MELO3C010406 (gene) Melon (DHL92) v4

Overview


Name	MELO3C010406
Type	gene
Organism	Cucumis melo cv. DHL92 (Melon (DHL92) v4)
Description	Retrotransposon protein
Location	chr07: 10025566 .. 10025964 (-)
RNA-Seq Expression	MELO3C010406
Synteny	MELO3C010406

Sequences

The following sequences are available for this feature:

Gene sequence (with intron)

Legend: exonCDSpolypeptide

Hold the cursor over a type above to highlight its positions in the sequence below.

ATGGAGTTCCCCGCTATGTGCAGACCGAGGATGAACATGTCCCCTAAGGACATGATGAGCGATAGATCAAGCCAGTCGAGCGATGCTAGGATGGTCTCTAGCAGACAAAAAAGGAAGCGCTTCATGCAGCAGTTAGAGACGTACGACCTGATTCGCAAATGTATGGAGGTTGCGACTGATCAGCTGAGAACCATTGTAGAATGGCCAGAGAAAGCTATGAGCCGGGAGGACGTGATGCCGGTGCAGGTGATTGAGCTTTCGGAGTCCATCCCAAACCTTACTATAGCGGAGAAGAGTAAGTGCATCATGATAGTGAATCAGAAGGTGTCACTCAAAAGAAGCTTCATCAAGATGTTCGATTCGATGAAGACCGCTTACTGTAAGGTCCCTCCTTGGTAG

mRNA sequence

ATGGAGTTCCCCGCTATGTGCAGACCGAGGATGAACATGTCCCCTAAGGACATGATGAGCGATAGATCAAGCCAGTCGAGCGATGCTAGGATGGTCTCTAGCAGACAAAAAAGGAAGCGCTTCATGCAGCAGTTAGAGACGTACGACCTGATTCGCAAATGTATGGAGGTTGCGACTGATCAGCTGAGAACCATTGTAGAATGGCCAGAGAAAGCTATGAGCCGGGAGGACGTGATGCCGGTGCAGGTGATTGAGCTTTCGGAGTCCATCCCAAACCTTACTATAGCGGAGAAGAGTAAGTGCATCATGATAGTGAATCAGAAGGTGTCACTCAAAAGAAGCTTCATCAAGATGTTCGATTCGATGAAGACCGCTTACTGTAAGGTCCCTCCTTGGTAG

Coding sequence (CDS)

ATGGAGTTCCCCGCTATGTGCAGACCGAGGATGAACATGTCCCCTAAGGACATGATGAGCGATAGATCAAGCCAGTCGAGCGATGCTAGGATGGTCTCTAGCAGACAAAAAAGGAAGCGCTTCATGCAGCAGTTAGAGACGTACGACCTGATTCGCAAATGTATGGAGGTTGCGACTGATCAGCTGAGAACCATTGTAGAATGGCCAGAGAAAGCTATGAGCCGGGAGGACGTGATGCCGGTGCAGGTGATTGAGCTTTCGGAGTCCATCCCAAACCTTACTATAGCGGAGAAGAGTAAGTGCATCATGATAGTGAATCAGAAGGTGTCACTCAAAAGAAGCTTCATCAAGATGTTCGATTCGATGAAGACCGCTTACTGTAAGGTCCCTCCTTGGTAG

Protein sequence

MEFPAMCRPRMNMSPKDMMSDRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATDQLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMFDSMKTAYCKVPPW

Homology

[Close]

BLAST of MELO3C010406 vs. NCBI nr
Match: KAA0064184.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 253.4 bits (646), Expect = 1.0e-63
Identity = 131/132 (99.24%), Postives = 131/132 (99.24%), Query Frame = 0


Query: 1   MEFPAMCRPRMNMSPKDMMSDRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATD 60
           MEFPAMCRPRMNMSPKDMMS RSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATD
Sbjct: 200 MEFPAMCRPRMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATD 259

