MELO3C011581 (gene) Melon (DHL92) v4

Overview
NameMELO3C011581
Typegene
OrganismCucumis melo cv. DHL92 (Melon (DHL92) v4)
DescriptionRetrotransposon protein
Locationchr03: 13452371 .. 13452793 (+)
RNA-Seq ExpressionMELO3C011581
SyntenyMELO3C011581
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGCGGTGGCCAGCATGCAGTGGGTTCTGCTGGAACGATGATGTAAAATACATAATTACGGAGAAGCAAGTCGTCGATAACTGGGTTAGGGTAAGGAAAATAATCTAAATGTGACACTACTTGCGCATTGTACATTTAGTTTACAATTTCTGTATAAGTAGTTTTAAGTGGTCCTTTTTTTTTATGCAGTCGCATCCTGTAGCAAAGGACATCCTTAACAAATCCTTGCCGTATTACGACGAACTTGCATATGTGTTCGATCGAGATAGGGCGACGGGTCACTTTGTTGAGACATTCACCAACGTCGGGTTTAACGAGCCTAATGGGTATGAGGGGTTTGACATGTCGGATGGGAACAAAGAGTTTTCATCCTTGTACAGCCAAGGGATTGACATTTCCCAAGATGATGTACGTGCATCATGA

mRNA sequence

ATGCGGTGGCCAGCATGCAGTGGGTTCTGCTGGAACGATGATGTAAAATACATAATTACGGAGAAGCAAGTCGTCGATAACTGGGTTAGGTCGCATCCTGTAGCAAAGGACATCCTTAACAAATCCTTGCCGTATTACGACGAACTTGCATATGTGTTCGATCGAGATAGGGCGACGGGTCACTTTGTTGAGACATTCACCAACGTCGGGTTTAACGAGCCTAATGGGTATGAGGGGTTTGACATGTCGGATGGGAACAAAGAGTTTTCATCCTTGTACAGCCAAGGGATTGACATTTCCCAAGATGATGTACGTGCATCATGA

Coding sequence (CDS)

ATGCGGTGGCCAGCATGCAGTGGGTTCTGCTGGAACGATGATGTAAAATACATAATTACGGAGAAGCAAGTCGTCGATAACTGGGTTAGGTCGCATCCTGTAGCAAAGGACATCCTTAACAAATCCTTGCCGTATTACGACGAACTTGCATATGTGTTCGATCGAGATAGGGCGACGGGTCACTTTGTTGAGACATTCACCAACGTCGGGTTTAACGAGCCTAATGGGTATGAGGGGTTTGACATGTCGGATGGGAACAAAGAGTTTTCATCCTTGTACAGCCAAGGGATTGACATTTCCCAAGATGATGTACGTGCATCATGA

Protein sequence

MRWPACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATGHFVETFTNVGFNEPNGYEGFDMSDGNKEFSSLYSQGIDISQDDVRAS
Homology
BLAST of MELO3C011581 vs. NCBI nr
Match: KAA0063924.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK11308.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 231.1 bits (588), Expect = 4.5e-57
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0

Query: 1   MRWPACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATG 60
           MRWPACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATG
Sbjct: 39  MRWPACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATG 98

Query: 61  HFVETFTNVGFNEPNGYEGFDMSDGNKEFSSLYSQGIDISQDDVRAS 108
           HFVETFTNVGFNEPNGYEGFDMSDGNKEFSSLYSQGIDISQDDVRAS
Sbjct: 99  HFVETFTNVGFNEPNGYEGFDMSDGNKEFSSLYSQGIDISQDDVRAS 145

BLAST of MELO3C011581 vs. NCBI nr
Match: KAA0033884.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK01268.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 169.5 bits (428), Expect = 1.6e-38
Identity = 80/108 (74.07%), Postives = 88/108 (81.48%), Query Frame = 0

