTTCCGATCATCAACGGCATTTTCGTAATCTTTTTGTTGATGGAGATCTGAATTTGGTTTGTAATATTTTGAAGGATCGAACGGTGGAGGACCGAGAACGACAACAGCAGCAACCGCACCGGGAAATCACGTGCAGTGGTATTACCCGGCGGGGACTCATCCAACGCCGTTTCATCATCAGCCTCATCAACCGGTCCCTTTTTATGGGTATACCTTAAGATCCCATATTCTGTTGCGCACTCTAATTTCCCCCATTTTGTTTAATCGACGTTTAATCAAATTAAATGTAAGTTTTCATTTTCTTTTAGATATTCCCCAAGCCCCACATACATCGCAACCGATATCAGTTACAACCACGTAAGCCACCCCCCTTTATTCCTTTATTTTATTTAAATAAATTAATAAGACATAAGTTAGTTAAAACGGCGACGTTTTTTGGTTTTAAATGCACAGAAATTGGGGTATGTGAACGGACATTACACACAAATGTATCCAGGGCAGGCGGCTATGGTAGGGGCGAACACATTGATGCCAATGTACCCGCTGTATCATTACCATCAATCACACGCCATGGGGATGCCGGCCCACATCTTCCCTCCTAGTCCCACGACGGCGGGCCCCTTCGCCGCTGTCCCACCCACTTCCATTATGTCCAAACCAACCACCGTTGGTCCCAACCCAGGTCCGTTTTTTACTTAACCCTTCTCAAATTATTGTAAATTGTTGGCGTCTGCACATTGTTTTTGGTCATTGCATGTGGTAAAAAAAAAAAAAAGAACAGAACAGAACAGAAAAAAACACGAAAAATGGTCAATAGTCAAACGTTATTAACAAGAAGAGAGAGAGAGAGAAAAAAAAAAGAGGGCGGGGGTGCAAAAAACAACAGATCAGAGTGGTCGTTGTTCACGTGAAAGGGTGATTTAGTAAAAAGTGTCTTCTCCGTCAGTGCCAACTGGCATGGCTGGGTCCCACGTGGCCAGCTTGATTCGCCGGTCGTGCGTTGGTCTAGCTGTCCCTACCCCCCCAATTCCCTTAATAATCCTTAACTTGAAGGACTATTTTGCAATATAATATCAACTACTTTTCTAGATTCCTGAATGCTTATATTGTAGAGATAATGAAAACATTATTTTAATCCTTATCCAAGCATAAAAAACATTATTTGAAGTGAAGTATTGTAAATTTCTAAACAAGCGTTTATTTCTTGTTGAGCATGTTGGTTGTATTATCAATGTTTGTTTTAAATGAAGTGTAATTGTGGAGTAAAAAATAATGCTTGATCATTAAACTGATATTACAAAGAAACAGTTTGCTTGGTTGTGGAATAAATAGGTACAGTTGGAGGCAGGGGATGAAGAAGAAGAAGAAGATGATGATGATGATGATGCATGGTAAAAGAAGAGCAGAGTAGTATAAAAATGGGGACAGGGCAGGCTAAGAGGGACTATTTTTTTTATTAAAAAAAAATTTCTTTTTTAAATTTTTAATCAGAACATCTCATTCTCTTAGTACATGGCAGGCAAGAAAAAAGAAAAAGAAAAATAACAGAGACAATGTGAAGCTGGTTGAGGGGGGCTGCTCAGAACTACATTATTTTTAGGCTGATCTGTTGTAGCTCTTTATTTATTTCTTTCTTCTTTTAATTATA

