MELO3C010895 (gene) Melon (DHL92) v4

Overview


Name	MELO3C010895
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	CST complex subunit CTC1
Location	chr03: 27757842 .. 27758520 (+)
RNA-Seq Expression	MELO3C010895
Synteny	MELO3C010895

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonfive_prime_UTRCDSpolypeptidethree_prime_UTR

Hold the cursor over a type above to highlight its positions in the sequence below.

CTCGCCATTACAGAGTGACTTTGTTTTCTTCAGGTTCGGATTTTGCTGGTAAAAAGAAAAGTGTAAATCTTGTGGCCGTCGCCGGAGCATTACATTAGAGCTCTTGCTCCGGCCAAATGTCATTCCCAATTGAACAACAATCTCCGCCGGGATTGCAGCAAAATTATGTCGGCCATCCGGGTAGCGGCTCCGTCGGTCCGGTCATTGGAGTCCTCGTCGTCATCATTGTGTTTGCCGTCGTCGCCGTCGTTGTGGGGCGGCTGTGCTCGGGAAGAAGCATAATGGGCTATGGTCATTTCGACTTGGAGAGCTGGGCGGAGACAAAATGTTCCTCTTGCATTGACGGAAGGATTACCCCACCACCGCCGAGGGTCGATGCCTCCACCGCCGCTGCCTCCTCTCTCCCGGCAGGGACAATGGCGGTCGGAACCCAGCAAGAAACTAAGCAAGAAGAACCAGCTTCGCAAAACCCATCTGCCAACGCTTGATTTCTAAGATGGAAATCGTTGATAATTGGATTATTAGCTCAAAATTTTCTCTGTAATTTTCATTTTTTTCCCCTTCATTTGATTCTTTTTTCTTCCGCTGTCAGAATTAGAAAATTTGTGAAACTCTCTCTTAATTGTAATGCCATTTTTCTGTCAGCTTTTCTCCATCAAGTTCGGAAGTTTGATTTTCA

mRNA sequence

CTCGCCATTACAGAGTGACTTTGTTTTCTTCAGGTTCGGATTTTGCTGGTAAAAAGAAAAGTGTAAATCTTGTGGCCGTCGCCGGAGCATTACATTAGAGCTCTTGCTCCGGCCAAATGTCATTCCCAATTGAACAACAATCTCCGCCGGGATTGCAGCAAAATTATGTCGGCCATCCGGGTAGCGGCTCCGTCGGTCCGGTCATTGGAGTCCTCGTCGTCATCATTGTGTTTGCCGTCGTCGCCGTCGTTGTGGGGCGGCTGTGCTCGGGAAGAAGCATAATGGGCTATGGTCATTTCGACTTGGAGAGCTGGGCGGAGACAAAATGTTCCTCTTGCATTGACGGAAGGATTACCCCACCACCGCCGAGGGTCGATGCCTCCACCGCCGCTGCCTCCTCTCTCCCGGCAGGGACAATGGCGGTCGGAACCCAGCAAGAAACTAAGCAAGAAGAACCAGCTTCGCAAAACCCATCTGCCAACGCTTGATTTCTAAGATGGAAATCGTTGATAATTGGATTATTAGCTCAAAATTTTCTCTGTAATTTTCATTTTTTTCCCCTTCATTTGATTCTTTTTTCTTCCGCTGTCAGAATTAGAAAATTTGTGAAACTCTCTCTTAATTGTAATGCCATTTTTCTGTCAGCTTTTCTCCATCAAGTTCGGAAGTTTGATTTTCA

Coding sequence (CDS)

ATGTCATTCCCAATTGAACAACAATCTCCGCCGGGATTGCAGCAAAATTATGTCGGCCATCCGGGTAGCGGCTCCGTCGGTCCGGTCATTGGAGTCCTCGTCGTCATCATTGTGTTTGCCGTCGTCGCCGTCGTTGTGGGGCGGCTGTGCTCGGGAAGAAGCATAATGGGCTATGGTCATTTCGACTTGGAGAGCTGGGCGGAGACAAAATGTTCCTCTTGCATTGACGGAAGGATTACCCCACCACCGCCGAGGGTCGATGCCTCCACCGCCGCTGCCTCCTCTCTCCCGGCAGGGACAATGGCGGTCGGAACCCAGCAAGAAACTAAGCAAGAAGAACCAGCTTCGCAAAACCCATCTGCCAACGCTTGA

