MELO3C011382.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C011382.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionBeta-galactosidase
Locationchr03: 24909728 .. 24910317 (+)
RNA-Seq ExpressionMELO3C011382.jh1
SyntenyMELO3C011382.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGAGCCTATGCAGAGATCCTACTAATGGTTTGCAGTATTCTAGAATTGAAAAGGTTGACAGGATTTATGACTTTCTTACTGGTCTTAATCCTAAGTTTGATGTCGTTCGAGGGCATATACTAGGCAAGAGACCAATTCCCTCCTTGATGGAAGTCTGTTCTGAAATTTGCCTCGAGGAAGATCGCACAAGTGCTATGAATATCTCTACAACTCCTTCTATTGACTCAGTTGCTTTTACTGCAAGGTCCTCTACCAGTGGCAATGACAAGCACAATGGAAAACCAATTCCTATCCGTGAGCCTTGTAAACAACAATGGCATACCAAAGAACAGTGTTCGAAGTTACATGGTCGTCCCCTAGGAGATAAGAAACGCCCTTCCAACGACAAACAAAACACAGGGCGGACATATGTGAGTGAATTTGTTGGACCTTCTCAACCACCTGAGTCACAAGGGAACCAGATCGATCATGGTCCCACTACTCTAGGTGTCATTGTCCAATCAGGTATACCTCAATCCTCCAGTCTTATTTGTGTTAATGGGAAGAACCCCTGGATTCTGGATTCTGGCACCACAGATCATTTGACTAG

mRNA sequence

ATGAGCCTATGCAGAGATCCTACTAATGGTTTGCAGTATTCTAGAATTGAAAAGGTTGACAGGATTTATGACTTTCTTACTGGTCTTAATCCTAAGTTTGATGTCGTTCGAGGGCATATACTAGGCAAGAGACCAATTCCCTCCTTGATGGAAGTCTGTTCTGAAATTTGCCTCGAGGAAGATCGCACAAGTGCTATGAATATCTCTACAACTCCTTCTATTGACTCAGTTGCTTTTACTGCAAGGTCCTCTACCAGTGGCAATGACAAGCACAATGGAAAACCAATTCCTATCCGTGAGCCTTGTAAACAACAATGGCATACCAAAGAACAGTGTTCGAAGTTACATGGTCGTCCCCTAGGAGATAAGAAACGCCCTTCCAACGACAAACAAAACACAGGGCGGACATATGTGAGTGAATTTGTTGGACCTTCTCAACCACCTGAGTCACAAGGGAACCAGATCGATCATGGTCCCACTACTCTAGGTGTCATTGTCCAATCAGAACCCCTGGATTCTGGATTCTGGCACCACAGATCATTTGACTAG

Coding sequence (CDS)

ATGAGCCTATGCAGAGATCCTACTAATGGTTTGCAGTATTCTAGAATTGAAAAGGTTGACAGGATTTATGACTTTCTTACTGGTCTTAATCCTAAGTTTGATGTCGTTCGAGGGCATATACTAGGCAAGAGACCAATTCCCTCCTTGATGGAAGTCTGTTCTGAAATTTGCCTCGAGGAAGATCGCACAAGTGCTATGAATATCTCTACAACTCCTTCTATTGACTCAGTTGCTTTTACTGCAAGGTCCTCTACCAGTGGCAATGACAAGCACAATGGAAAACCAATTCCTATCCGTGAGCCTTGTAAACAACAATGGCATACCAAAGAACAGTGTTCGAAGTTACATGGTCGTCCCCTAGGAGATAAGAAACGCCCTTCCAACGACAAACAAAACACAGGGCGGACATATGTGAGTGAATTTGTTGGACCTTCTCAACCACCTGAGTCACAAGGGAACCAGATCGATCATGGTCCCACTACTCTAGGTGTCATTGTCCAATCAGAACCCCTGGATTCTGGATTCTGGCACCACAGATCATTTGACTAG

Protein sequence

MSLCRDPTNGLQYSRIEKVDRIYDFLTGLNPKFDVVRGHILGKRPIPSLMEVCSEICLEEDRTSAMNISTTPSIDSVAFTARSSTSGNDKHNGKPIPIREPCKQQWHTKEQCSKLHGRPLGDKKRPSNDKQNTGRTYVSEFVGPSQPPESQGNQIDHGPTTLGVIVQSEPLDSGFWHHRSFD
Homology
BLAST of MELO3C011382.jh1 vs. NCBI nr
Match: KAA0064801.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 342 bits (878), Expect = 1.46e-115
Identity = 163/168 (97.02%), Postives = 163/168 (97.02%), Query Frame = 0