mRNA sequence

CACAACACTTCTCTTATTTAACCTTCTTCTTCTCTCCATCACCACCATTTTTCCCCATTTTAACTTAATTACTTCTAATTACTTCCTTACCTTGTTTTGTTCCATGACGATGATGACCACCACCACCAACAGTAATACCAATGCAGGTTTGTTCGGGGATACCACTTTGACGAAAGTCTTCGTTGGTGGGTTAGCTTGGGAAACACCAAAGGAAGCCATGAGAGATCACTTCCAGAAGTTCGGTGAAATTCTCGAAGCGGTTATAATCTCTGATAAACTCACCGGCAGATCCAAGGGATATGGATTCGTTACATTCAAAGACGCGGAATCGGCGAAGAAAGCTTGTGAGGATTCGGCTCCGATCATCAATGGCCGTCGAGCTAACTGTAATCTCGCTTCACTTGGAGCTCGGCGCGGCGGTTCTAGGTCGGCTTCCGCTACTCCTCCTCAAGCTCCTCAACCAGGATCGAACGGTGGAGGACCGAGAACGACAACAGCAGCAACCGCACCGGGAAATCACGTGCAGTGGTATTACCCGGCGGGGACTCATCCAACGCCGTTTCATCATCAGCCTCATCAACCGGTCCCTTTTTATGGGTATACCTTAAGATCCCATATTCTGTTGCGCACTCTAATTTCCCCCATTTTGTTTAATCGACGTTTAATCAAATTAAATGTAAGTTTTCATTTTCTTTTAGATATTCCCCAAGCCCCACATACATCGCAACCGATATCAGTTACAACCACGTAAGCCACCCCCCTTTATTCCTTTATTTTATTTAAATAAATTAATAAGACATAAGTTAGTTAAAACGGCGACGTTTTTTGGTTTTAAATGCACAGAAATTGGGGTATGTGAACGGACATTACACACAAATGTATCCAGGGCAGGCGGCTATGGTAGGGGCGAACACATTGATGCCAATGTACCCGCTGTATCATTACCATCAATCACACGCCATGGGGATGCCGGCCCACATCTTCCCTCCTAGTCCCACGACGGCGGGCCCCTTCGCCGCTGTCCCACCCACTTCCATTATGTCCAAACCAACCACCGTTGGTCCCAACCCAGGTACAGTTGGAGGCAGGGGATGAAGAAGAAGAAGAAGATGATGATGATGATGATGCATGGTAAAAGAAGAGCAGAGTAGTATAAAAATGGGGACAGGGCAGGCTAAGAGGGACTATTTTTTTTATTAAAAAAAAATTTCTTTTTTAAATTTTTAATCAGAACATCTCATTCTCTTAGTACATGGCAGGCAAGAAAAAAGAAAAAGAAAAATAACAGAGACAATGTGAAGCTGGTTGAGGGGGGCTGCTCAGAACTACATTATTTTTAGGCTGATCTGTTGTAGCTCTTTATTTATTTCTTTCTTCTTTTAATTATA

Coding sequence (CDS)

ACAACACTTCTCTTATTTAACCTTCTTCTTCTCTCCATCACCACCATTTTTCCCCATTTTAACTTAATTACTTCTAATTACTTCCTTACCTTGTTTTGTTCCATGACGATGATGACCACCACCACCAACAGTAATACCAATGCAGGTTTGTTCGGGGATACCACTTTGACGAAAGTCTTCGTTGGTGGGTTAGCTTGGGAAACACCAAAGGAAGCCATGAGAGATCACTTCCAGAAGTTCGGTGAAATTCTCGAAGCGGTTATAATCTCTGATAAACTCACCGGCAGATCCAAGGGATATGGATTCGTTACATTCAAAGACGCGGAATCGGCGAAGAAAGCTTGTGAGGATTCGGCTCCGATCATCAATGGCCGTCGAGCTAACTGTAATCTCGCTTCACTTGGAGCTCGGCGCGGCGGTTCTAGGTCGGCTTCCGCTACTCCTCCTCAAGCTCCTCAACCAGGATCGAACGGTGGAGGACCGAGAACGACAACAGCAGCAACCGCACCGGGAAATCACGTGCAGTGGTATTACCCGGCGGGGACTCATCCAACGCCGTTTCATCATCAGCCTCATCAACCGGTCCCTTTTTATGGGTATACCTTAAGATCCCATATTCTGTTGCGCACTCTAATTTCCCCCATTTTGTTTAATCGACGTTTAATCAAATTAAATGTAAGTTTTCATTTTCTTTTAGATATTCCCCAAGCCCCACATACATCGCAACCGATATCAGTTACAACCACGTAA

Protein sequence

TTLLLFNLLLLSITTIFPHFNLITSNYFLTLFCSMTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYTLRSHILLRTLISPILFNRRLIKLNVSFHFLLDIPQAPHTSQPISVTTT

Homology

[Close]

BLAST of MELO3C011727 vs. NCBI nr
Match: XP_008445853.2 (PREDICTED: probable RNA-binding protein ARP1 isoform X2 [Cucumis melo])

