MELO3C010416.jh1 (gene) Melon (Harukei-3) v1.41

Overview


Name	MELO3C010416.jh1
Type	gene
Organism	Cucumis melo var. reticulatus cv. Harukei-3 (Melon (Harukei-3) v1.41)
Description	Ribosomal protein-like protein
Location	chr07: 9541657 .. 9542464 (-)
RNA-Seq Expression	MELO3C010416.jh1
Synteny	MELO3C010416.jh1

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptidestart_codonstop_codon

Hold the cursor over a type above to highlight its positions in the sequence below.

GAATATTGTAGACGTGTAGTGTAGATTTAGTTTTCTCCTCGTTTATCTGTTATCCTACCTTTTTCCCCATTAGCCATTATCTCAAAATTTGGGTGCAGCAATGGAAGATTCAGGTTCACCAGCGCCTCCAAATTCTCTCCCCCAAGCCCAACACAACATTTCTCCAGCAGTAAGAAGTAGAAGAAAGCCTCCTTCCCCACAGGAACTCATATCCCACTACGAATCCCAAGGCCATACTTCTCATGATGCTTCAATCAAGGTAATTGATGACCTTCAGAATGCTCTCTTCAAAATCATCTCCTCCGGCAGAGGCAAAAAGGACAAGCTTCTGCTTGAGACCTCCAGGAAAATCGATGCTACCAATAGTCGTCTTGCCGTTCTCGACCTCAAGTTGGATTCCAAGCCAGGTTATGCCGAGACTTTTGCCCTAGGTTTGGCTTCTGGGTCTGTTTTGAATGGACTTGGGACTGTGATGCCCCATGTTTTTGGGGCTCTCACCAATATTTGGAGTTCCGTTACTAATCTTACTAAGCATTCTTGAATTTTGATTGATACAAAACTAGTCTTCGCTTTTGTGGTTTTGTTTTTCTATTTAGTTAGTTCAGGTGGTTGATAGTTGCTGTTGTTGGTTAGATACTCGGGAACCCTAATATTTGAGTTTGAGCTATGCGTTTTCTTTTCCCCCCCTTTTTGGATTGGTCTTTCATGATTCACATTTCACTTCGAACAATGATTTTTCGGATTTCATGTAGGGTTCTTTCTCCTCCATAACAAGTCAATAAAGTTAATTAAAAATAAATGATAAAAA

mRNA sequence

GAATATTGTAGACGTGTAGTGTAGATTTAGTTTTCTCCTCGTTTATCTGTTATCCTACCTTTTTCCCCATTAGCCATTATCTCAAAATTTGGGTGCAGCAATGGAAGATTCAGGTTCACCAGCGCCTCCAAATTCTCTCCCCCAAGCCCAACACAACATTTCTCCAGCAGTAAGAAGTAGAAGAAAGCCTCCTTCCCCACAGGAACTCATATCCCACTACGAATCCCAAGGCCATACTTCTCATGATGCTTCAATCAAGGTAATTGATGACCTTCAGAATGCTCTCTTCAAAATCATCTCCTCCGGCAGAGGCAAAAAGGACAAGCTTCTGCTTGAGACCTCCAGGAAAATCGATGCTACCAATAGTCGTCTTGCCGTTCTCGACCTCAAGTTGGATTCCAAGCCAGGTTATGCCGAGACTTTTGCCCTAGGTTTGGCTTCTGGGTCTGTTTTGAATGGACTTGGGACTGTGATGCCCCATGTTTTTGGGGCTCTCACCAATATTTGGAGTTCCGTTACTAATCTTACTAAGCATTCTTGAATTTTGATTGATACAAAACTAGTCTTCGCTTTTGTGGTTTTGTTTTTCTATTTAGTTAGTTCAGGTGGTTGATAGTTGCTGTTGTTGGTTAGATACTCGGGAACCCTAATATTTGAGTTTGAGCTATGCGTTTTCTTTTCCCCCCCTTTTTGGATTGGTCTTTCATGATTCACATTTCACTTCGAACAATGATTTTTCGGATTTCATGTAGGGTTCTTTCTCCTCCATAACAAGTCAATAAAGTTAATTAAAAATAAATGATAAAAA