Protein sequence

MSFPIEQQSPPGLQQNYVGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAETKCSSCIDGRITPPPPRVDASTAAASSLPAGTMAVGTQQETKQEEPASQNPSANA

Homology

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BLAST of MELO3C010895 vs. NCBI nr
Match: KAA0063096.1 (putative transmembrane protein [Cucumis melo var. makuwa])

HSP 1 Score: 240.0 bits (611), Expect = 1.1e-59
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MSFPIEQQSPPGLQQNYVGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGYGH 60
           MSFPIEQQSPPGLQQNYVGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGYGH
Sbjct: 1   MSFPIEQQSPPGLQQNYVGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGYGH 60

Query: 61  FDLESWAETKCSSCIDGRITPPPPRVDASTAAASSLPAGTMAVGTQQETKQEEPASQNPS 120
           FDLESWAETKCSSCIDGRITPPPPRVDASTAAASSLPAGTMAVGTQQETKQEEPASQNPS
Sbjct: 61  FDLESWAETKCSSCIDGRITPPPPRVDASTAAASSLPAGTMAVGTQQETKQEEPASQNPS 120

Query: 121 ANA 124
           ANA
Sbjct: 121 ANA 123

[Close]

BLAST of MELO3C010895 vs. NCBI nr
Match: XP_031737057.1 (uncharacterized protein LOC116402140 [Cucumis sativus] >KGN62547.1 hypothetical protein Csa_022283 [Cucumis sativus])

HSP 1 Score: 231.9 bits (590), Expect = 3.0e-57
Identity = 120/124 (96.77%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 1   MSFPIEQQSPPGLQQNYVGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGYGH 60
           MS PIEQQSPPG+QQNYVGHPGSGSVGPVIGVL+VIIVFAVVAVVVGRLCSGRSIMGYGH
Sbjct: 1   MSLPIEQQSPPGMQQNYVGHPGSGSVGPVIGVLIVIIVFAVVAVVVGRLCSGRSIMGYGH 60

Query: 61  FDLESWAETKCSSCIDGRITPPPPRVDAS-TAAASSLPAGTMAVGTQQETKQEEPASQNP 120
           FDLESWAETKCSSCIDGRITPPPPRVDAS TAAASSLPAGTMAVGTQQETKQEEPASQNP
Sbjct: 61  FDLESWAETKCSSCIDGRITPPPPRVDASTTAAASSLPAGTMAVGTQQETKQEEPASQNP 120

Query: 121 SANA 124
           SANA
Sbjct: 121 SANA 124

[Close]

BLAST of MELO3C010895 vs. NCBI nr
Match: XP_038885752.1 (uncharacterized protein LOC120076044 [Benincasa hispida])

HSP 1 Score: 200.3 bits (508), Expect = 9.7e-48
Identity = 110/127 (86.61%), Postives = 113/127 (88.98%), Query Frame = 0


Query: 1   MSFPIEQQSPPG--LQQNYVGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGY 60
           MS PIEQQSPP   +QQNY GHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGY
Sbjct: 1   MSLPIEQQSPPAAEMQQNYGGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGY 60

Query: 61  GHFDLESWAETKCSSCIDGRITPPPPRVDASTAAASSLPAGTMAVGTQQETK--QEEPAS 120
           GHFDLESWAETKCSSCIDGRI+PPPPRVD   AAA+SLPAGTMA   QQETK  QEEPAS
Sbjct: 61  GHFDLESWAETKCSSCIDGRISPPPPRVD-GCAAAASLPAGTMAARPQQETKQEQEEPAS 120

Query: 121 QNPSANA 124
           QNP ANA
Sbjct: 121 QNPPANA 126

[Close]

BLAST of MELO3C010895 vs. NCBI nr
Match: KAG6598392.1 (hypothetical protein SDJN03_08170, partial [Cucurbita argyrosperma subsp. sororia])

HSP 1 Score: 186.0 bits (471), Expect = 1.9e-43
Identity = 103/125 (82.40%), Postives = 108/125 (86.40%), Query Frame = 0