Query: 61  QLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMFD 120
           QLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMFD
Sbjct: 260 QLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMFD 319

Query: 121 SMKTAYCKVPPW 133
           SMKTAYCKVPPW
Sbjct: 320 SMKTAYCKVPPW 331

[Close]

BLAST of MELO3C010406 vs. NCBI nr
Match: TYK02844.1 (retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 253.4 bits (646), Expect = 1.0e-63
Identity = 131/132 (99.24%), Postives = 131/132 (99.24%), Query Frame = 0


Query: 1   MEFPAMCRPRMNMSPKDMMSDRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATD 60
           MEFPAMCRPRMNMSPKDMMS RSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATD
Sbjct: 87  MEFPAMCRPRMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATD 146

Query: 61  QLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMFD 120
           QLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMFD
Sbjct: 147 QLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMFD 206

Query: 121 SMKTAYCKVPPW 133
           SMKTAYCKVPPW
Sbjct: 207 SMKTAYCKVPPW 218

[Close]

BLAST of MELO3C010406 vs. NCBI nr
Match: KAA0048148.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK08106.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 183.0 bits (463), Expect = 1.7e-42
Identity = 96/129 (74.42%), Postives = 105/129 (81.40%), Query Frame = 0


Query: 1   MEFPAMCRPRMNMSPKDMMSDRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATD 60
           MEFP MC PRMNMSPKDMM  RS +SSD R  SS QKRK  MQQ ETYDLIR+CME ATD
Sbjct: 58  MEFPVMCSPRMNMSPKDMMGGRSGRSSDGRTGSSEQKRKHSMQQFETYDLIRECMEAATD 117

Query: 61  QLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMFD 120
           QLRTI EWP+KAMS ED M  QVIEL ++I NLT+AEKSKC+M+VNQKVSL RSFIKM D
Sbjct: 118 QLRTIAEWPKKAMSWEDTMAAQVIELIKAISNLTMAEKSKCVMLVNQKVSLMRSFIKMPD 177

Query: 121 SMKTAYCKV 130
            MK AYC+V
Sbjct: 178 LMKAAYCRV 186

[Close]

BLAST of MELO3C010406 vs. NCBI nr
Match: KAA0033551.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYJ95636.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 177.6 bits (449), Expect = 7.3e-41
Identity = 93/129 (72.09%), Postives = 105/129 (81.40%), Query Frame = 0


Query: 1   MEFPAMCRPRMNMSPKDMMSDRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATD 60
           MEFPAMC PRMNMSP++MM  RS +S+D RM S+ QKRK  MQQ ETYDLI +CME ATD
Sbjct: 79  MEFPAMCSPRMNMSPENMMGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATD 138

Query: 61  QLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMFD 120
           QLRTI EWPEK MS ED M  QVIEL E+IPNLT+AEKSKC+M+VNQKVSL RSFIKM D
Sbjct: 139 QLRTIAEWPEKFMSWEDAMAAQVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRSFIKMPD 198

Query: 121 SMKTAYCKV 130
           SMK  Y ++
Sbjct: 199 SMKAIYGRI 207

[Close]

BLAST of MELO3C010406 vs. NCBI nr
Match: KAA0055070.1 (retrotransposon protein [Cucumis melo var. makuwa] >TYK24415.1 retrotransposon protein [Cucumis melo var. makuwa])

HSP 1 Score: 130.2 bits (326), Expect = 1.3e-26
Identity = 78/129 (60.47%), Postives = 85/129 (65.89%), Query Frame = 0


Query: 1   MEFPAMCRPRMNMSPKDMMSDRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATD 60
           MEFPAMC PRMNMSP+DM+  RSS+SSD R  SS QKRKR MQQ ET+DLI         
Sbjct: 99  MEFPAMCSPRMNMSPEDMIGGRSSRSSDGRTGSSEQKRKRSMQQFETFDLI--------- 158