Coding sequence (CDS)

ATGGAAGATTCAGGTTCACCAGCGCCTCCAAATTCTCTCCCCCAAGCCCAACACAACATTTCTCCAGCAGTAAGAAGTAGAAGAAAGCCTCCTTCCCCACAGGAACTCATATCCCACTACGAATCCCAAGGCCATACTTCTCATGATGCTTCAATCAAGGTAATTGATGACCTTCAGAATGCTCTCTTCAAAATCATCTCCTCCGGCAGAGGCAAAAAGGACAAGCTTCTGCTTGAGACCTCCAGGAAAATCGATGCTACCAATAGTCGTCTTGCCGTTCTCGACCTCAAGTTGGATTCCAAGCCAGGTTATGCCGAGACTTTTGCCCTAGGTTTGGCTTCTGGGTCTGTTTTGAATGGACTTGGGACTGTGATGCCCCATGTTTTTGGGGCTCTCACCAATATTTGGAGTTCCGTTACTAATCTTACTAAGCATTCTTGA

Protein sequence

MEDSGSPAPPNSLPQAQHNISPAVRSRRKPPSPQELISHYESQGHTSHDASIKVIDDLQNALFKIISSGRGKKDKLLLETSRKIDATNSRLAVLDLKLDSKPGYAETFALGLASGSVLNGLGTVMPHVFGALTNIWSSVTNLTKHS

Homology

[Close]

BLAST of MELO3C010416.jh1 vs. NCBI nr
Match: XP_016899843.1 (PREDICTED: uncharacterized protein LOC103487537 [Cucumis melo] >KAA0064210.1 putative ribosomal-like protein [Cucumis melo var. makuwa] >TYK02818.1 putative ribosomal-like protein [Cucumis melo var. makuwa])

HSP 1 Score: 288 bits (736), Expect = 7.26e-98
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MEDSGSPAPPNSLPQAQHNISPAVRSRRKPPSPQELISHYESQGHTSHDASIKVIDDLQN 60
           MEDSGSPAPPNSLPQAQHNISPAVRSRRKPPSPQELISHYESQGHTSHDASIKVIDDLQN
Sbjct: 1   MEDSGSPAPPNSLPQAQHNISPAVRSRRKPPSPQELISHYESQGHTSHDASIKVIDDLQN 60

Query: 61  ALFKIISSGRGKKDKLLLETSRKIDATNSRLAVLDLKLDSKPGYAETFALGLASGSVLNG 120
           ALFKIISSGRGKKDKLLLETSRKIDATNSRLAVLDLKLDSKPGYAETFALGLASGSVLNG
Sbjct: 61  ALFKIISSGRGKKDKLLLETSRKIDATNSRLAVLDLKLDSKPGYAETFALGLASGSVLNG 120

Query: 121 LGTVMPHVFGALTNIWSSVTNLTKHS 146
           LGTVMPHVFGALTNIWSSVTNLTKHS
Sbjct: 121 LGTVMPHVFGALTNIWSSVTNLTKHS 146

[Close]

BLAST of MELO3C010416.jh1 vs. NCBI nr
Match: XP_011653828.1 (uncharacterized protein LOC101209567 [Cucumis sativus])

HSP 1 Score: 258 bits (660), Expect = 2.82e-86
Identity = 133/146 (91.10%), Postives = 136/146 (93.15%), Query Frame = 0


Query: 1   MEDSGSPAPPNSLPQAQHNISPAVRSRRKPPSPQELISHYESQGHTSHDASIKVIDDLQN 60
           MEDSGSPA PNSLP+ Q NISP VRS RKPPSPQELISHYESQG TSHDASIKVIDDLQN
Sbjct: 1   MEDSGSPASPNSLPKGQDNISPTVRSVRKPPSPQELISHYESQGLTSHDASIKVIDDLQN 60