HSP 1 Score: 337.0 bits (863), Expect = 1.3e-88
Identity = 166/167 (99.40%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 35  MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLT 94
           MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLT
Sbjct: 1   MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLT 60

Query: 95  GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQP 154
           GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQP
Sbjct: 61  GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQP 120

Query: 155 GSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYT 202
           GSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGY+
Sbjct: 121 GSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYS 167

[Close]

BLAST of MELO3C011727 vs. NCBI nr
Match: XP_008445852.2 (PREDICTED: probable RNA-binding protein ARP1 isoform X1 [Cucumis melo])

HSP 1 Score: 337.0 bits (863), Expect = 1.3e-88
Identity = 166/167 (99.40%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 35  MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLT 94
           MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLT
Sbjct: 1   MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLT 60

Query: 95  GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQP 154
           GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQP
Sbjct: 61  GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQP 120

Query: 155 GSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYT 202
           GSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGY+
Sbjct: 121 GSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYS 167

[Close]

BLAST of MELO3C011727 vs. NCBI nr
Match: KAA0034049.1 (putative RNA-binding protein ARP1 isoform X1 [Cucumis melo var. makuwa])

HSP 1 Score: 337.0 bits (863), Expect = 1.3e-88
Identity = 166/167 (99.40%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 35  MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLT 94
           MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLT
Sbjct: 1   MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLT 60

Query: 95  GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQP 154
           GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQP
Sbjct: 61  GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQP 120

Query: 155 GSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYT 202
           GSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGY+
Sbjct: 121 GSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYS 167

[Close]

BLAST of MELO3C011727 vs. NCBI nr
Match: XP_004143608.1 (probable RNA-binding protein ARP1 isoform X1 [Cucumis sativus])

HSP 1 Score: 324.7 bits (831), Expect = 6.9e-85
Identity = 162/170 (95.29%), Postives = 165/170 (97.06%), Query Frame = 0


Query: 35  MTMMTTTTNSN---TNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISD 94
           MTMMTTTTN+N   TNAGLFGDTTLTKVFVGGLAWETPKEAMRDHF KFGEILEAVIISD
Sbjct: 1   MTMMTTTTNNNNSSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISD 60

Query: 95  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 154
           KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA
Sbjct: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 120

Query: 155 PQPGSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYT 202
           PQPGSN GGPRTT+AATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGY+
Sbjct: 121 PQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYS 170

[Close]

BLAST of MELO3C011727 vs. NCBI nr
Match: XP_011654915.1 (probable RNA-binding protein ARP1 isoform X2 [Cucumis sativus] >KAE8647967.1 hypothetical protein Csa_000221 [Cucumis sativus])

HSP 1 Score: 324.7 bits (831), Expect = 6.9e-85
Identity = 162/170 (95.29%), Postives = 165/170 (97.06%), Query Frame = 0


Query: 35  MTMMTTTTNSN---TNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISD 94
           MTMMTTTTN+N   TNAGLFGDTTLTKVFVGGLAWETPKEAMRDHF KFGEILEAVIISD
Sbjct: 1   MTMMTTTTNNNNSSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISD 60

Query: 95  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 154
           KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA
Sbjct: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 120

Query: 155 PQPGSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYT 202
           PQPGSN GGPRTT+AATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGY+
Sbjct: 121 PQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYS 170

[Close]

BLAST of MELO3C011727 vs. ExPASy Swiss-Prot
Match: Q9M1S3 (Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 SV=1)

HSP 1 Score: 188.0 bits (476), Expect = 1.3e-46
Identity = 105/162 (64.81%), Postives = 117/162 (72.22%), Query Frame = 0


Query: 41  TTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLTGRSKGY 100
           TT++N N G FGDT LTKVFVGGLAW+T KEAM DHF K+G+ILEAVIISDKLT RSKGY
Sbjct: 2   TTSNNVN-GCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGY 61

Query: 101 GFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNGGG 160
           GFVTFKDA++A +ACEDS PIINGRRANCNLASLG R    +S + T PQ         G
Sbjct: 62  GFVTFKDAKAATRACEDSTPIINGRRANCNLASLGGRL--RKSPTMTSPQQ--------G 121

Query: 161 PRTTTAATAP--GNHVQWYYPAGTHPTPFHHQPHQPVPFYGY 201
           P+    AT P  GNH QWYYP+G        Q HQ VPFYGY
Sbjct: 122 PKNGNRATPPHVGNHSQWYYPSGFTNQQHQQQNHQAVPFYGY 152