Query: 61  QLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMFD 120
                               +QVIEL E IPNLT+AEKSKCIMI+NQKVSL RSFIKM D
Sbjct: 159 ------------------CELQVIELMEIIPNLTMAEKSKCIMIMNQKVSLMRSFIKMSD 200

Query: 121 SMKTAYCKV 130
           SM  AYCKV
Sbjct: 219 SMMAAYCKV 200

[Close]

BLAST of MELO3C010406 vs. ExPASy TrEMBL
Match: A0A5D3BUJ4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold218G00420 PE=4 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 5.0e-64
Identity = 131/132 (99.24%), Postives = 131/132 (99.24%), Query Frame = 0


Query: 1   MEFPAMCRPRMNMSPKDMMSDRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATD 60
           MEFPAMCRPRMNMSPKDMMS RSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATD
Sbjct: 87  MEFPAMCRPRMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATD 146

Query: 61  QLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMFD 120
           QLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMFD
Sbjct: 147 QLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMFD 206

Query: 121 SMKTAYCKVPPW 133
           SMKTAYCKVPPW
Sbjct: 207 SMKTAYCKVPPW 218

[Close]

BLAST of MELO3C010406 vs. ExPASy TrEMBL
Match: A0A5A7VAC3 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold548G001190 PE=3 SV=1)

HSP 1 Score: 253.4 bits (646), Expect = 5.0e-64
Identity = 131/132 (99.24%), Postives = 131/132 (99.24%), Query Frame = 0


Query: 1   MEFPAMCRPRMNMSPKDMMSDRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATD 60
           MEFPAMCRPRMNMSPKDMMS RSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATD
Sbjct: 200 MEFPAMCRPRMNMSPKDMMSGRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATD 259

Query: 61  QLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMFD 120
           QLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMFD
Sbjct: 260 QLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMFD 319

Query: 121 SMKTAYCKVPPW 133
           SMKTAYCKVPPW
Sbjct: 320 SMKTAYCKVPPW 331

[Close]

BLAST of MELO3C010406 vs. ExPASy TrEMBL
Match: A0A5A7TYU4 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold265G002690 PE=4 SV=1)

HSP 1 Score: 183.0 bits (463), Expect = 8.4e-43
Identity = 96/129 (74.42%), Postives = 105/129 (81.40%), Query Frame = 0


Query: 1   MEFPAMCRPRMNMSPKDMMSDRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATD 60
           MEFP MC PRMNMSPKDMM  RS +SSD R  SS QKRK  MQQ ETYDLIR+CME ATD
Sbjct: 58  MEFPVMCSPRMNMSPKDMMGGRSGRSSDGRTGSSEQKRKHSMQQFETYDLIRECMEAATD 117

Query: 61  QLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMFD 120
           QLRTI EWP+KAMS ED M  QVIEL ++I NLT+AEKSKC+M+VNQKVSL RSFIKM D
Sbjct: 118 QLRTIAEWPKKAMSWEDTMAAQVIELIKAISNLTMAEKSKCVMLVNQKVSLMRSFIKMPD 177

Query: 121 SMKTAYCKV 130
            MK AYC+V
Sbjct: 178 LMKAAYCRV 186

[Close]

BLAST of MELO3C010406 vs. ExPASy TrEMBL
Match: A0A5D3B9T0 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold104G00610 PE=4 SV=1)

HSP 1 Score: 177.6 bits (449), Expect = 3.5e-41
Identity = 93/129 (72.09%), Postives = 105/129 (81.40%), Query Frame = 0


Query: 1   MEFPAMCRPRMNMSPKDMMSDRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATD 60
           MEFPAMC PRMNMSP++MM  RS +S+D RM S+ QKRK  MQQ ETYDLI +CME ATD
Sbjct: 79  MEFPAMCSPRMNMSPENMMGGRSGRSNDGRMGSNGQKRKHSMQQFETYDLIHECMEAATD 138