Query: 61  ALFKIISSGRGKKDKLLLETSRKIDATNSRLAVLDLKLDSKPGYAETFALGLASGSVLNG 120
           ALF+IISSGRG KDK LLETSRK+DATNSRLAVLDLKLDSKPGYAETFALGLASGSVLNG
Sbjct: 61  ALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDSKPGYAETFALGLASGSVLNG 120

Query: 121 LGTVMPHVFGALTNIWSSVTNLTKHS 146
            GTVMPHVF ALTNIWSSVTNLTKHS
Sbjct: 121 FGTVMPHVFRALTNIWSSVTNLTKHS 146

[Close]

BLAST of MELO3C010416.jh1 vs. NCBI nr
Match: XP_038893730.1 (uncharacterized protein LOC120082569 [Benincasa hispida])

HSP 1 Score: 238 bits (606), Expect = 5.50e-78
Identity = 123/149 (82.55%), Postives = 134/149 (89.93%), Query Frame = 0


Query: 1   MEDSGSPAPPNSLPQAQHNISPAVRS---RRKPPSPQELISHYESQGHTSHDASIKVIDD 60
           M +S S APPNSLPQ     +P   S   RRKPPSPQELISHYESQG TSHDASIKVI+D
Sbjct: 1   MGESHSSAPPNSLPQDNSTANPMTSSGTRRRKPPSPQELISHYESQGLTSHDASIKVIED 60

Query: 61  LQNALFKIISSGRGKKDKLLLETSRKIDATNSRLAVLDLKLDSKPGYAETFALGLASGSV 120
           LQNALF+IISSGRGKKDKLL+ETSRKIDATN+RLA+LDLKLDSKPGYAE+FALGLASGSV
Sbjct: 61  LQNALFRIISSGRGKKDKLLVETSRKIDATNNRLAILDLKLDSKPGYAESFALGLASGSV 120

Query: 121 LNGLGTVMPHVFGALTNIWSSVTNLTKHS 146
           L+G+GTVMPHVFGALTNIWSSV+NLTKHS
Sbjct: 121 LSGIGTVMPHVFGALTNIWSSVSNLTKHS 149

[Close]

BLAST of MELO3C010416.jh1 vs. NCBI nr
Match: XP_022980748.1 (uncharacterized protein LOC111480022 [Cucurbita maxima])

HSP 1 Score: 224 bits (572), Expect = 8.34e-73
Identity = 116/149 (77.85%), Postives = 128/149 (85.91%), Query Frame = 0


Query: 1   MEDSGSPAPPNSLPQAQHNISPAVRS---RRKPPSPQELISHYESQGHTSHDASIKVIDD 60
           M DS SPA  NSLPQ  +  +P   S   RRK PSPQEL+SHYESQG TSHDASIKVI+D
Sbjct: 1   MADSNSPATQNSLPQDNNTATPMASSGAQRRKLPSPQELVSHYESQGLTSHDASIKVIED 60

Query: 61  LQNALFKIISSGRGKKDKLLLETSRKIDATNSRLAVLDLKLDSKPGYAETFALGLASGSV 120
           LQNAL +IISSGRGKKDKLL++TSRKIDATN+RLA+LDLKLDSKPGYA+TFALGLASGSV
Sbjct: 61  LQNALVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGSV 120

Query: 121 LNGLGTVMPHVFGALTNIWSSVTNLTKHS 146
           LNG+G VMPHVFGAL NIWSSV+  TKHS
Sbjct: 121 LNGIGAVMPHVFGALANIWSSVSKFTKHS 149

[Close]

BLAST of MELO3C010416.jh1 vs. NCBI nr
Match: XP_022955496.1 (uncharacterized protein LOC111457504 [Cucurbita moschata])

HSP 1 Score: 223 bits (569), Expect = 2.47e-72
Identity = 115/150 (76.67%), Postives = 128/150 (85.33%), Query Frame = 0