[Close]

BLAST of MELO3C011727 vs. ExPASy Swiss-Prot
Match: Q5ZJX4 (RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1)

HSP 1 Score: 105.5 bits (262), Expect = 8.7e-22
Identity = 48/85 (56.47%), Postives = 67/85 (78.82%), Query Frame = 0


Query: 53  DTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAK 112
           DTT TK+FVGGL + T   ++R +F+ FG+I EAV+I+D+ TG+S+GYGFVT  D  +A+
Sbjct: 7   DTTFTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 113 KACEDSAPIINGRRANCNLASLGAR 138
           +AC+D  PII+GR+AN NLA LGA+
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAK 91

[Close]

BLAST of MELO3C011727 vs. ExPASy Swiss-Prot
Match: Q76LC6 (RNA-binding protein 24 OS=Danio rerio OX=7955 GN=rbm24 PE=2 SV=1)

HSP 1 Score: 105.1 bits (261), Expect = 1.1e-21
Identity = 55/110 (50.00%), Postives = 74/110 (67.27%), Query Frame = 0


Query: 53  DTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAK 112
           DTT TK+FVGGL + T   ++R +F+ FGEI EAV+I+D+ TG+S+GYGFVT  D  +A 
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRSAAD 66

Query: 113 KACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNGGGPR 163
           +AC+D  PII+GR+AN NLA LGA+           P+  QPG   G P+
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAK-----------PRVMQPGFTFGVPQ 105

[Close]

BLAST of MELO3C011727 vs. ExPASy Swiss-Prot
Match: Q9BX46 (RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1)

HSP 1 Score: 104.8 bits (260), Expect = 1.5e-21
Identity = 53/103 (51.46%), Postives = 72/103 (69.90%), Query Frame = 0


Query: 53  DTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAK 112
           DTT TK+FVGGL + T   ++R +F+ FGEI EAV+I+D+ TG+S+GYGFVT  D  +A+
Sbjct: 7   DTTYTKIFVGGLPYHTTDASLRKYFEVFGEIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 113 KACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPG 156
           +AC+D  PII+GR+AN NLA LGA+           P+  QPG
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAK-----------PRIMQPG 98

[Close]

BLAST of MELO3C011727 vs. ExPASy Swiss-Prot
Match: Q6GQD3 (RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1)

HSP 1 Score: 104.0 bits (258), Expect = 2.5e-21
Identity = 52/103 (50.49%), Postives = 72/103 (69.90%), Query Frame = 0


Query: 53  DTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAK 112
           DTT TK+FVGGL + T   ++R +F+ FG+I EAV+I+D+ TG+S+GYGFVT  D  +A+
Sbjct: 7   DTTYTKIFVGGLPYHTTDSSLRKYFEVFGDIEEAVVITDRQTGKSRGYGFVTMADRAAAE 66

Query: 113 KACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPG 156
           +AC+D  PII+GR+AN NLA LGA+           P+  QPG
Sbjct: 67  RACKDPNPIIDGRKANVNLAYLGAK-----------PRIMQPG 98

[Close]

BLAST of MELO3C011727 vs. ExPASy TrEMBL
Match: A0A5A7SY01 (Putative RNA-binding protein ARP1 isoform X1 OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold65G00350 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 6.5e-89
Identity = 166/167 (99.40%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 35  MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLT 94
           MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLT
Sbjct: 1   MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLT 60

Query: 95  GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQP 154
           GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQP
Sbjct: 61  GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQP 120

Query: 155 GSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYT 202
           GSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGY+
Sbjct: 121 GSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYS 167

[Close]

BLAST of MELO3C011727 vs. ExPASy TrEMBL
Match: A0A1S3BD62 (probable RNA-binding protein ARP1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC103488745 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 6.5e-89
Identity = 166/167 (99.40%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 35  MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLT 94
           MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLT
Sbjct: 1   MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLT 60

Query: 95  GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQP 154
           GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQP
Sbjct: 61  GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQP 120

Query: 155 GSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYT 202
           GSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGY+
Sbjct: 121 GSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYS 167

[Close]

BLAST of MELO3C011727 vs. ExPASy TrEMBL
Match: A0A1S3BEI0 (probable RNA-binding protein ARP1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC103488745 PE=4 SV=1)

