Sequences
The following sequences are available for this feature:
Gene sequence (with intron)
Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCCTATGCAGAGATCCTACTAATGGTTTGCAGTATTCTAGAATTGAAAAGGTTGACAGGATTTATGACTTTCTTACTGGTCTTAATCCTAAGTTTGATGTCGTTCGAGGGCATATACTAGGCAAGAGACCAATTCCCTCCTTGATGGAAGTCTGTTCTGAAATTTGCCTCGAGGAAGATCGCACAAGTGCTATGAATATCTCTACAACTCCTTCTATTGACTCAGTTGCTTTTACTGCAAGGTCCTCTACCAGTGGCAATGACAAGCACAATGGAAAACCAATTCCTATCCGTGAGCCTTGTAAACAACAATGGCATACCAAAGAACAGTGTTCGAAGTTACATGGTCGTCCCCTAGGAGATAAGAAACGCCCTTCCAACGACAAACAAAACACAGGGCGGACATATGTGAGTGAATTTGTTGGACCTTCTCAACCACCTGAGTCACAAGGGAACCAGATCGATCATGGTCCCACTACTCTAGGTGTCATTGTCCAATCAGGTATACCTCAATCCTCCAGTCTTATTTGTGTTAATGGGAAGAACCCCTGGATTCTGGATTCTGGCACCACAGATCATTTGACTAG
mRNA sequence
ATGAGCCTATGCAGAGATCCTACTAATGGTTTGCAGTATTCTAGAATTGAAAAGGTTGACAGGATTTATGACTTTCTTACTGGTCTTAATCCTAAGTTTGATGTCGTTCGAGGGCATATACTAGGCAAGAGACCAATTCCCTCCTTGATGGAAGTCTGTTCTGAAATTTGCCTCGAGGAAGATCGCACAAGTGCTATGAATATCTCTACAACTCCTTCTATTGACTCAGTTGCTTTTACTGCAAGGTCCTCTACCAGTGGCAATGACAAGCACAATGGAAAACCAATTCCTATCCGTGAGCCTTGTAAACAACAATGGCATACCAAAGAACAGTGTTCGAAGTTACATGGTCGTCCCCTAGGAGATAAGAAACGCCCTTCCAACGACAAACAAAACACAGGGCGGACATATGTGAGTGAATTTGTTGGACCTTCTCAACCACCTGAGTCACAAGGGAACCAGATCGATCATGGTCCCACTACTCTAGGTGTCATTGTCCAATCAGAACCCCTGGATTCTGGATTCTGGCACCACAGATCATTTGACTAG
Coding sequence (CDS)
ATGAGCCTATGCAGAGATCCTACTAATGGTTTGCAGTATTCTAGAATTGAAAAGGTTGACAGGATTTATGACTTTCTTACTGGTCTTAATCCTAAGTTTGATGTCGTTCGAGGGCATATACTAGGCAAGAGACCAATTCCCTCCTTGATGGAAGTCTGTTCTGAAATTTGCCTCGAGGAAGATCGCACAAGTGCTATGAATATCTCTACAACTCCTTCTATTGACTCAGTTGCTTTTACTGCAAGGTCCTCTACCAGTGGCAATGACAAGCACAATGGAAAACCAATTCCTATCCGTGAGCCTTGTAAACAACAATGGCATACCAAAGAACAGTGTTCGAAGTTACATGGTCGTCCCCTAGGAGATAAGAAACGCCCTTCCAACGACAAACAAAACACAGGGCGGACATATGTGAGTGAATTTGTTGGACCTTCTCAACCACCTGAGTCACAAGGGAACCAGATCGATCATGGTCCCACTACTCTAGGTGTCATTGTCCAATCAGAACCCCTGGATTCTGGATTCTGGCACCACAGATCATTTGACTAG
Protein sequence
MSLCRDPTNGLQYSRIEKVDRIYDFLTGLNPKFDVVRGHILGKRPIPSLMEVCSEICLEEDRTSAMNISTTPSIDSVAFTARSSTSGNDKHNGKPIPIREPCKQQWHTKEQCSKLHGRPLGDKKRPSNDKQNTGRTYVSEFVGPSQPPESQGNQIDHGPTTLGVIVQSEPLDSGFWHHRSFD
Homology
BLAST of MELO3C011382.jh1 vs. NCBI nr
Match:
KAA0064801.1 (Beta-galactosidase [Cucumis melo var. makuwa])
HSP 1 Score: 342 bits (878), Expect = 1.46e-115
Identity = 163/168 (97.02%), Postives = 163/168 (97.02%), Query Frame = 0
Query: 1 MSLCRDPTNGLQYSRIEKVDRIYDFLTGLNPKFDVVRGHILGKRPIPSLMEVCSEICLEE 60