Query: 1   MEDSGSPAPPNSLPQAQHNISPAVRS----RRKPPSPQELISHYESQGHTSHDASIKVID 60
           M DS SPA  NSLPQ  +  +P   S    RRK PSPQEL+SHYESQG TSHDASIKVI+
Sbjct: 1   MADSNSPATQNSLPQDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIE 60

Query: 61  DLQNALFKIISSGRGKKDKLLLETSRKIDATNSRLAVLDLKLDSKPGYAETFALGLASGS 120
           DLQNAL +IISSGRGKKDKLL++TSRKIDATN+RLA+LDLKLDSKPGYA+TFALGLASGS
Sbjct: 61  DLQNALVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGS 120

Query: 121 VLNGLGTVMPHVFGALTNIWSSVTNLTKHS 146
           VLNG+G VMPHVFGA+ NIWSSV+  TKHS
Sbjct: 121 VLNGIGAVMPHVFGAIANIWSSVSKFTKHS 150

[Close]

BLAST of MELO3C010416.jh1 vs. ExPASy TrEMBL
Match: A0A5A7VAF7 (Putative ribosomal-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G00060 PE=4 SV=1)

HSP 1 Score: 288 bits (736), Expect = 3.51e-98
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MEDSGSPAPPNSLPQAQHNISPAVRSRRKPPSPQELISHYESQGHTSHDASIKVIDDLQN 60
           MEDSGSPAPPNSLPQAQHNISPAVRSRRKPPSPQELISHYESQGHTSHDASIKVIDDLQN
Sbjct: 1   MEDSGSPAPPNSLPQAQHNISPAVRSRRKPPSPQELISHYESQGHTSHDASIKVIDDLQN 60

Query: 61  ALFKIISSGRGKKDKLLLETSRKIDATNSRLAVLDLKLDSKPGYAETFALGLASGSVLNG 120
           ALFKIISSGRGKKDKLLLETSRKIDATNSRLAVLDLKLDSKPGYAETFALGLASGSVLNG
Sbjct: 61  ALFKIISSGRGKKDKLLLETSRKIDATNSRLAVLDLKLDSKPGYAETFALGLASGSVLNG 120

Query: 121 LGTVMPHVFGALTNIWSSVTNLTKHS 146
           LGTVMPHVFGALTNIWSSVTNLTKHS
Sbjct: 121 LGTVMPHVFGALTNIWSSVTNLTKHS 146

[Close]

BLAST of MELO3C010416.jh1 vs. ExPASy TrEMBL
Match: A0A1S4DV46 (uncharacterized protein LOC103487537 OS=Cucumis melo OX=3656 GN=LOC103487537 PE=4 SV=1)

HSP 1 Score: 288 bits (736), Expect = 3.51e-98
Identity = 146/146 (100.00%), Postives = 146/146 (100.00%), Query Frame = 0


Query: 1   MEDSGSPAPPNSLPQAQHNISPAVRSRRKPPSPQELISHYESQGHTSHDASIKVIDDLQN 60
           MEDSGSPAPPNSLPQAQHNISPAVRSRRKPPSPQELISHYESQGHTSHDASIKVIDDLQN
Sbjct: 1   MEDSGSPAPPNSLPQAQHNISPAVRSRRKPPSPQELISHYESQGHTSHDASIKVIDDLQN 60

Query: 61  ALFKIISSGRGKKDKLLLETSRKIDATNSRLAVLDLKLDSKPGYAETFALGLASGSVLNG 120
           ALFKIISSGRGKKDKLLLETSRKIDATNSRLAVLDLKLDSKPGYAETFALGLASGSVLNG
Sbjct: 61  ALFKIISSGRGKKDKLLLETSRKIDATNSRLAVLDLKLDSKPGYAETFALGLASGSVLNG 120

Query: 121 LGTVMPHVFGALTNIWSSVTNLTKHS 146
           LGTVMPHVFGALTNIWSSVTNLTKHS
Sbjct: 121 LGTVMPHVFGALTNIWSSVTNLTKHS 146

[Close]