HSP 1 Score: 337.0 bits (863), Expect = 6.5e-89
Identity = 166/167 (99.40%), Postives = 167/167 (100.00%), Query Frame = 0


Query: 35  MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLT 94
           MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLT
Sbjct: 1   MTMMTTTTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLT 60

Query: 95  GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQP 154
           GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQP
Sbjct: 61  GRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQP 120

Query: 155 GSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYT 202
           GSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGY+
Sbjct: 121 GSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYS 167

[Close]

BLAST of MELO3C011727 vs. ExPASy TrEMBL
Match: A0A0A0KNL6 (RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G175910 PE=4 SV=1)

HSP 1 Score: 324.7 bits (831), Expect = 3.4e-85
Identity = 162/170 (95.29%), Postives = 165/170 (97.06%), Query Frame = 0


Query: 35  MTMMTTTTNSN---TNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISD 94
           MTMMTTTTN+N   TNAGLFGDTTLTKVFVGGLAWETPKEAMRDHF KFGEILEAVIISD
Sbjct: 1   MTMMTTTTNNNNSSTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFHKFGEILEAVIISD 60

Query: 95  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 154
           KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA
Sbjct: 61  KLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQA 120

Query: 155 PQPGSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYT 202
           PQPGSN GGPRTT+AATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGY+
Sbjct: 121 PQPGSNAGGPRTTSAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYS 170

[Close]

BLAST of MELO3C011727 vs. ExPASy TrEMBL
Match: A0A6J1JR76 (probable RNA-binding protein ARP1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC111489087 PE=4 SV=1)

HSP 1 Score: 282.3 bits (721), Expect = 1.9e-72
Identity = 145/159 (91.19%), Postives = 150/159 (94.34%), Query Frame = 0


Query: 44  SNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLTGRSKGYGFV 103
           SN NAGLFGDTTLTKVFVGGLAWETPKEAMRDHF+KFGEILEAVIISDKLTGRSKGYGFV
Sbjct: 3   SNNNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFEKFGEILEAVIISDKLTGRSKGYGFV 62

Query: 104 TFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQ-PGSNGGGPR 163
           TFKDAESAKKACEDSAPIINGRRANCNLASLGARR GSRSASATPPQAPQ PGSNGGGPR
Sbjct: 63  TFKDAESAKKACEDSAPIINGRRANCNLASLGARR-GSRSASATPPQAPQHPGSNGGGPR 122

Query: 164 TTTAATAPGNHVQWYYPAGTHPTPFHHQPHQPVPFYGYT 202
           TT+A +  GNHVQWYYPAGT+PT F HQPHQ VPFYGY+
Sbjct: 123 TTSAPS--GNHVQWYYPAGTYPTSFRHQPHQAVPFYGYS 158

[Close]

BLAST of MELO3C011727 vs. TAIR 10
Match: AT3G54770.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 188.0 bits (476), Expect = 9.4e-48
Identity = 105/162 (64.81%), Postives = 117/162 (72.22%), Query Frame = 0


Query: 41  TTNSNTNAGLFGDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLTGRSKGY 100
           TT++N N G FGDT LTKVFVGGLAW+T KEAM DHF K+G+ILEAVIISDKLT RSKGY
Sbjct: 2   TTSNNVN-GCFGDTKLTKVFVGGLAWDTHKEAMYDHFIKYGDILEAVIISDKLTRRSKGY 61

Query: 101 GFVTFKDAESAKKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNGGG 160
           GFVTFKDA++A +ACEDS PIINGRRANCNLASLG R    +S + T PQ         G
Sbjct: 62  GFVTFKDAKAATRACEDSTPIINGRRANCNLASLGGRL--RKSPTMTSPQQ--------G 121

Query: 161 PRTTTAATAP--GNHVQWYYPAGTHPTPFHHQPHQPVPFYGY 201
           P+    AT P  GNH QWYYP+G        Q HQ VPFYGY
Sbjct: 122 PKNGNRATPPHVGNHSQWYYPSGFTNQQHQQQNHQAVPFYGY 152

[Close]

BLAST of MELO3C011727 vs. TAIR 10
Match: AT1G22910.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 147.1 bits (370), Expect = 1.8e-35
Identity = 79/150 (52.67%), Postives = 98/150 (65.33%), Query Frame = 0