Query: 61  QLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMFD 120
           QLRTI EWPEK MS ED M  QVIEL E+IPNLT+AEKSKC+M+VNQKVSL RSFIKM D
Sbjct: 139 QLRTIAEWPEKFMSWEDAMAAQVIELIEAIPNLTMAEKSKCVMLVNQKVSLMRSFIKMPD 198

Query: 121 SMKTAYCKV 130
           SMK  Y ++
Sbjct: 199 SMKAIYGRI 207

[Close]

BLAST of MELO3C010406 vs. ExPASy TrEMBL
Match: A0A5D3DLC6 (Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold205G002060 PE=4 SV=1)

HSP 1 Score: 130.2 bits (326), Expect = 6.4e-27
Identity = 78/129 (60.47%), Postives = 85/129 (65.89%), Query Frame = 0


Query: 1   MEFPAMCRPRMNMSPKDMMSDRSSQSSDARMVSSRQKRKRFMQQLETYDLIRKCMEVATD 60
           MEFPAMC PRMNMSP+DM+  RSS+SSD R  SS QKRKR MQQ ET+DLI         
Sbjct: 99  MEFPAMCSPRMNMSPEDMIGGRSSRSSDGRTGSSEQKRKRSMQQFETFDLI--------- 158

Query: 61  QLRTIVEWPEKAMSREDVMPVQVIELSESIPNLTIAEKSKCIMIVNQKVSLKRSFIKMFD 120
                               +QVIEL E IPNLT+AEKSKCIMI+NQKVSL RSFIKM D
Sbjct: 159 ------------------CELQVIELMEIIPNLTMAEKSKCIMIMNQKVSLMRSFIKMSD 200

Query: 121 SMKTAYCKV 130
           SM  AYCKV
Sbjct: 219 SMMAAYCKV 200

The following BLAST results are available for this feature:

BLAST of MELO3C010406 vs. NCBI nr


Match Name	E-value	Identity	Description
KAA0064184.1	1.0e-63	99.24	retrotransposon protein [Cucumis melo var. makuwa]	[more]
TYK02844.1	1.0e-63	99.24	retrotransposon protein [Cucumis melo var. makuwa]	[more]
KAA0048148.1	1.7e-42	74.42	retrotransposon protein [Cucumis melo var. makuwa] >TYK08106.1 retrotransposon p...	[more]
KAA0033551.1	7.3e-41	72.09	retrotransposon protein [Cucumis melo var. makuwa] >TYJ95636.1 retrotransposon p...	[more]
KAA0055070.1	1.3e-26	60.47	retrotransposon protein [Cucumis melo var. makuwa] >TYK24415.1 retrotransposon p...	[more]

BLAST of MELO3C010406 vs. NCBI nr


Match Name	E-value	Identity	Description

BLAST of MELO3C010406 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description
A0A5D3BUJ4	5.0e-64	99.24	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5A7VAC3	5.0e-64	99.24	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E6C27_scaffold...	[more]
A0A5A7TYU4	8.4e-43	74.42	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3B9T0	3.5e-41	72.09	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]
A0A5D3DLC6	6.4e-27	60.47	Retrotransposon protein OS=Cucumis melo var. makuwa OX=1194695 GN=E5676_scaffold...	[more]

BLAST of MELO3C010406 vs. ExPASy TrEMBL


Match Name	E-value	Identity	Description

InterPro

Analysis Name: InterPro Annotations of Melon (DHL92) v4
Date Performed: 2022-08-06


IPR Term	IPR Description	Source	Source Term	Source Description	Alignment
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 1..37
None	No IPR available	MOBIDB_LITE	mobidb-lite	disorder_prediction	coord: 17..31

Relationships

The following mRNA feature(s) are a part of this gene:


Feature Name	Unique Name	Type
MELO3C010406.1	MELO3C010406.1	mRNA