M LCRDPTN LQYSRIEKVDRIYDFL GLNPKFDVVRGHILGKRPIPSLMEVCSEICLEE
Sbjct: 88 MGLCRDPTNSLQYSRIEKVDRIYDFLAGLNPKFDVVRGHILGKRPIPSLMEVCSEICLEE 147
Query: 61 DRTSAMNISTTPSIDSVAFTARSSTSGNDKHNGKPIPIREPCKQQWHTKEQCSKLHGRPL 120
DRTSAMNISTTPSIDS AFTARSSTSGNDKHNGKPIPIREPCKQQWHTKEQCSKLHGRPL
Sbjct: 148 DRTSAMNISTTPSIDSAAFTARSSTSGNDKHNGKPIPIREPCKQQWHTKEQCSKLHGRPL 207
Query: 121 GDKKRPSNDKQNTGRTYVSEFVGPSQPPESQGNQIDHGPTTLGVIVQS 168
GDKKRPSNDKQNTGR YVSEFVGPSQPPESQGNQIDHGPTTLGVIVQS
Sbjct: 208 GDKKRPSNDKQNTGRAYVSEFVGPSQPPESQGNQIDHGPTTLGVIVQS 255
BLAST of MELO3C011382.jh1 vs. NCBI nr
Match:
TYK06446.1 (Beta-galactosidase [Cucumis melo var. makuwa])
HSP 1 Score: 215 bits (547), Expect = 1.09e-65
Identity = 110/167 (65.87%), Postives = 125/167 (74.85%), Query Frame = 0
Query: 11 LQYSRIEKVDRIYDFLTGLNPKFDVVRGHILGKRPIPSLMEVCSEICLEEDRTSAMNIST 70
LQYSR+E++DRIY FL GLNPKFD+VRGHIL +RPIPSLMEV EI LEE+ TSAM+I
Sbjct: 134 LQYSRMEEIDRIYGFLVGLNPKFDIVRGHILHQRPIPSLMEVYYEIRLEENCTSAMSILA 193
Query: 71 TPSIDSVAFTARSSTSGNDKHNGKPIPIREPCKQQWHTKEQCSKLHGRPLGDKKRPSNDK 130
TP+ID AF+ARSS SG+DKH+ KPIP+ E K+QWHTKEQ KLHGR G KKR NDK
Sbjct: 194 TPNIDFAAFSARSSNSGSDKHDRKPIPVCENSKKQWHTKEQYWKLHGRSPGGKKRDPNDK 253
Query: 131 QNTGRTYVSEFVGPSQPPESQGNQIDHGPTTLGVIVQSEPLDSGFWH 177
QNTG YVSE GPSQP + GNQ P TLG IVQS+ L H
Sbjct: 254 QNTGWAYVSESSGPSQPLDPHGNQTYFSPATLGAIVQSDHLTGSSEH 300
BLAST of MELO3C011382.jh1 vs. NCBI nr
Match:
KAA0068062.1 (Beta-galactosidase [Cucumis melo var. makuwa])
HSP 1 Score: 213 bits (543), Expect = 1.84e-64
Identity = 109/167 (65.27%), Postives = 125/167 (74.85%), Query Frame = 0
Query: 11 LQYSRIEKVDRIYDFLTGLNPKFDVVRGHILGKRPIPSLMEVCSEICLEEDRTSAMNIST 70
LQYSR+E++DRIY FL GLNPKFD+VRGHIL +RPIPSLMEV EI LEE+ TSA++I
Sbjct: 134 LQYSRMEEIDRIYGFLVGLNPKFDIVRGHILHQRPIPSLMEVYYEIRLEENCTSAVSILA 193
Query: 71 TPSIDSVAFTARSSTSGNDKHNGKPIPIREPCKQQWHTKEQCSKLHGRPLGDKKRPSNDK 130
TP+ID AF+ARSS SG+DKH+ KPIP+ E K+QWHTKEQ KLHGR G KKR NDK
Sbjct: 194 TPNIDFAAFSARSSNSGSDKHDRKPIPVCENSKKQWHTKEQYWKLHGRSPGGKKRDPNDK 253
Query: 131 QNTGRTYVSEFVGPSQPPESQGNQIDHGPTTLGVIVQSEPLDSGFWH 177
QNTG YVSE GPSQP + GNQ P TLG IVQS+ L H
Sbjct: 254 QNTGWAYVSESSGPSQPLDPHGNQTYFSPATLGAIVQSDHLTGSSEH 300
BLAST of MELO3C011382.jh1 vs. NCBI nr
Match:
TYK03453.1 (Beta-galactosidase [Cucumis melo var. makuwa])
HSP 1 Score: 210 bits (535), Expect = 3.05e-59
Identity = 102/173 (58.96%), Postives = 124/173 (71.68%), Query Frame = 0
