MELO3C010558.jh1 (gene) Melon (Harukei-3) v1.41

Overview
NameMELO3C010558.jh1
Typegene
OrganismCucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
DescriptionRetrotransposon protein
Locationchr07: 6558204 .. 6558666 (+)
RNA-Seq ExpressionMELO3C010558.jh1
SyntenyMELO3C010558.jh1
Sequences
The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonstart_codonCDSpolypeptidestop_codon
Hold the cursor over a type above to highlight its positions in the sequence below.
ATGTTTAATGATGGTGTTTCCCTCGGTGATTCACATGATCAAGACATCCCGACGATGTATAGCCAAGGAGTGCATATGTTATCAGATGAGATGTTTGGAATACGTGCAGATCAAGCAAGTGAGAGAAGAAATTGTTCAAGTGGAAGTAAGAGGAAACAAGGTAGCGAACATTATGAAATGGTAGAGGTGATCGTGAGTGCAATGGAATTTGGAAATGATCAATTAAAGGCATTTGAAGATTGGTCAAAAGATAAGCATTCAACGGAGGTCGAATTGCATGCTGAAGTTGTGAAACAGCTGCAAGATATCCCTAAACTACGAAGCCGAGATAGGGCAAAGCTTATGCAAATCCTATTCCGTAGTGTGGAGGCCATTGAGGGATTCTAGTCGATTCCAACATAACTTAAATTGGAGTATTGCAATATTCTCTTGGAAAATAATGTTTGACCAATTAACTATTTTA

mRNA sequence

ATGTTTAATGATGGTGTTTCCCTCGGTGATTCACATGATCAAGACATCCCGACGATGTATAGCCAAGGAGTGCATATGTTATCAGATGAGATGTTTGGAATACGTGCAGATCAAGCAAGTGAGAGAAGAAATTGTTCAAGTGGAAGTAAGAGGAAACAAGGTAGCGAACATTATGAAATGGTAGAGGTGATCGTGAGTGCAATGGAATTTGGAAATGATCAATTAAAGGCATTTGAAGATTGGTCAAAAGATAAGCATTCAACGGAGGTCGAATTGCATGCTGAAGTTGTGAAACAGCTGCAAGATATCCCTAAACTACGAAGCCGAGATAGGGCAAAGCTTATGCAAATCCTATTCCGTAGTGTGGAGGCCATTGAGGGATTCTAGTCGATTCCAACATAACTTAAATTGGAGTATTGCAATATTCTCTTGGAAAATAATGTTTGACCAATTAACTATTTTA

Coding sequence (CDS)

ATGTTTAATGATGGTGTTTCCCTCGGTGATTCACATGATCAAGACATCCCGACGATGTATAGCCAAGGAGTGCATATGTTATCAGATGAGATGTTTGGAATACGTGCAGATCAAGCAAGTGAGAGAAGAAATTGTTCAAGTGGAAGTAAGAGGAAACAAGGTAGCGAACATTATGAAATGGTAGAGGTGATCGTGAGTGCAATGGAATTTGGAAATGATCAATTAAAGGCATTTGAAGATTGGTCAAAAGATAAGCATTCAACGGAGGTCGAATTGCATGCTGAAGTTGTGAAACAGCTGCAAGATATCCCTAAACTACGAAGCCGAGATAGGGCAAAGCTTATGCAAATCCTATTCCGTAGTGTGGAGGCCATTGAGGGATTCTAG

Protein sequence

MFNDGVSLGDSHDQDIPTMYSQGVHMLSDEMFGIRADQASERRNCSSGSKRKQGSEHYEMVEVIVSAMEFGNDQLKAFEDWSKDKHSTEVELHAEVVKQLQDIPKLRSRDRAKLMQILFRSVEAIEGF
Homology
[Close]
BLAST of MELO3C010558.jh1 vs. NCBI nr
Match: ADN33753.1 (hypothetical protein [Cucumis melo subsp. melo] >KAA0052316.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK01879.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 248 bits (633), Expect = 9.68e-83
Identity = 124/128 (96.88%), Postives = 126/128 (98.44%), Query Frame = 0 

Query: 1   MFNDGVSLGDSHDQDIPTMYSQGVHMLSDEMFGIRADQASERRNCSSGSKRKQGSEHYEM 60
           MFNDGV LGDSHDQDIPTMYSQGVHMLS+EMFGIRADQASERRNCSSGSKRKQGSEHYEM
Sbjct: 1   MFNDGVPLGDSHDQDIPTMYSQGVHMLSNEMFGIRADQASERRNCSSGSKRKQGSEHYEM 60