Query: 1   MSLCRDPTNGLQYSRIEKVDRIYDFLTGLNPKFDVVRGHILGKRPIPSLMEVCSEICLEE 60
           M LCRDPTN LQYSRIEKVDRIYDFL GLNPKFDVVRGHILGKRPIPSLMEVCSEICLEE
Sbjct: 88  MGLCRDPTNSLQYSRIEKVDRIYDFLAGLNPKFDVVRGHILGKRPIPSLMEVCSEICLEE 147

Query: 61  DRTSAMNISTTPSIDSVAFTARSSTSGNDKHNGKPIPIREPCKQQWHTKEQCSKLHGRPL 120
           DRTSAMNISTTPSIDS AFTARSSTSGNDKHNGKPIPIREPCKQQWHTKEQCSKLHGRPL
Sbjct: 148 DRTSAMNISTTPSIDSAAFTARSSTSGNDKHNGKPIPIREPCKQQWHTKEQCSKLHGRPL 207

Query: 121 GDKKRPSNDKQNTGRTYVSEFVGPSQPPESQGNQIDHGPTTLGVIVQS 168
           GDKKRPSNDKQNTGR YVSEFVGPSQPPESQGNQIDHGPTTLGVIVQS
Sbjct: 208 GDKKRPSNDKQNTGRAYVSEFVGPSQPPESQGNQIDHGPTTLGVIVQS 255

BLAST of MELO3C011382.jh1 vs. NCBI nr
Match: TYK06446.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 215 bits (547), Expect = 1.09e-65
Identity = 110/167 (65.87%), Postives = 125/167 (74.85%), Query Frame = 0

Query: 11  LQYSRIEKVDRIYDFLTGLNPKFDVVRGHILGKRPIPSLMEVCSEICLEEDRTSAMNIST 70
           LQYSR+E++DRIY FL GLNPKFD+VRGHIL +RPIPSLMEV  EI LEE+ TSAM+I  
Sbjct: 134 LQYSRMEEIDRIYGFLVGLNPKFDIVRGHILHQRPIPSLMEVYYEIRLEENCTSAMSILA 193

Query: 71  TPSIDSVAFTARSSTSGNDKHNGKPIPIREPCKQQWHTKEQCSKLHGRPLGDKKRPSNDK 130
           TP+ID  AF+ARSS SG+DKH+ KPIP+ E  K+QWHTKEQ  KLHGR  G KKR  NDK
Sbjct: 194 TPNIDFAAFSARSSNSGSDKHDRKPIPVCENSKKQWHTKEQYWKLHGRSPGGKKRDPNDK 253

Query: 131 QNTGRTYVSEFVGPSQPPESQGNQIDHGPTTLGVIVQSEPLDSGFWH 177
           QNTG  YVSE  GPSQP +  GNQ    P TLG IVQS+ L     H
Sbjct: 254 QNTGWAYVSESSGPSQPLDPHGNQTYFSPATLGAIVQSDHLTGSSEH 300

BLAST of MELO3C011382.jh1 vs. NCBI nr
Match: KAA0068062.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 213 bits (543), Expect = 1.84e-64
Identity = 109/167 (65.27%), Postives = 125/167 (74.85%), Query Frame = 0

Query: 11  LQYSRIEKVDRIYDFLTGLNPKFDVVRGHILGKRPIPSLMEVCSEICLEEDRTSAMNIST 70
           LQYSR+E++DRIY FL GLNPKFD+VRGHIL +RPIPSLMEV  EI LEE+ TSA++I  
Sbjct: 134 LQYSRMEEIDRIYGFLVGLNPKFDIVRGHILHQRPIPSLMEVYYEIRLEENCTSAVSILA 193

Query: 71  TPSIDSVAFTARSSTSGNDKHNGKPIPIREPCKQQWHTKEQCSKLHGRPLGDKKRPSNDK 130
           TP+ID  AF+ARSS SG+DKH+ KPIP+ E  K+QWHTKEQ  KLHGR  G KKR  NDK
Sbjct: 194 TPNIDFAAFSARSSNSGSDKHDRKPIPVCENSKKQWHTKEQYWKLHGRSPGGKKRDPNDK 253