Query: 1 MSLCRD-----PTNGLQYSRIEKVDRIYDFLTGLNPKFDVVRGHILGKRPIPSLMEVCSE 60
M LCR+ P + QY+++E+ DR+YDFL GLNPKFD V G ILG+RP+PSLMEVC E
Sbjct: 206 MDLCRETVWDTPNDSTQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFE 265
Query: 61 ICLEEDRTSAMNISTTPSIDSVAFTARSSTSGNDKHNGKPIPIREPCKQQWHTKEQCSKL 120
+CLEEDRT+AM + TTP+IDS AF+ARSS DK+NGK IP+ E CK+QWHTK+QC KL
Sbjct: 266 VCLEEDRTNAMGVLTTPTIDSAAFSARSSNHDIDKNNGKSIPVCEHCKKQWHTKDQCWKL 325
Query: 121 HGRPLGDKKRPSNDKQNTGRTYVSEFVGPSQPPESQGNQIDHGPTTLGVIVQS 168
HGRPLG KKR SN+KQN+GR Y+SE S + TLG I QS
Sbjct: 326 HGRPLGGKKRSSNEKQNSGRAYISETTPASTSQSTDPTASQTKTPTLGAIAQS 378
BLAST of MELO3C011382.jh1 vs. NCBI nr
Match:
KAA0057570.1 (uncharacterized protein E6C27_scaffold497G00420 [Cucumis melo var. makuwa] >TYK18290.1 uncharacterized protein E5676_scaffold411G002330 [Cucumis melo var. makuwa])
HSP 1 Score: 199 bits (506), Expect = 1.37e-58
Identity = 99/173 (57.23%), Postives = 125/173 (72.25%), Query Frame = 0
Query: 1 MSLCRD-----PTNGLQYSRIEKVDRIYDFLTGLNPKFDVVRGHILGKRPIPSLMEVCSE 60
M LCR+ P +G QY+++E+ DR+YDFL LNPKFD V G ILG+RP+ SLME+C E
Sbjct: 264 MDLCRETVWDIPNDGTQYAKLEEADRVYDFLVRLNPKFDNVCGRILGQRPLHSLMEICFE 323
Query: 61 ICLEEDRTSAMNISTTPSIDSVAFTARSSTSGNDKHNGKPIPIREPCKQQWHTKEQCSKL 120
+CLEEDRT+AM++ TTP+IDS AF+ARSS +DK+NGK IP+ E CK+QWHTK+QC KL
Sbjct: 324 VCLEEDRTNAMSVLTTPTIDSAAFSARSSDHDSDKNNGKSIPVCEYCKKQWHTKDQCWKL 383
Query: 121 HGRPLGDKKRPSNDKQNTGRTYVSEFV--GPSQPPESQGNQIDHGPTTLGVIV 166
HGRPL KK+ SN+KQN+GR Y+SE SQ + NQ TLG I
Sbjct: 384 HGRPLEGKKQSSNEKQNSGRAYISEITPTSTSQSTDPTANQTK--TPTLGAIA 434
BLAST of MELO3C011382.jh1 vs. ExPASy TrEMBL
Match:
A0A5A7VGG4 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001090 PE=4 SV=1)
HSP 1 Score: 342 bits (878), Expect = 7.07e-116
Identity = 163/168 (97.02%), Postives = 163/168 (97.02%), Query Frame = 0
Query: 1 MSLCRDPTNGLQYSRIEKVDRIYDFLTGLNPKFDVVRGHILGKRPIPSLMEVCSEICLEE 60
M LCRDPTN LQYSRIEKVDRIYDFL GLNPKFDVVRGHILGKRPIPSLMEVCSEICLEE
Sbjct: 88 MGLCRDPTNSLQYSRIEKVDRIYDFLAGLNPKFDVVRGHILGKRPIPSLMEVCSEICLEE 147
Query: 61 DRTSAMNISTTPSIDSVAFTARSSTSGNDKHNGKPIPIREPCKQQWHTKEQCSKLHGRPL 120
DRTSAMNISTTPSIDS AFTARSSTSGNDKHNGKPIPIREPCKQQWHTKEQCSKLHGRPL
Sbjct: 148 DRTSAMNISTTPSIDSAAFTARSSTSGNDKHNGKPIPIREPCKQQWHTKEQCSKLHGRPL 207
Query: 121 GDKKRPSNDKQNTGRTYVSEFVGPSQPPESQGNQIDHGPTTLGVIVQS 168
GDKKRPSNDKQNTGR YVSEFVGPSQPPESQGNQIDHGPTTLGVIVQS