Query: 52  GDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLTGRSKGYGFVTFKDAESA 111
           GDTT TKVFVGGLAWET KE M+ HF++FGEILEAV+I+DK +GRSKGYGFVTF++AE+A
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 112 KKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNGGGPRTTTAATAPG 171
           + AC D+ P+I+GRRANCNLASLG +R        + P  P  G  GGG           
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQR--------SKPSTPNHG--GGGRINNMRVMMST 127

Query: 172 NHVQWYYPAGTHPTPFHHQPHQPVPFYGYT 202
               +  P    P  F H PH P+  +GY+
Sbjct: 128 MQTGFGPPPPPQPPTFTHYPHLPLNLFGYS 147

[Close]

BLAST of MELO3C011727 vs. TAIR 10
Match: AT1G22910.1 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 147.1 bits (370), Expect = 1.8e-35
Identity = 79/150 (52.67%), Postives = 98/150 (65.33%), Query Frame = 0


Query: 52  GDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLTGRSKGYGFVTFKDAESA 111
           GDTT TKVFVGGLAWET KE M+ HF++FGEILEAV+I+DK +GRSKGYGFVTF++AE+A
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 112 KKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNGGGPRTTTAATAPG 171
           + AC D+ P+I+GRRANCNLASLG +R        + P  P  G  GGG           
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQR--------SKPSTPNHG--GGGRINNMRVMMST 127

Query: 172 NHVQWYYPAGTHPTPFHHQPHQPVPFYGYT 202
               +  P    P  F H PH P+  +GY+
Sbjct: 128 MQTGFGPPPPPQPPTFTHYPHLPLNLFGYS 147

[Close]

BLAST of MELO3C011727 vs. TAIR 10
Match: AT1G22910.3 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 147.1 bits (370), Expect = 1.8e-35
Identity = 79/150 (52.67%), Postives = 98/150 (65.33%), Query Frame = 0


Query: 52  GDTTLTKVFVGGLAWETPKEAMRDHFQKFGEILEAVIISDKLTGRSKGYGFVTFKDAESA 111
           GDTT TKVFVGGLAWET KE M+ HF++FGEILEAV+I+DK +GRSKGYGFVTF++AE+A
Sbjct: 8   GDTTYTKVFVGGLAWETHKETMKKHFEQFGEILEAVVITDKASGRSKGYGFVTFREAEAA 67

Query: 112 KKACEDSAPIINGRRANCNLASLGARRGGSRSASATPPQAPQPGSNGGGPRTTTAATAPG 171
           + AC D+ P+I+GRRANCNLASLG +R        + P  P  G  GGG           
Sbjct: 68  RSACVDATPVIDGRRANCNLASLGLQR--------SKPSTPNHG--GGGRINNMRVMMST 127

Query: 172 NHVQWYYPAGTHPTPFHHQPHQPVPFYGYT 202
               +  P    P  F H PH P+  +GY+
Sbjct: 128 MQTGFGPPPPPQPPTFTHYPHLPLNLFGYS 147

[Close]

BLAST of MELO3C011727 vs. TAIR 10
Match: AT3G54770.2 (RNA-binding (RRM/RBD/RNP motifs) family protein )

HSP 1 Score: 139.4 bits (350), Expect = 3.8e-33
Identity = 76/128 (59.38%), Postives = 82/128 (64.06%), Query Frame = 0


Query: 73  MRDHFQKFGEILEAVIISDKLTGRSKGYGFVTFKDAESAKKACEDSAPIINGRRANCNLA 132
           M DHF K+G+ILEAVIISDKLT RSKGYGFVTFKDA++A +ACEDS PIINGRRANCNLA
Sbjct: 1   MYDHFIKYGDILEAVIISDKLTRRSKGYGFVTFKDAKAATRACEDSTPIINGRRANCNLA 60

Query: 133 SLGARRGGSRSASATPPQAPQPGSNGGGPRTTTAATAPGNHVQWYYPAGTHPTPFHHQPH 192
           SLG R        ATPP                     GNH QWYYP+G        Q H
Sbjct: 61  SLGGRLRPKNGNRATPPHV-------------------GNHSQWYYPSGFTNQQHQQQNH 109

Query: 193 QPVPFYGY 201
           Q VPFYGY
Sbjct: 121 QAVPFYGY 109

The following BLAST results are available for this feature:

BLAST of MELO3C011727 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_008445853.2	1.3e-88	99.40	PREDICTED: probable RNA-binding protein ARP1 isoform X2 [Cucumis melo]	[more]
XP_008445852.2	1.3e-88	99.40	PREDICTED: probable RNA-binding protein ARP1 isoform X1 [Cucumis melo]	[more]
KAA0034049.1	1.3e-88	99.40	putative RNA-binding protein ARP1 isoform X1 [Cucumis melo var. makuwa]	[more]
XP_004143608.1	6.9e-85	95.29	probable RNA-binding protein ARP1 isoform X1 [Cucumis sativus]	[more]
XP_011654915.1	6.9e-85	95.29	probable RNA-binding protein ARP1 isoform X2 [Cucumis sativus] >KAE8647967.1 hyp...	[more]

BLAST of MELO3C011727 vs. ExPASy Swiss-Prot


Match Name	E-value	Identity	Description
Q9M1S3	1.3e-46	64.81	Probable RNA-binding protein ARP1 OS=Arabidopsis thaliana OX=3702 GN=ARP1 PE=2 S...	[more]
Q5ZJX4	8.7e-22	56.47	RNA-binding protein 38 OS=Gallus gallus OX=9031 GN=RBM38 PE=2 SV=1	[more]
Q76LC6	1.1e-21	50.00	RNA-binding protein 24 OS=Danio rerio OX=7955 GN=rbm24 PE=2 SV=1	[more]
Q9BX46	1.5e-21	51.46	RNA-binding protein 24 OS=Homo sapiens OX=9606 GN=RBM24 PE=1 SV=1	[more]
Q6GQD3	2.5e-21	50.49	RNA-binding protein 24-A OS=Xenopus laevis OX=8355 GN=rbm24-a PE=2 SV=1	[more]

BLAST of MELO3C011727 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7SY01	6.5e-89	99.40	Putative RNA-binding protein ARP1 isoform X1 OS=Cucumis melo var. makuwa OX=1194...	[more]
A0A1S3BD62	6.5e-89	99.40	probable RNA-binding protein ARP1 isoform X2 OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
A0A1S3BEI0	6.5e-89	99.40	probable RNA-binding protein ARP1 isoform X1 OS=Cucumis melo OX=3656 GN=LOC10348...	[more]
A0A0A0KNL6	3.4e-85	95.29	RRM domain-containing protein OS=Cucumis sativus OX=3659 GN=Csa_5G175910 PE=4 SV...	[more]
A0A6J1JR76	1.9e-72	91.19	probable RNA-binding protein ARP1 isoform X2 OS=Cucurbita maxima OX=3661 GN=LOC1...	[more]

BLAST of MELO3C011727 vs. TAIR 10


Match Name	E-value	Identity	Description
AT3G54770.1	9.4e-48	64.81	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.2	1.8e-35	52.67	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.1	1.8e-35	52.67	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT1G22910.3	1.8e-35	52.67	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]
AT3G54770.2	3.8e-33	59.38	RNA-binding (RRM/RBD/RNP motifs) family protein	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
IPR000504	RNA recognition motif domain	SMART	SM00360	rrm1_1	coord: 58..130 e-value: 2.2E-23 score: 93.7
IPR000504	RNA recognition motif domain	PFAM	PF00076	RRM_1	coord: 59..116 e-value: 9.9E-18 score: 63.8
IPR000504	RNA recognition motif domain	PROSITE	PS50102	RRM	coord: 57..134 score: 17.25057
IPR012677	Nucleotide-binding alpha-beta plait domain superfamily	GENE3D	3.30.70.330		coord: 37..147 e-value: 2.1E-24 score: 88.0
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 143..168
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 136..168
None	No IPR available	PANTHER	PTHR48024	GEO13361P1-RELATED	coord: 38..201
None	No IPR available	PANTHER	PTHR48024:SF23	RNA-BINDING PROTEIN ARP1-RELATED	coord: 38..201
None	No IPR available	CDD	cd12384	RRM_RBM24_RBM38_like	coord: 57..132 e-value: 5.60198E-42 score: 136.206
IPR035979	RNA-binding domain superfamily	SUPERFAMILY	54928	RNA-binding domain, RBD	coord: 55..160

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C011727.1	MELO3C011727.1	mRNA

GO Annotation

GO Assignments

This gene is annotated with the following GO terms.

Category	Term Accession	Term Name
molecular_function	GO:0003676	nucleic acid binding