Query: 1   MRWPACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATG 60
           MR PACSGF WND+ KYII EK+V DNW+RSHP AK +LNK   YYDELAYVF+ DRATG
Sbjct: 150 MREPACSGFKWNDEAKYIIVEKEVFDNWIRSHPAAKSLLNKLFSYYDELAYVFEWDRATG 209

Query: 61  HFVETFTNVGFNEPNGYEGFDMSDGNK-EFSSLYSQGIDISQDDVRAS 108
            FVETF ++G NEP GYEGFDMSDGN  EF  +YSQGIDISQDDVR S
Sbjct: 210 RFVETFADIGSNEPAGYEGFDMSDGNDIEFPFMYSQGIDISQDDVRTS 257

BLAST of MELO3C011581 vs. NCBI nr
Match: KAA0045003.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 169.1 bits (427), Expect = 2.1e-38
Identity = 76/107 (71.03%), Postives = 90/107 (84.11%), Query Frame = 0

Query: 1   MRWPACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATG 60
           MR PACSGF WNDD K II EK++ DNWVRSHP AK +LNK  PYY++L+YVFD DR TG
Sbjct: 1   MRGPACSGFGWNDDAKCIIAEKELFDNWVRSHPTAKGLLNKLFPYYEKLSYVFDCDRTTG 60

Query: 61  HFVETFTNVGFNEPNGYEGFDMSDGNKEFSSLYSQGIDISQDDVRAS 108
           HF ETFT++ FNEP+GYE FDM +GN+EF S+YSQGID+SQ+DVRAS
Sbjct: 61  HFAETFTDIRFNEPDGYEVFDMPNGNEEFPSVYSQGIDMSQEDVRAS 107

BLAST of MELO3C011581 vs. NCBI nr
Match: KAA0041550.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK19704.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 167.9 bits (424), Expect = 4.7e-38
Identity = 77/107 (71.96%), Postives = 89/107 (83.18%), Query Frame = 0

Query: 1   MRWPACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATG 60
           MR PACSGF WN++ K II EK++ DNWVRSHP AK +LNK   YYDEL YVFD DRAT 
Sbjct: 47  MRGPACSGFGWNNEEKCIIMEKELFDNWVRSHPAAKGLLNKPFSYYDELTYVFDSDRATD 106

Query: 61  HFVETFTNVGFNEPNGYEGFDMSDGNKEFSSLYSQGIDISQDDVRAS 108
            F ETF ++G NEP+GYEGFDM+DGN+EFSS+YSQGID+SQDDVRAS
Sbjct: 107 RFAETFVDMGSNEPDGYEGFDMADGNEEFSSVYSQGIDMSQDDVRAS 153

BLAST of MELO3C011581 vs. NCBI nr
Match: KAA0060332.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK22081.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 167.2 bits (422), Expect = 7.9e-38
Identity = 76/104 (73.08%), Postives = 86/104 (82.69%), Query Frame = 0

Query: 4   PACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATGHFV 63
           PACSGF WND+ K II EK++ DNWVRSHP AK +LNK  PYYDEL YVFDRDRA G F 
Sbjct: 95  PACSGFGWNDEEKCIILEKELFDNWVRSHPAAKTLLNKPFPYYDELTYVFDRDRAMGPFA 154

Query: 64  ETFTNVGFNEPNGYEGFDMSDGNKEFSSLYSQGIDISQDDVRAS 108
           +TF +VG NEP GYEGFDM+DGN+EF  +YSQGID+SQDDVRAS
Sbjct: 155 KTFADVGSNEPGGYEGFDMTDGNEEFPPVYSQGIDMSQDDVRAS 198

BLAST of MELO3C011581 vs. ExPASy TrEMBL
Match: A0A5A7V9L7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold1827G00170 PE=4 SV=1)

HSP 1 Score: 231.1 bits (588), Expect = 2.2e-57
Identity = 107/107 (100.00%), Postives = 107/107 (100.00%), Query Frame = 0