Query: 61  VEVIVSAMEFGNDQLKAFEDWSKDKHSTEVELHAEVVKQLQDIPKLRSRDRAKLMQILFR 120
           VEVI SAMEFGNDQLKAFEDWSKDKHSTEVELHAEVVKQLQDIP+LRSRDRAKLMQILFR
Sbjct: 61  VEVIKSAMEFGNDQLKAFEDWSKDKHSTEVELHAEVVKQLQDIPELRSRDRAKLMQILFR 120

Query: 121 SVEAIEGF 128
           SVEAIEGF
Sbjct: 121 SVEAIEGF 128

[Close]
BLAST of MELO3C010558.jh1 vs. NCBI nr
Match: KAA0031678.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 204 bits (519), Expect = 1.75e-63
Identity = 104/128 (81.25%), Postives = 113/128 (88.28%), Query Frame = 0 

Query: 1   MFNDGVSLGDSHDQDIPTMYSQGVHMLSDEMFGIRADQASERRNCSSGSKRKQGSEHYEM 60
           MFNDGV LGDSH+QDI T+YSQGVHM  DE+FGIRA QASERRN SSGSKRK+GS+HYEM
Sbjct: 116 MFNDGVPLGDSHNQDILTIYSQGVHMSLDEIFGIRAGQASERRNYSSGSKRKRGSKHYEM 175

Query: 61  VEVIVSAMEFGNDQLKAFEDWSKDKHSTEVELHAEVVKQLQDIPKLRSRDRAKLMQILFR 120
           VEVI SA EFGNDQLK   DW K+K +TEVEL  EVVKQLQDIP+LRS+DRAKLMQILFR
Sbjct: 176 VEVISSATEFGNDQLKTITDWPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFR 235

Query: 121 SVEAIEGF 128
           SVEAIEGF
Sbjct: 236 SVEAIEGF 243

[Close]
BLAST of MELO3C010558.jh1 vs. NCBI nr
Match: XP_008441954.1 (PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 retrotransposon protein [Cucumis melo var. makuwa] >TYK08388.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 204 bits (518), Expect = 8.89e-63
Identity = 102/128 (79.69%), Postives = 112/128 (87.50%), Query Frame = 0 

Query: 1   MFNDGVSLGDSHDQDIPTMYSQGVHMLSDEMFGIRADQASERRNCSSGSKRKQGSEHYEM 60
           MFND + LGDSHD+DIPTMYSQGVHM  DEMFGIRA QASERRNCSS SKRK+GSE YE 
Sbjct: 159 MFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYET 218

Query: 61  VEVIVSAMEFGNDQLKAFEDWSKDKHSTEVELHAEVVKQLQDIPKLRSRDRAKLMQILFR 120
           VEVI S MEFGN+QLKA  DW K+K + EVE+ A+VVKQLQDIPKLRS+DRAKLMQILFR
Sbjct: 219 VEVIRSVMEFGNEQLKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFR 278

Query: 121 SVEAIEGF 128
           S+EAIEGF
Sbjct: 279 SLEAIEGF 286

[Close]
BLAST of MELO3C010558.jh1 vs. NCBI nr
Match: KAA0033290.1 (putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nuclease HARBI1 [Cucumis melo var. makuwa])

HSP 1 Score: 204 bits (520), Expect = 5.75e-61
Identity = 103/128 (80.47%), Postives = 113/128 (88.28%), Query Frame = 0 

Query: 1   MFNDGVSLGDSHDQDIPTMYSQGVHMLSDEMFGIRADQASERRNCSSGSKRKQGSEHYEM 60
           MFN  V L DSHDQDIP MYSQGVHM  DEMFGIRA QASER+NCSSGSKRKQGS+HYE 
Sbjct: 352 MFNGDVPLDDSHDQDIPMMYSQGVHMSPDEMFGIRAGQASERKNCSSGSKRKQGSKHYET 411

Query: 61  VEVIVSAMEFGNDQLKAFEDWSKDKHSTEVELHAEVVKQLQDIPKLRSRDRAKLMQILFR 120
           VEVI SA+EFGNDQLKA  +W K+K +TEVEL AEV+KQLQDIP+L+SRDRAKL+QILFR
Sbjct: 412 VEVIKSAIEFGNDQLKAIANWPKEKRATEVELRAEVMKQLQDIPELQSRDRAKLIQILFR 471

Query: 121 SVEAIEGF 128
           SVEAIEGF
Sbjct: 472 SVEAIEGF 479

[Close]
BLAST of MELO3C010558.jh1 vs. NCBI nr
Match: KAA0042340.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK15465.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 192 bits (489), Expect = 1.10e-59
Identity = 98/128 (76.56%), Postives = 108/128 (84.38%), Query Frame = 0 