Query: 1   MSFPIEQQSPP--GLQQNYVGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGY 60
           MS PIEQQSPP  G+   Y GHP SGSVGPVIGVLVVIIVFAVVAVVVGRLCSG SIMGY
Sbjct: 1   MSLPIEQQSPPATGMLPPYGGHPVSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGMSIMGY 60

Query: 61  GHFDLESWAETKCSSCIDGRITPPPPRVDASTAAASSLPAGTMAVGTQQETKQEEPASQN 120
           GHFDLESWAETKCSSCIDGRI+  PPRV+ S AA  SLP GTMAV TQQETKQEEPASQN
Sbjct: 61  GHFDLESWAETKCSSCIDGRISSTPPRVNVSPAA--SLPTGTMAVRTQQETKQEEPASQN 120

Query: 121 PSANA 124
           P+A+A
Sbjct: 121 PTASA 123

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BLAST of MELO3C010895 vs. NCBI nr
Match: XP_022144319.1 (uncharacterized protein LOC111014030 [Momordica charantia])

HSP 1 Score: 185.7 bits (470), Expect = 2.5e-43
Identity = 98/123 (79.67%), Postives = 106/123 (86.18%), Query Frame = 0


Query: 1   MSFPIEQQSP--PGLQQNYVGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGY 60
           MS PIEQQSP  PG+QQ Y GH  +GSVGPVIGVLVVIIVFAVVAVVVGRLCSG++IMGY
Sbjct: 1   MSLPIEQQSPPAPGMQQPYGGHLSNGSVGPVIGVLVVIIVFAVVAVVVGRLCSGKTIMGY 60

Query: 61  GHFDLESWAETKCSSCIDGRITPPPPRVDASTAAASSLPAGTMAVGTQQETKQEEPASQN 120
           GHFDLESWAETKCSSCIDGRI+PPPPR + S A  ++    TMAV TQQETKQEEPASQN
Sbjct: 61  GHFDLESWAETKCSSCIDGRISPPPPRANVSAATTATALPATMAVQTQQETKQEEPASQN 120

Query: 121 PSA 122
           PSA
Sbjct: 121 PSA 123

[Close]

BLAST of MELO3C010895 vs. ExPASy TrEMBL
Match: A0A5A7V9H6 (Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold43357G00010 PE=4 SV=1)

HSP 1 Score: 240.0 bits (611), Expect = 5.4e-60
Identity = 123/123 (100.00%), Postives = 123/123 (100.00%), Query Frame = 0


Query: 1   MSFPIEQQSPPGLQQNYVGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGYGH 60
           MSFPIEQQSPPGLQQNYVGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGYGH
Sbjct: 1   MSFPIEQQSPPGLQQNYVGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGYGH 60

Query: 61  FDLESWAETKCSSCIDGRITPPPPRVDASTAAASSLPAGTMAVGTQQETKQEEPASQNPS 120
           FDLESWAETKCSSCIDGRITPPPPRVDASTAAASSLPAGTMAVGTQQETKQEEPASQNPS
Sbjct: 61  FDLESWAETKCSSCIDGRITPPPPRVDASTAAASSLPAGTMAVGTQQETKQEEPASQNPS 120

Query: 121 ANA 124
           ANA
Sbjct: 121 ANA 123

[Close]

BLAST of MELO3C010895 vs. ExPASy TrEMBL
Match: A0A0A0LP67 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360640 PE=4 SV=1)

HSP 1 Score: 231.9 bits (590), Expect = 1.5e-57
Identity = 120/124 (96.77%), Postives = 122/124 (98.39%), Query Frame = 0


Query: 1   MSFPIEQQSPPGLQQNYVGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGYGH 60
           MS PIEQQSPPG+QQNYVGHPGSGSVGPVIGVL+VIIVFAVVAVVVGRLCSGRSIMGYGH
Sbjct: 1   MSLPIEQQSPPGMQQNYVGHPGSGSVGPVIGVLIVIIVFAVVAVVVGRLCSGRSIMGYGH 60

Query: 61  FDLESWAETKCSSCIDGRITPPPPRVDAS-TAAASSLPAGTMAVGTQQETKQEEPASQNP 120
           FDLESWAETKCSSCIDGRITPPPPRVDAS TAAASSLPAGTMAVGTQQETKQEEPASQNP
Sbjct: 61  FDLESWAETKCSSCIDGRITPPPPRVDASTTAAASSLPAGTMAVGTQQETKQEEPASQNP 120