Sbjct: 208 GDKKRPSNDKQNTGRAYVSEFVGPSQPPESQGNQIDHGPTTLGVIVQS 255
BLAST of MELO3C011382.jh1 vs. ExPASy TrEMBL
Match:
A0A5D3C7Y3 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G001530 PE=4 SV=1)
HSP 1 Score: 215 bits (547), Expect = 5.30e-66
Identity = 110/167 (65.87%), Postives = 125/167 (74.85%), Query Frame = 0
Query: 11 LQYSRIEKVDRIYDFLTGLNPKFDVVRGHILGKRPIPSLMEVCSEICLEEDRTSAMNIST 70
LQYSR+E++DRIY FL GLNPKFD+VRGHIL +RPIPSLMEV EI LEE+ TSAM+I
Sbjct: 134 LQYSRMEEIDRIYGFLVGLNPKFDIVRGHILHQRPIPSLMEVYYEIRLEENCTSAMSILA 193
Query: 71 TPSIDSVAFTARSSTSGNDKHNGKPIPIREPCKQQWHTKEQCSKLHGRPLGDKKRPSNDK 130
TP+ID AF+ARSS SG+DKH+ KPIP+ E K+QWHTKEQ KLHGR G KKR NDK
Sbjct: 194 TPNIDFAAFSARSSNSGSDKHDRKPIPVCENSKKQWHTKEQYWKLHGRSPGGKKRDPNDK 253
Query: 131 QNTGRTYVSEFVGPSQPPESQGNQIDHGPTTLGVIVQSEPLDSGFWH 177
QNTG YVSE GPSQP + GNQ P TLG IVQS+ L H
Sbjct: 254 QNTGWAYVSESSGPSQPLDPHGNQTYFSPATLGAIVQSDHLTGSSEH 300
BLAST of MELO3C011382.jh1 vs. ExPASy TrEMBL
Match:
A0A5A7VI94 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G00100 PE=4 SV=1)
HSP 1 Score: 213 bits (543), Expect = 8.93e-65
Identity = 109/167 (65.27%), Postives = 125/167 (74.85%), Query Frame = 0
Query: 11 LQYSRIEKVDRIYDFLTGLNPKFDVVRGHILGKRPIPSLMEVCSEICLEEDRTSAMNIST 70
LQYSR+E++DRIY FL GLNPKFD+VRGHIL +RPIPSLMEV EI LEE+ TSA++I
Sbjct: 134 LQYSRMEEIDRIYGFLVGLNPKFDIVRGHILHQRPIPSLMEVYYEIRLEENCTSAVSILA 193
Query: 71 TPSIDSVAFTARSSTSGNDKHNGKPIPIREPCKQQWHTKEQCSKLHGRPLGDKKRPSNDK 130
TP+ID AF+ARSS SG+DKH+ KPIP+ E K+QWHTKEQ KLHGR G KKR NDK
Sbjct: 194 TPNIDFAAFSARSSNSGSDKHDRKPIPVCENSKKQWHTKEQYWKLHGRSPGGKKRDPNDK 253
Query: 131 QNTGRTYVSEFVGPSQPPESQGNQIDHGPTTLGVIVQSEPLDSGFWH 177
QNTG YVSE GPSQP + GNQ P TLG IVQS+ L H
Sbjct: 254 QNTGWAYVSESSGPSQPLDPHGNQTYFSPATLGAIVQSDHLTGSSEH 300
BLAST of MELO3C011382.jh1 vs. ExPASy TrEMBL
Match:
A0A5D3BUT8 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G00580 PE=4 SV=1)
HSP 1 Score: 210 bits (535), Expect = 1.48e-59
Identity = 102/173 (58.96%), Postives = 124/173 (71.68%), Query Frame = 0
Query: 1 MSLCRD-----PTNGLQYSRIEKVDRIYDFLTGLNPKFDVVRGHILGKRPIPSLMEVCSE 60
M LCR+ P + QY+++E+ DR+YDFL GLNPKFD V G ILG+RP+PSLMEVC E
Sbjct: 206 MDLCRETVWDTPNDSTQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFE 265
Query: 61 ICLEEDRTSAMNISTTPSIDSVAFTARSSTSGNDKHNGKPIPIREPCKQQWHTKEQCSKL 120
+CLEEDRT+AM + TTP+IDS AF+ARSS DK+NGK IP+ E CK+QWHTK+QC KL