Query: 131 QNTGRTYVSEFVGPSQPPESQGNQIDHGPTTLGVIVQSEPLDSGFWH 177
           QNTG  YVSE  GPSQP +  GNQ    P TLG IVQS+ L     H
Sbjct: 254 QNTGWAYVSESSGPSQPLDPHGNQTYFSPATLGAIVQSDHLTGSSEH 300

BLAST of MELO3C011382.jh1 vs. NCBI nr
Match: TYK03453.1 (Beta-galactosidase [Cucumis melo var. makuwa])

HSP 1 Score: 210 bits (535), Expect = 3.05e-59
Identity = 102/173 (58.96%), Postives = 124/173 (71.68%), Query Frame = 0

Query: 1   MSLCRD-----PTNGLQYSRIEKVDRIYDFLTGLNPKFDVVRGHILGKRPIPSLMEVCSE 60
           M LCR+     P +  QY+++E+ DR+YDFL GLNPKFD V G ILG+RP+PSLMEVC E
Sbjct: 206 MDLCRETVWDTPNDSTQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFE 265

Query: 61  ICLEEDRTSAMNISTTPSIDSVAFTARSSTSGNDKHNGKPIPIREPCKQQWHTKEQCSKL 120
           +CLEEDRT+AM + TTP+IDS AF+ARSS    DK+NGK IP+ E CK+QWHTK+QC KL
Sbjct: 266 VCLEEDRTNAMGVLTTPTIDSAAFSARSSNHDIDKNNGKSIPVCEHCKKQWHTKDQCWKL 325

Query: 121 HGRPLGDKKRPSNDKQNTGRTYVSEFVGPSQPPESQGNQIDHGPTTLGVIVQS 168
           HGRPLG KKR SN+KQN+GR Y+SE    S    +          TLG I QS
Sbjct: 326 HGRPLGGKKRSSNEKQNSGRAYISETTPASTSQSTDPTASQTKTPTLGAIAQS 378

BLAST of MELO3C011382.jh1 vs. NCBI nr
Match: KAA0057570.1 (uncharacterized protein E6C27_scaffold497G00420 [Cucumis melo var. makuwa] >TYK18290.1 uncharacterized protein E5676_scaffold411G002330 [Cucumis melo var. makuwa])

HSP 1 Score: 199 bits (506), Expect = 1.37e-58
Identity = 99/173 (57.23%), Postives = 125/173 (72.25%), Query Frame = 0

Query: 1   MSLCRD-----PTNGLQYSRIEKVDRIYDFLTGLNPKFDVVRGHILGKRPIPSLMEVCSE 60
           M LCR+     P +G QY+++E+ DR+YDFL  LNPKFD V G ILG+RP+ SLME+C E
Sbjct: 264 MDLCRETVWDIPNDGTQYAKLEEADRVYDFLVRLNPKFDNVCGRILGQRPLHSLMEICFE 323

Query: 61  ICLEEDRTSAMNISTTPSIDSVAFTARSSTSGNDKHNGKPIPIREPCKQQWHTKEQCSKL 120
           +CLEEDRT+AM++ TTP+IDS AF+ARSS   +DK+NGK IP+ E CK+QWHTK+QC KL
Sbjct: 324 VCLEEDRTNAMSVLTTPTIDSAAFSARSSDHDSDKNNGKSIPVCEYCKKQWHTKDQCWKL 383

Query: 121 HGRPLGDKKRPSNDKQNTGRTYVSEFV--GPSQPPESQGNQIDHGPTTLGVIV 166
           HGRPL  KK+ SN+KQN+GR Y+SE      SQ  +   NQ      TLG I 
Sbjct: 384 HGRPLEGKKQSSNEKQNSGRAYISEITPTSTSQSTDPTANQTK--TPTLGAIA 434

BLAST of MELO3C011382.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VGG4 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G001090 PE=4 SV=1)

HSP 1 Score: 342 bits (878), Expect = 7.07e-116
Identity = 163/168 (97.02%), Postives = 163/168 (97.02%), Query Frame = 0

Query: 1   MSLCRDPTNGLQYSRIEKVDRIYDFLTGLNPKFDVVRGHILGKRPIPSLMEVCSEICLEE 60
           M LCRDPTN LQYSRIEKVDRIYDFL GLNPKFDVVRGHILGKRPIPSLMEVCSEICLEE
Sbjct: 88  MGLCRDPTNSLQYSRIEKVDRIYDFLAGLNPKFDVVRGHILGKRPIPSLMEVCSEICLEE 147