Query: 121 SANA 124
           SANA
Sbjct: 121 SANA 124

[Close]

BLAST of MELO3C010895 vs. ExPASy TrEMBL
Match: A0A6J1CRZ5 (uncharacterized protein LOC111014030 OS=Momordica charantia OX=3673 GN=LOC111014030 PE=4 SV=1)

HSP 1 Score: 185.7 bits (470), Expect = 1.2e-43
Identity = 98/123 (79.67%), Postives = 106/123 (86.18%), Query Frame = 0


Query: 1   MSFPIEQQSP--PGLQQNYVGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGY 60
           MS PIEQQSP  PG+QQ Y GH  +GSVGPVIGVLVVIIVFAVVAVVVGRLCSG++IMGY
Sbjct: 1   MSLPIEQQSPPAPGMQQPYGGHLSNGSVGPVIGVLVVIIVFAVVAVVVGRLCSGKTIMGY 60

Query: 61  GHFDLESWAETKCSSCIDGRITPPPPRVDASTAAASSLPAGTMAVGTQQETKQEEPASQN 120
           GHFDLESWAETKCSSCIDGRI+PPPPR + S A  ++    TMAV TQQETKQEEPASQN
Sbjct: 61  GHFDLESWAETKCSSCIDGRISPPPPRANVSAATTATALPATMAVQTQQETKQEEPASQN 120

Query: 121 PSA 122
           PSA
Sbjct: 121 PSA 123

[Close]

BLAST of MELO3C010895 vs. ExPASy TrEMBL
Match: A0A6J1KK79 (uncharacterized protein LOC111496028 OS=Cucurbita maxima OX=3661 GN=LOC111496028 PE=4 SV=1)

HSP 1 Score: 169.5 bits (428), Expect = 8.9e-39
Identity = 97/126 (76.98%), Postives = 105/126 (83.33%), Query Frame = 0


Query: 1   MSFPIEQQSP--PGLQQNYVGHPGS-GSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMG 60
           MS PI+QQSP  PG+QQ Y GH  S GSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMG
Sbjct: 1   MSLPIDQQSPPAPGMQQPYGGHASSGGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMG 60

Query: 61  YGHFDLESWAETKCSSCIDGRITPPPPRVDASTAAASSLPAGTMAVGTQQETKQEEPASQ 120
           YGHFDLE WAE KCSSCIDGRI+ P PRV+ STAAA SLPA TM+V    +T+Q+EPASQ
Sbjct: 61  YGHFDLERWAEVKCSSCIDGRISSPSPRVNVSTAAA-SLPAATMSV----QTQQDEPASQ 120

Query: 121 NPSANA 124
           NP  NA
Sbjct: 121 NPPPNA 121

[Close]

BLAST of MELO3C010895 vs. ExPASy TrEMBL
Match: A0A6J5W971 (Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS8720 PE=4 SV=1)

HSP 1 Score: 127.1 bits (318), Expect = 5.1e-26
Identity = 66/122 (54.10%), Postives = 86/122 (70.49%), Query Frame = 0


Query: 1   MSFPIEQQSPPG--LQQNYVGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGY 60
           MS P++QQ PP   LQQN   H   GS+G V+ VLVV+I+  VVAVV+GRLCSGRSIMGY
Sbjct: 1   MSMPLDQQPPPDFVLQQNANPHSPHGSIGAVVAVLVVVIILGVVAVVIGRLCSGRSIMGY 60

Query: 61  GHFDLESWAETKCSSCIDGRITPPPPRVDASTAAASSLPAGTMAVGTQQETKQEEPASQN 120
           GH+DLESWAETKCSSCIDGRI PP  R + S ++ S+        G++ + +++ P +  
Sbjct: 61  GHYDLESWAETKCSSCIDGRINPPLSRPNVSCSSVSTSTPAQTHQGSELQQEEQSPQTPQ 120

[Close]

BLAST of MELO3C010895 vs. TAIR 10
Match: AT2G26520.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT3G57500.1); Has 51 Blast hits to 51 proteins in 11 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 87.8 bits (216), Expect = 6.6e-18
Identity = 53/140 (37.86%), Postives = 80/140 (57.14%), Query Frame = 0