Sbjct: 266 VCLEEDRTNAMGVLTTPTIDSAAFSARSSNHDIDKNNGKSIPVCEHCKKQWHTKDQCWKL 325
Query: 121 HGRPLGDKKRPSNDKQNTGRTYVSEFVGPSQPPESQGNQIDHGPTTLGVIVQS 168
HGRPLG KKR SN+KQN+GR Y+SE S + TLG I QS
Sbjct: 326 HGRPLGGKKRSSNEKQNSGRAYISETTPASTSQSTDPTASQTKTPTLGAIAQS 378
BLAST of MELO3C011382.jh1 vs. ExPASy TrEMBL
Match:
A0A5D3D424 (Retrotran_gag_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G002330 PE=4 SV=1)
HSP 1 Score: 199 bits (506), Expect = 6.64e-59
Identity = 99/173 (57.23%), Postives = 125/173 (72.25%), Query Frame = 0
Query: 1 MSLCRD-----PTNGLQYSRIEKVDRIYDFLTGLNPKFDVVRGHILGKRPIPSLMEVCSE 60
M LCR+ P +G QY+++E+ DR+YDFL LNPKFD V G ILG+RP+ SLME+C E
Sbjct: 264 MDLCRETVWDIPNDGTQYAKLEEADRVYDFLVRLNPKFDNVCGRILGQRPLHSLMEICFE 323
Query: 61 ICLEEDRTSAMNISTTPSIDSVAFTARSSTSGNDKHNGKPIPIREPCKQQWHTKEQCSKL 120
+CLEEDRT+AM++ TTP+IDS AF+ARSS +DK+NGK IP+ E CK+QWHTK+QC KL
Sbjct: 324 VCLEEDRTNAMSVLTTPTIDSAAFSARSSDHDSDKNNGKSIPVCEYCKKQWHTKDQCWKL 383
Query: 121 HGRPLGDKKRPSNDKQNTGRTYVSEFV--GPSQPPESQGNQIDHGPTTLGVIV 166
HGRPL KK+ SN+KQN+GR Y+SE SQ + NQ TLG I
Sbjct: 384 HGRPLEGKKQSSNEKQNSGRAYISEITPTSTSQSTDPTANQTK--TPTLGAIA 434
The following BLAST results are available for this feature:
Match Name | E-value | Identity | Description | |
KAA0064801.1 | 1.46e-115 | 97.02 | Beta-galactosidase [Cucumis melo var. makuwa] | [more] |
TYK06446.1 | 1.09e-65 | 65.87 | Beta-galactosidase [Cucumis melo var. makuwa] | [more] |
KAA0068062.1 | 1.84e-64 | 65.27 | Beta-galactosidase [Cucumis melo var. makuwa] | [more] |
TYK03453.1 | 3.05e-59 | 58.96 | Beta-galactosidase [Cucumis melo var. makuwa] | [more] |
KAA0057570.1 | 1.37e-58 | 57.23 | uncharacterized protein E6C27_scaffold497G00420 [Cucumis melo var. makuwa] >TYK1... | [more] |
Match Name | E-value | Identity | Description | |
Match Name | E-value | Identity | Description | |
A0A5A7VGG4 | 7.07e-116 | 97.02 | Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G00... | [more] |
A0A5D3C7Y3 | 5.30e-66 | 65.87 | Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G0... | [more] |
A0A5A7VI94 | 8.93e-65 | 65.27 | Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G0... | [more] |
A0A5D3BUT8 | 1.48e-59 | 58.96 | Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G0... | [more] |
A0A5D3D424 | 6.64e-59 | 57.23 | Retrotran_gag_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695... | [more] |
Match Name | E-value | Identity | Description | |