BLAST of MELO3C010416.jh1 vs. ExPASy TrEMBL
Match: A0A0A0L3B6 (Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G385280 PE=4 SV=1)

HSP 1 Score: 258 bits (660), Expect = 1.37e-86
Identity = 133/146 (91.10%), Postives = 136/146 (93.15%), Query Frame = 0


Query: 1   MEDSGSPAPPNSLPQAQHNISPAVRSRRKPPSPQELISHYESQGHTSHDASIKVIDDLQN 60
           MEDSGSPA PNSLP+ Q NISP VRS RKPPSPQELISHYESQG TSHDASIKVIDDLQN
Sbjct: 1   MEDSGSPASPNSLPKGQDNISPTVRSVRKPPSPQELISHYESQGLTSHDASIKVIDDLQN 60

Query: 61  ALFKIISSGRGKKDKLLLETSRKIDATNSRLAVLDLKLDSKPGYAETFALGLASGSVLNG 120
           ALF+IISSGRG KDK LLETSRK+DATNSRLAVLDLKLDSKPGYAETFALGLASGSVLNG
Sbjct: 61  ALFRIISSGRGNKDKRLLETSRKLDATNSRLAVLDLKLDSKPGYAETFALGLASGSVLNG 120

Query: 121 LGTVMPHVFGALTNIWSSVTNLTKHS 146
            GTVMPHVF ALTNIWSSVTNLTKHS
Sbjct: 121 FGTVMPHVFRALTNIWSSVTNLTKHS 146

[Close]

BLAST of MELO3C010416.jh1 vs. ExPASy TrEMBL
Match: A0A6J1J075 (uncharacterized protein LOC111480022 OS=Cucurbita maxima OX=3661 GN=LOC111480022 PE=4 SV=1)

HSP 1 Score: 224 bits (572), Expect = 4.04e-73
Identity = 116/149 (77.85%), Postives = 128/149 (85.91%), Query Frame = 0


Query: 1   MEDSGSPAPPNSLPQAQHNISPAVRS---RRKPPSPQELISHYESQGHTSHDASIKVIDD 60
           M DS SPA  NSLPQ  +  +P   S   RRK PSPQEL+SHYESQG TSHDASIKVI+D
Sbjct: 1   MADSNSPATQNSLPQDNNTATPMASSGAQRRKLPSPQELVSHYESQGLTSHDASIKVIED 60

Query: 61  LQNALFKIISSGRGKKDKLLLETSRKIDATNSRLAVLDLKLDSKPGYAETFALGLASGSV 120
           LQNAL +IISSGRGKKDKLL++TSRKIDATN+RLA+LDLKLDSKPGYA+TFALGLASGSV
Sbjct: 61  LQNALVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGSV 120

Query: 121 LNGLGTVMPHVFGALTNIWSSVTNLTKHS 146
           LNG+G VMPHVFGAL NIWSSV+  TKHS
Sbjct: 121 LNGIGAVMPHVFGALANIWSSVSKFTKHS 149

[Close]

BLAST of MELO3C010416.jh1 vs. ExPASy TrEMBL
Match: A0A6J1GTX5 (uncharacterized protein LOC111457504 OS=Cucurbita moschata OX=3662 GN=LOC111457504 PE=4 SV=1)

HSP 1 Score: 223 bits (569), Expect = 1.20e-72
Identity = 115/150 (76.67%), Postives = 128/150 (85.33%), Query Frame = 0


Query: 1   MEDSGSPAPPNSLPQAQHNISPAVRS----RRKPPSPQELISHYESQGHTSHDASIKVID 60
           M DS SPA  NSLPQ  +  +P   S    RRK PSPQEL+SHYESQG TSHDASIKVI+
Sbjct: 1   MADSNSPATQNSLPQDNNTATPMASSGGAQRRKLPSPQELVSHYESQGLTSHDASIKVIE 60