Query: 1   MRWPACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATG 60
           MRWPACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATG
Sbjct: 39  MRWPACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATG 98

Query: 61  HFVETFTNVGFNEPNGYEGFDMSDGNKEFSSLYSQGIDISQDDVRAS 108
           HFVETFTNVGFNEPNGYEGFDMSDGNKEFSSLYSQGIDISQDDVRAS
Sbjct: 99  HFVETFTNVGFNEPNGYEGFDMSDGNKEFSSLYSQGIDISQDDVRAS 145

BLAST of MELO3C011581 vs. ExPASy TrEMBL
Match: A0A5D3BQI7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold49G00550 PE=3 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 7.8e-39
Identity = 80/108 (74.07%), Postives = 88/108 (81.48%), Query Frame = 0

Query: 1   MRWPACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATG 60
           MR PACSGF WND+ KYII EK+V DNW+RSHP AK +LNK   YYDELAYVF+ DRATG
Sbjct: 150 MREPACSGFKWNDEAKYIIVEKEVFDNWIRSHPAAKSLLNKLFSYYDELAYVFEWDRATG 209

Query: 61  HFVETFTNVGFNEPNGYEGFDMSDGNK-EFSSLYSQGIDISQDDVRAS 108
            FVETF ++G NEP GYEGFDMSDGN  EF  +YSQGIDISQDDVR S
Sbjct: 210 RFVETFADIGSNEPAGYEGFDMSDGNDIEFPFMYSQGIDISQDDVRTS 257

BLAST of MELO3C011581 vs. ExPASy TrEMBL
Match: A0A5A7TNB5 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold74G003130 PE=4 SV=1)

HSP 1 Score: 169.1 bits (427), Expect = 1.0e-38
Identity = 76/107 (71.03%), Postives = 90/107 (84.11%), Query Frame = 0

Query: 1   MRWPACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATG 60
           MR PACSGF WNDD K II EK++ DNWVRSHP AK +LNK  PYY++L+YVFD DR TG
Sbjct: 1   MRGPACSGFGWNDDAKCIIAEKELFDNWVRSHPTAKGLLNKLFPYYEKLSYVFDCDRTTG 60

Query: 61  HFVETFTNVGFNEPNGYEGFDMSDGNKEFSSLYSQGIDISQDDVRAS 108
           HF ETFT++ FNEP+GYE FDM +GN+EF S+YSQGID+SQ+DVRAS
Sbjct: 61  HFAETFTDIRFNEPDGYEVFDMPNGNEEFPSVYSQGIDMSQEDVRAS 107

BLAST of MELO3C011581 vs. ExPASy TrEMBL
Match: A0A5D3D831 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold242G001060 PE=4 SV=1)

HSP 1 Score: 167.9 bits (424), Expect = 2.3e-38
Identity = 77/107 (71.96%), Postives = 89/107 (83.18%), Query Frame = 0

Query: 1   MRWPACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATG 60
           MR PACSGF WN++ K II EK++ DNWVRSHP AK +LNK   YYDEL YVFD DRAT 
Sbjct: 47  MRGPACSGFGWNNEEKCIIMEKELFDNWVRSHPAAKGLLNKPFSYYDELTYVFDSDRATD 106

Query: 61  HFVETFTNVGFNEPNGYEGFDMSDGNKEFSSLYSQGIDISQDDVRAS 108
            F ETF ++G NEP+GYEGFDM+DGN+EFSS+YSQGID+SQDDVRAS
Sbjct: 107 RFAETFVDMGSNEPDGYEGFDMADGNEEFSSVYSQGIDMSQDDVRAS 153

BLAST of MELO3C011581 vs. ExPASy TrEMBL
Match: A0A5A7UWV7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold318G00660 PE=4 SV=1)

HSP 1 Score: 167.2 bits (422), Expect = 3.8e-38
Identity = 76/104 (73.08%), Postives = 86/104 (82.69%), Query Frame = 0