Query: 1   MFNDGVSLGDSHDQDIPTMYSQGVHMLSDEMFGIRADQASERRNCSSGSKRKQGSEHYEM 60
           MFNDGV LGDSH +DIPTMYSQGV M  DEMFG RA QASERRNCSS SKRKQGS+HYE 
Sbjct: 58  MFNDGVPLGDSHHEDIPTMYSQGVLMSLDEMFGTRAGQASERRNCSSRSKRKQGSQHYET 117

Query: 61  VEVIVSAMEFGNDQLKAFEDWSKDKHSTEVELHAEVVKQLQDIPKLRSRDRAKLMQILFR 120
           VEVI SAM+FGNDQLKA  DW K+K + +VEL A VVKQLQDIPKL++RDR K++QILF 
Sbjct: 118 VEVIRSAMKFGNDQLKAIADWLKEKRAMKVELRALVVKQLQDIPKLQNRDRPKIIQILFH 177

Query: 121 SVEAIEGF 128
           SVE IEGF
Sbjct: 178 SVEGIEGF 185

[Close]
BLAST of MELO3C010558.jh1 vs. ExPASy TrEMBL
Match: A0A5A7UDQ3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold113G001410 PE=4 SV=1)

HSP 1 Score: 248 bits (633), Expect = 4.69e-83
Identity = 124/128 (96.88%), Postives = 126/128 (98.44%), Query Frame = 0 

Query: 1   MFNDGVSLGDSHDQDIPTMYSQGVHMLSDEMFGIRADQASERRNCSSGSKRKQGSEHYEM 60
           MFNDGV LGDSHDQDIPTMYSQGVHMLS+EMFGIRADQASERRNCSSGSKRKQGSEHYEM
Sbjct: 1   MFNDGVPLGDSHDQDIPTMYSQGVHMLSNEMFGIRADQASERRNCSSGSKRKQGSEHYEM 60

Query: 61  VEVIVSAMEFGNDQLKAFEDWSKDKHSTEVELHAEVVKQLQDIPKLRSRDRAKLMQILFR 120
           VEVI SAMEFGNDQLKAFEDWSKDKHSTEVELHAEVVKQLQDIP+LRSRDRAKLMQILFR
Sbjct: 61  VEVIKSAMEFGNDQLKAFEDWSKDKHSTEVELHAEVVKQLQDIPELRSRDRAKLMQILFR 120

Query: 121 SVEAIEGF 128
           SVEAIEGF
Sbjct: 121 SVEAIEGF 128

[Close]
BLAST of MELO3C010558.jh1 vs. ExPASy TrEMBL
Match: E5GBB1 (Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1)

HSP 1 Score: 248 bits (633), Expect = 4.69e-83
Identity = 124/128 (96.88%), Postives = 126/128 (98.44%), Query Frame = 0 

Query: 1   MFNDGVSLGDSHDQDIPTMYSQGVHMLSDEMFGIRADQASERRNCSSGSKRKQGSEHYEM 60
           MFNDGV LGDSHDQDIPTMYSQGVHMLS+EMFGIRADQASERRNCSSGSKRKQGSEHYEM
Sbjct: 1   MFNDGVPLGDSHDQDIPTMYSQGVHMLSNEMFGIRADQASERRNCSSGSKRKQGSEHYEM 60

Query: 61  VEVIVSAMEFGNDQLKAFEDWSKDKHSTEVELHAEVVKQLQDIPKLRSRDRAKLMQILFR 120
           VEVI SAMEFGNDQLKAFEDWSKDKHSTEVELHAEVVKQLQDIP+LRSRDRAKLMQILFR
Sbjct: 61  VEVIKSAMEFGNDQLKAFEDWSKDKHSTEVELHAEVVKQLQDIPELRSRDRAKLMQILFR 120

Query: 121 SVEAIEGF 128
           SVEAIEGF
Sbjct: 121 SVEAIEGF 128

[Close]
BLAST of MELO3C010558.jh1 vs. ExPASy TrEMBL
Match: A0A5D3BZU3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold409G00280 PE=4 SV=1)

HSP 1 Score: 204 bits (519), Expect = 8.47e-64
Identity = 104/128 (81.25%), Postives = 113/128 (88.28%), Query Frame = 0 

Query: 1   MFNDGVSLGDSHDQDIPTMYSQGVHMLSDEMFGIRADQASERRNCSSGSKRKQGSEHYEM 60
           MFNDGV LGDSH+QDI T+YSQGVHM  DE+FGIRA QASERRN SSGSKRK+GS+HYEM
Sbjct: 116 MFNDGVPLGDSHNQDILTIYSQGVHMSLDEIFGIRAGQASERRNYSSGSKRKRGSKHYEM 175