Query: 61  DRTSAMNISTTPSIDSVAFTARSSTSGNDKHNGKPIPIREPCKQQWHTKEQCSKLHGRPL 120
           DRTSAMNISTTPSIDS AFTARSSTSGNDKHNGKPIPIREPCKQQWHTKEQCSKLHGRPL
Sbjct: 148 DRTSAMNISTTPSIDSAAFTARSSTSGNDKHNGKPIPIREPCKQQWHTKEQCSKLHGRPL 207

Query: 121 GDKKRPSNDKQNTGRTYVSEFVGPSQPPESQGNQIDHGPTTLGVIVQS 168
           GDKKRPSNDKQNTGR YVSEFVGPSQPPESQGNQIDHGPTTLGVIVQS
Sbjct: 208 GDKKRPSNDKQNTGRAYVSEFVGPSQPPESQGNQIDHGPTTLGVIVQS 255

BLAST of MELO3C011382.jh1 vs. ExPASy TrEMBL
Match: A0A5D3C7Y3 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G001530 PE=4 SV=1)

HSP 1 Score: 215 bits (547), Expect = 5.30e-66
Identity = 110/167 (65.87%), Postives = 125/167 (74.85%), Query Frame = 0

Query: 11  LQYSRIEKVDRIYDFLTGLNPKFDVVRGHILGKRPIPSLMEVCSEICLEEDRTSAMNIST 70
           LQYSR+E++DRIY FL GLNPKFD+VRGHIL +RPIPSLMEV  EI LEE+ TSAM+I  
Sbjct: 134 LQYSRMEEIDRIYGFLVGLNPKFDIVRGHILHQRPIPSLMEVYYEIRLEENCTSAMSILA 193

Query: 71  TPSIDSVAFTARSSTSGNDKHNGKPIPIREPCKQQWHTKEQCSKLHGRPLGDKKRPSNDK 130
           TP+ID  AF+ARSS SG+DKH+ KPIP+ E  K+QWHTKEQ  KLHGR  G KKR  NDK
Sbjct: 194 TPNIDFAAFSARSSNSGSDKHDRKPIPVCENSKKQWHTKEQYWKLHGRSPGGKKRDPNDK 253

Query: 131 QNTGRTYVSEFVGPSQPPESQGNQIDHGPTTLGVIVQSEPLDSGFWH 177
           QNTG  YVSE  GPSQP +  GNQ    P TLG IVQS+ L     H
Sbjct: 254 QNTGWAYVSESSGPSQPLDPHGNQTYFSPATLGAIVQSDHLTGSSEH 300

BLAST of MELO3C011382.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VI94 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G00100 PE=4 SV=1)

HSP 1 Score: 213 bits (543), Expect = 8.93e-65
Identity = 109/167 (65.27%), Postives = 125/167 (74.85%), Query Frame = 0

Query: 11  LQYSRIEKVDRIYDFLTGLNPKFDVVRGHILGKRPIPSLMEVCSEICLEEDRTSAMNIST 70
           LQYSR+E++DRIY FL GLNPKFD+VRGHIL +RPIPSLMEV  EI LEE+ TSA++I  
Sbjct: 134 LQYSRMEEIDRIYGFLVGLNPKFDIVRGHILHQRPIPSLMEVYYEIRLEENCTSAVSILA 193

Query: 71  TPSIDSVAFTARSSTSGNDKHNGKPIPIREPCKQQWHTKEQCSKLHGRPLGDKKRPSNDK 130
           TP+ID  AF+ARSS SG+DKH+ KPIP+ E  K+QWHTKEQ  KLHGR  G KKR  NDK
Sbjct: 194 TPNIDFAAFSARSSNSGSDKHDRKPIPVCENSKKQWHTKEQYWKLHGRSPGGKKRDPNDK 253

Query: 131 QNTGRTYVSEFVGPSQPPESQGNQIDHGPTTLGVIVQSEPLDSGFWH 177
           QNTG  YVSE  GPSQP +  GNQ    P TLG IVQS+ L     H
Sbjct: 254 QNTGWAYVSESSGPSQPLDPHGNQTYFSPATLGAIVQSDHLTGSSEH 300

BLAST of MELO3C011382.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BUT8 (Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G00580 PE=4 SV=1)

HSP 1 Score: 210 bits (535), Expect = 1.48e-59
Identity = 102/173 (58.96%), Postives = 124/173 (71.68%), Query Frame = 0