Query: 2   SFPIEQQSPPGLQ----QNYVGHPGSGSVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMG 61
           S P+  Q PP  +     + V   G+ ++GP I V +V+ V  V+A V+GRLCSG++I+G
Sbjct: 3   SMPLYWQPPPATEVSQDSSSVSSAGNSTIGPFIAVFIVVTVLCVLASVIGRLCSGKTILG 62

Query: 62  YGHFDLESWAETKCSSCIDGRITP--------PPPR--VDASTAAASSLPAGTMA----- 121
           YG +D+E WAE++C SCIDG I P        PPPR  +  +++  S+   G +A     
Sbjct: 63  YGDYDMERWAESRCGSCIDGHIHPHRPSPSPTPPPRQPLHHTSSGVSAESEGHVADLDHE 122

[Close]

BLAST of MELO3C010895 vs. TAIR 10
Match: AT3G57500.1 (unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TAIR:AT2G26520.1); Has 51 Blast hits to 51 proteins in 11 species: Archae - 0; Bacteria - 1; Metazoa - 0; Fungi - 0; Plants - 50; Viruses - 0; Other Eukaryotes - 0 (source: NCBI BLink). )

HSP 1 Score: 53.9 bits (128), Expect = 1.0e-07
Identity = 35/81 (43.21%), Postives = 44/81 (54.32%), Query Frame = 0


Query: 25  SVGPVIGVLVVIIVFAVVAVVVGRLCSGRSIMGYGHFDLESWAETKCSSCIDGRI----- 84
           S+  ++ VL VI + +V+A V  RLC GR +   G  D+E W E KC SCID  I     
Sbjct: 37  SIETLVVVLAVITILSVLAGVFARLCGGRHLSHGGDHDIEGWVERKCRSCIDAGIPAVSA 96

Query: 85  --TPPPPRVDASTAAASSLPA 99
             +PPPP   A TA   S PA
Sbjct: 97  APSPPPPPPPA-TAEERSKPA 116

The following BLAST results are available for this feature:

BLAST of MELO3C010895 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0063096.1	1.1e-59	100.00	putative transmembrane protein [Cucumis melo var. makuwa]	[more]
XP_031737057.1	3.0e-57	96.77	uncharacterized protein LOC116402140 [Cucumis sativus] >KGN62547.1 hypothetical ...	[more]
XP_038885752.1	9.7e-48	86.61	uncharacterized protein LOC120076044 [Benincasa hispida]	[more]
KAG6598392.1	1.9e-43	82.40	hypothetical protein SDJN03_08170, partial [Cucurbita argyrosperma subsp. sorori...	[more]
XP_022144319.1	2.5e-43	79.67	uncharacterized protein LOC111014030 [Momordica charantia]	[more]

BLAST of MELO3C010895 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C010895 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7V9H6	5.4e-60	100.00	Putative transmembrane protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_s...	[more]
A0A0A0LP67	1.5e-57	96.77	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_2G360640 PE=4 SV=1	[more]
A0A6J1CRZ5	1.2e-43	79.67	uncharacterized protein LOC111014030 OS=Momordica charantia OX=3673 GN=LOC111014...	[more]
A0A6J1KK79	8.9e-39	76.98	uncharacterized protein LOC111496028 OS=Cucurbita maxima OX=3661 GN=LOC111496028...	[more]
A0A6J5W971	5.1e-26	54.10	Uncharacterized protein OS=Prunus armeniaca OX=36596 GN=CURHAP_LOCUS8720 PE=4 SV...	[more]

BLAST of MELO3C010895 vs. TAIR 10


Match Name	E-value	Identity	Description
AT2G26520.1	6.6e-18	37.86	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]
AT3G57500.1	1.0e-07	43.21	unknown protein; BEST Arabidopsis thaliana protein match is: unknown protein (TA...	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 78..123
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 93..123
None	No IPR available	PANTHER	PTHR33429:SF24	EXPRESSED PROTEIN	coord: 1..122
None	No IPR available	PANTHER	PTHR33429	OS02G0708000 PROTEIN-RELATED	coord: 1..122

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C010895.1	MELO3C010895.1	mRNA