Query: 4   PACSGFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVFDRDRATGHFV 63
           PACSGF WND+ K II EK++ DNWVRSHP AK +LNK  PYYDEL YVFDRDRA G F 
Sbjct: 95  PACSGFGWNDEEKCIILEKELFDNWVRSHPAAKTLLNKPFPYYDELTYVFDRDRAMGPFA 154

Query: 64  ETFTNVGFNEPNGYEGFDMSDGNKEFSSLYSQGIDISQDDVRAS 108
           +TF +VG NEP GYEGFDM+DGN+EF  +YSQGID+SQDDVRAS
Sbjct: 155 KTFADVGSNEPGGYEGFDMTDGNEEFPPVYSQGIDMSQDDVRAS 198

BLAST of MELO3C011581 vs. TAIR 10
Match: AT2G24960.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 1453 Blast hits to 509 proteins in 26 species: Archae - 0; Bacteria - 0; Metazoa - 1; Fungi - 39; Plants - 1363; Viruses - 0; Other Eukaryotes - 50 (source: NCBI BLink). )

HSP 1 Score: 40.8 bits (94), Expect = 8.0e-04
Identity = 18/56 (32.14%), Postives = 32/56 (57.14%), Query Frame = 0

Query: 8   GFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVF--DRDRATGH 62
           GF W++    I  +  V D++++ HP+A+    KSLP Y++L  +F    ++ T H
Sbjct: 245 GFSWDETRLMISADDAVWDSYIKDHPLARTYRMKSLPSYNDLDTIFACQAEQGTDH 300

BLAST of MELO3C011581 vs. TAIR 10
Match: AT2G24960.2 (unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biological_process unknown; LOCATED IN: cellular_component unknown; EXPRESSED IN: 21 plant structures; EXPRESSED DURING: 12 growth stages; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT4G02210.2); Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). )

HSP 1 Score: 40.8 bits (94), Expect = 8.0e-04
Identity = 18/56 (32.14%), Postives = 32/56 (57.14%), Query Frame = 0

Query: 8   GFCWNDDVKYIITEKQVVDNWVRSHPVAKDILNKSLPYYDELAYVF--DRDRATGH 62
           GF W++    I  +  V D++++ HP+A+    KSLP Y++L  +F    ++ T H
Sbjct: 245 GFSWDETRLMISADDAVWDSYIKDHPLARTYRMKSLPSYNDLDTIFACQAEQGTDH 300

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0063924.14.5e-57100.00retrotransposon protein [Cucumis melo var. makuwa] >TYK11308.1 retrotransposon p... [more]
KAA0033884.11.6e-3874.07retrotransposon protein [Cucumis melo var. makuwa] >TYK01268.1 retrotransposon p... [more]
KAA0045003.12.1e-3871.03retrotransposon protein [Cucumis melo var. makuwa][more]
KAA0041550.14.7e-3871.96retrotransposon protein [Cucumis melo var. makuwa] >TYK19704.1 retrotransposon p... [more]
KAA0060332.17.9e-3873.08retrotransposon protein [Cucumis melo var. makuwa] >TYK22081.1 retrotransposon p... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7V9L72.2e-57100.00Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5D3BQI77.8e-3974.07Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7TNB51.0e-3871.03Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold... [more]
A0A5D3D8312.3e-3871.96Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7UWV73.8e-3873.08Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
Match NameE-valueIdentityDescription
AT2G24960.18.0e-0432.14unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA... [more]
AT2G24960.28.0e-0432.14unknown protein; FUNCTIONS IN: molecular_function unknown; INVOLVED IN: biologic... [more]
InterPro
Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availablePANTHERPTHR46250MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEIN-RELATEDcoord: 6..69
NoneNo IPR availablePANTHERPTHR46250:SF3MYB/SANT-LIKE DNA-BINDING DOMAIN PROTEINcoord: 6..69

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C011581.1MELO3C011581.1mRNA