Query: 61  VEVIVSAMEFGNDQLKAFEDWSKDKHSTEVELHAEVVKQLQDIPKLRSRDRAKLMQILFR 120
           VEVI SA EFGNDQLK   DW K+K +TEVEL  EVVKQLQDIP+LRS+DRAKLMQILFR
Sbjct: 176 VEVISSATEFGNDQLKTITDWPKEKRATEVELRTEVVKQLQDIPQLRSQDRAKLMQILFR 235

Query: 121 SVEAIEGF 128
           SVEAIEGF
Sbjct: 236 SVEAIEGF 243

[Close]
BLAST of MELO3C010558.jh1 vs. ExPASy TrEMBL
Match: A0A5A7U0H7 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold648G002060 PE=4 SV=1)

HSP 1 Score: 204 bits (518), Expect = 4.30e-63
Identity = 102/128 (79.69%), Postives = 112/128 (87.50%), Query Frame = 0 

Query: 1   MFNDGVSLGDSHDQDIPTMYSQGVHMLSDEMFGIRADQASERRNCSSGSKRKQGSEHYEM 60
           MFND + LGDSHD+DIPTMYSQGVHM  DEMFGIRA QASERRNCSS SKRK+GSE YE 
Sbjct: 159 MFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYET 218

Query: 61  VEVIVSAMEFGNDQLKAFEDWSKDKHSTEVELHAEVVKQLQDIPKLRSRDRAKLMQILFR 120
           VEVI S MEFGN+QLKA  DW K+K + EVE+ A+VVKQLQDIPKLRS+DRAKLMQILFR
Sbjct: 219 VEVIRSVMEFGNEQLKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFR 278

Query: 121 SVEAIEGF 128
           S+EAIEGF
Sbjct: 279 SLEAIEGF 286

[Close]
BLAST of MELO3C010558.jh1 vs. ExPASy TrEMBL
Match: A0A1S3B4L3 (uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=4 SV=1)

HSP 1 Score: 204 bits (518), Expect = 4.30e-63
Identity = 102/128 (79.69%), Postives = 112/128 (87.50%), Query Frame = 0 

Query: 1   MFNDGVSLGDSHDQDIPTMYSQGVHMLSDEMFGIRADQASERRNCSSGSKRKQGSEHYEM 60
           MFND + LGDSHD+DIPTMYSQGVHM  DEMFGIRA QASERRNCSS SKRK+GSE YE 
Sbjct: 159 MFNDTIPLGDSHDEDIPTMYSQGVHMSPDEMFGIRAGQASERRNCSSVSKRKRGSERYET 218

Query: 61  VEVIVSAMEFGNDQLKAFEDWSKDKHSTEVELHAEVVKQLQDIPKLRSRDRAKLMQILFR 120
           VEVI S MEFGN+QLKA  DW K+K + EVE+ A+VVKQLQDIPKLRS+DRAKLMQILFR
Sbjct: 219 VEVIRSVMEFGNEQLKAIADWPKEKRAMEVEMRAQVVKQLQDIPKLRSQDRAKLMQILFR 278

Query: 121 SVEAIEGF 128
           S+EAIEGF
Sbjct: 279 SLEAIEGF 286

The following BLAST results are available for this feature:
BLAST of MELO3C010558.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
ADN33753.19.68e-8396.88hypothetical protein [Cucumis melo subsp. melo] >KAA0052316.1 retrotransposon pr... [more]
KAA0031678.11.75e-6381.25retrotransposon protein [Cucumis melo var. makuwa] >TYK04432.1 retrotransposon p... [more]
XP_008441954.18.89e-6379.69PREDICTED: uncharacterized protein LOC103485953 [Cucumis melo] >KAA0047736.1 ret... [more]
KAA0033290.15.75e-6180.47putative nuclease HARBI1 [Cucumis melo var. makuwa] >TYK14818.1 putative nucleas... [more]
KAA0042340.11.10e-5976.56retrotransposon protein [Cucumis melo var. makuwa] >TYK15465.1 retrotransposon p... [more]
BLAST of MELO3C010558.jh1 vs. NCBI nr
Match NameE-valueIdentityDescription
BLAST of MELO3C010558.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
A0A5A7UDQ34.69e-8396.88Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
E5GBB14.69e-8396.88Uncharacterized protein OS=Cucumis melo subsp. melo OX=412675 PE=4 SV=1[more]
A0A5D3BZU38.47e-6481.25Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A5A7U0H74.30e-6379.69Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold... [more]
A0A1S3B4L34.30e-6379.69uncharacterized protein LOC103485953 OS=Cucumis melo OX=3656 GN=LOC103485953 PE=... [more]
BLAST of MELO3C010558.jh1 vs. ExPASy TrEMBL
Match NameE-valueIdentityDescription
Relationships

The following mRNA feature(s) are a part of this gene:

Feature NameUnique NameType
MELO3C010558.jh1.t1MELO3C010558.jh1.t1mRNA