Query: 1   MSLCRD-----PTNGLQYSRIEKVDRIYDFLTGLNPKFDVVRGHILGKRPIPSLMEVCSE 60
           M LCR+     P +  QY+++E+ DR+YDFL GLNPKFD V G ILG+RP+PSLMEVC E
Sbjct: 206 MDLCRETVWDTPNDSTQYAKLEEADRVYDFLAGLNPKFDNVCGRILGQRPLPSLMEVCFE 265

Query: 61  ICLEEDRTSAMNISTTPSIDSVAFTARSSTSGNDKHNGKPIPIREPCKQQWHTKEQCSKL 120
           +CLEEDRT+AM + TTP+IDS AF+ARSS    DK+NGK IP+ E CK+QWHTK+QC KL
Sbjct: 266 VCLEEDRTNAMGVLTTPTIDSAAFSARSSNHDIDKNNGKSIPVCEHCKKQWHTKDQCWKL 325

Query: 121 HGRPLGDKKRPSNDKQNTGRTYVSEFVGPSQPPESQGNQIDHGPTTLGVIVQS 168
           HGRPLG KKR SN+KQN+GR Y+SE    S    +          TLG I QS
Sbjct: 326 HGRPLGGKKRSSNEKQNSGRAYISETTPASTSQSTDPTASQTKTPTLGAIAQS 378

BLAST of MELO3C011382.jh1 vs. ExPASy TrEMBL
Match: A0A5D3D424 (Retrotran_gag_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold411G002330 PE=4 SV=1)

HSP 1 Score: 199 bits (506), Expect = 6.64e-59
Identity = 99/173 (57.23%), Postives = 125/173 (72.25%), Query Frame = 0

Query: 1   MSLCRD-----PTNGLQYSRIEKVDRIYDFLTGLNPKFDVVRGHILGKRPIPSLMEVCSE 60
           M LCR+     P +G QY+++E+ DR+YDFL  LNPKFD V G ILG+RP+ SLME+C E
Sbjct: 264 MDLCRETVWDIPNDGTQYAKLEEADRVYDFLVRLNPKFDNVCGRILGQRPLHSLMEICFE 323

Query: 61  ICLEEDRTSAMNISTTPSIDSVAFTARSSTSGNDKHNGKPIPIREPCKQQWHTKEQCSKL 120
           +CLEEDRT+AM++ TTP+IDS AF+ARSS   +DK+NGK IP+ E CK+QWHTK+QC KL
Sbjct: 324 VCLEEDRTNAMSVLTTPTIDSAAFSARSSDHDSDKNNGKSIPVCEYCKKQWHTKDQCWKL 383

Query: 121 HGRPLGDKKRPSNDKQNTGRTYVSEFV--GPSQPPESQGNQIDHGPTTLGVIV 166
           HGRPL  KK+ SN+KQN+GR Y+SE      SQ  +   NQ      TLG I 
Sbjct: 384 HGRPLEGKKQSSNEKQNSGRAYISEITPTSTSQSTDPTANQTK--TPTLGAIA 434

The following BLAST results are available for this feature:
Match NameE-valueIdentityDescription
KAA0064801.11.46e-11597.02Beta-galactosidase [Cucumis melo var. makuwa][more]
TYK06446.11.09e-6565.87Beta-galactosidase [Cucumis melo var. makuwa][more]
KAA0068062.11.84e-6465.27Beta-galactosidase [Cucumis melo var. makuwa][more]
TYK03453.13.05e-5958.96Beta-galactosidase [Cucumis melo var. makuwa][more]
KAA0057570.11.37e-5857.23uncharacterized protein E6C27_scaffold497G00420 [Cucumis melo var. makuwa] >TYK1... [more]
Match NameE-valueIdentityDescription
Match NameE-valueIdentityDescription
A0A5A7VGG47.07e-11697.02Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold82G00... [more]
A0A5D3C7Y35.30e-6665.87Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold163G0... [more]
A0A5A7VI948.93e-6565.27Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold238G0... [more]
A0A5D3BUT81.48e-5958.96Beta-galactosidase OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold121G0... [more]
A0A5D3D4246.64e-5957.23Retrotran_gag_3 domain-containing protein OS=Cucumis melo var. makuwa OX=1194695... [more]
Match NameE-valueIdentityDescription
InterPro
Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25
IPR TermIPR DescriptionSourceSource TermSource DescriptionAlignment
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 111..130
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 111..160
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 81..100
NoneNo IPR availableMOBIDB_LITEmobidb-litedisorder_predictioncoord: 131..160

Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C011382.jh1.t1MELO3C011382.jh1.t1mRNA