Query: 61  DLQNALFKIISSGRGKKDKLLLETSRKIDATNSRLAVLDLKLDSKPGYAETFALGLASGS 120
           DLQNAL +IISSGRGKKDKLL++TSRKIDATN+RLA+LDLKLDSKPGYA+TFALGLASGS
Sbjct: 61  DLQNALVRIISSGRGKKDKLLVDTSRKIDATNTRLAILDLKLDSKPGYAQTFALGLASGS 120

Query: 121 VLNGLGTVMPHVFGALTNIWSSVTNLTKHS 146
           VLNG+G VMPHVFGA+ NIWSSV+  TKHS
Sbjct: 121 VLNGIGAVMPHVFGAIANIWSSVSKFTKHS 150

[Close]

BLAST of MELO3C010416.jh1 vs. TAIR 10
Match: AT1G16790.1 (ribosomal protein-related )

HSP 1 Score: 129.4 bits (324), Expect = 2.3e-30
Identity = 73/135 (54.07%), Postives = 95/135 (70.37%), Query Frame = 0


Query: 7   PAPPNSLPQAQHNISPAVRSRRKPPSPQELISHYESQGHTSHDASIKVIDDLQNALFKII 66
           PA PN+   A+   S   +  +K P+P ELISHY+ +G    +ASIKVI+DLQNAL +++
Sbjct: 4   PATPNA---AEETKSEQKQKSKKFPTPTELISHYQKRGLEPAEASIKVIEDLQNALVRVV 63

Query: 67  SSGR--GKKDKLLLETSRKIDATNSRLAVLDLKLDSKPGYAETFALGLASGSVLNGLGTV 126
           SS R    KDKL+ + +RKIDA N RLAV+D KL++KPGY ETFALGLASG+ LNG+  V
Sbjct: 64  SSSRNASSKDKLVTD-ARKIDAINGRLAVVDAKLETKPGYVETFALGLASGATLNGISAV 123

Query: 127 MPHVFGALTNIWSSV 140
            PHV   +  IWS+V
Sbjct: 124 WPHVTRGIGQIWSAV 134

The following BLAST results are available for this feature:

BLAST of MELO3C010416.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description
XP_016899843.1	7.26e-98	100.00	PREDICTED: uncharacterized protein LOC103487537 [Cucumis melo] >KAA0064210.1 put...	[more]
XP_011653828.1	2.82e-86	91.10	uncharacterized protein LOC101209567 [Cucumis sativus]	[more]
XP_038893730.1	5.50e-78	82.55	uncharacterized protein LOC120082569 [Benincasa hispida]	[more]
XP_022980748.1	8.34e-73	77.85	uncharacterized protein LOC111480022 [Cucurbita maxima]	[more]
XP_022955496.1	2.47e-72	76.67	uncharacterized protein LOC111457504 [Cucurbita moschata]	[more]

BLAST of MELO3C010416.jh1 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C010416.jh1 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5A7VAF7	3.51e-98	100.00	Putative ribosomal-like protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_...	[more]
A0A1S4DV46	3.51e-98	100.00	uncharacterized protein LOC103487537 OS=Cucumis melo OX=3656 GN=LOC103487537 PE=...	[more]
A0A0A0L3B6	1.37e-86	91.10	Uncharacterized protein OS=Cucumis sativus OX=3659 GN=Csa_4G385280 PE=4 SV=1	[more]
A0A6J1J075	4.04e-73	77.85	uncharacterized protein LOC111480022 OS=Cucurbita maxima OX=3661 GN=LOC111480022...	[more]
A0A6J1GTX5	1.20e-72	76.67	uncharacterized protein LOC111457504 OS=Cucurbita moschata OX=3662 GN=LOC1114575...	[more]

BLAST of MELO3C010416.jh1 vs. TAIR 10


Match Name	E-value	Identity	Description
AT1G16790.1	2.3e-30	54.07	ribosomal protein-related	[more]

InterPro

Analysis Name: InterPro Annotations of Melon (Harukei-3) v1.41
Date Performed: 2021-10-25


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..48
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 8..22

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C010416.jh1.t1	MELO3C010416.jh1.t1	mRNA